Rmu_sc0010543.1_g000006

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010543.1
Physical Location & Seq
Forward (+)
24694 .. 25194
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010543.1_g000006.1.cds

Sequence Viewer

Length: 501 bp
atggcagcacaaaccaaccttaacatcaccacagaccggtctgctcttcttgctctcaaagcccgtatcaccaatgaccctcgaaacatagtcttcaccaattggtcaaccacaacccctgtttgtaactgggttggagtcacttgtggtgcacgccatcatcgaatcgcaaagttgaacgtatctcactttggcctcacaggcaccattcctccggagctaggcaacttatcttttcttgttgttctggacttcaaaaataatagttttcacggtatcttgcctcaagaattggcttgcctgcatcggttgaagtttataggcctgacaagcaacaagttcatgggagtcattccatcttggtttggctccttattcaaacttcaagcattcggtttgtgtgataatcaattttcaggttccataccaactacaatcttcaacttatctgctctgcaaataattagtctgtgttctaaccaactctcaggtatgaactaa

Protein Analysis

166

Amino Acids

18.19

Weight (kDa)

9.45

Isoelectric Point (pI)

23.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccIII TCCGGA 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 36, 221
AgeI ACCGGT 1 cut(s) 36
AgsI TTSAA 6 cut(s) 178, 256, 313, 379, 386, 442
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 154
Alw44I GTGCAC 1 cut(s) 150
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 2 cut(s) 193, 322
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 5
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AsiGI ACCGGT 1 cut(s) 36
AsuHPI GGTGA 3 cut(s) 19, 61, 88
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 165, 364
BfaI CTAG 1 cut(s) 221
BglI GCCNNNNNGGC 1 cut(s) 201
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 3 cut(s) 205, 370, 421
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 270
BsaWI WCCGGW 2 cut(s) 36, 214
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 221
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 134
BseAI TCCGGA 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 36, 221
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 195, 324
BshNI GGYRCC 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 37, 215
BslI CCNNNNNNNGG 2 cut(s) 36, 221
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 2 cut(s) 195, 324
Bsp1286I GDGCHC 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 214
BspANI GGCC 2 cut(s) 195, 324
BspCNI CTCAG 1 cut(s) 500
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 205, 370, 421
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 36
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 154, 298, 302
BstDEI CTNAG 1 cut(s) 487
BstMWI GCNNNNNNNGC 4 cut(s) 50, 59, 201, 330
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 85
BsuRI GGCC 2 cut(s) 195, 324
Cac8I GCNNGC 3 cut(s) 154, 298, 302
Cfr10I RCCGGY 1 cut(s) 36
CspAI ACCGGT 1 cut(s) 36
CviAII CATG 1 cut(s) 343
CviJI RGCY 6 cut(s) 62, 195, 220, 296, 324, 369
CviKI_1 RGCY 6 cut(s) 62, 195, 220, 296, 324, 369
DdeI CTNAG 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 324
FaeI CATG 1 cut(s) 346
FaiI YATR 5 cut(s) 89, 320, 344, 425, 494
FatI CATG 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 195, 324
HapII CCGG 2 cut(s) 37, 215
Hin1II CATG 1 cut(s) 346
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 3 cut(s) 138, 165, 348
HpaII CCGG 2 cut(s) 37, 215
HphI GGTGA 3 cut(s) 19, 61, 88
Hpy166II GTNNAC 2 cut(s) 108, 152
Hpy188III TCNNGA 3 cut(s) 215, 248, 287
Hpy8I GTNNAC 2 cut(s) 108, 152
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 152, 304, 457
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 59, 201, 330
HpyF3I CTNAG 1 cut(s) 487
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 1 cut(s) 346
Kpn2I TCCGGA 1 cut(s) 214
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 217, 374
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 125, 139
MboII GAAGA 3 cut(s) 38, 85, 430
MfeI CAATTG 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 4 cut(s) 100, 290, 410, 462
MlyI GAGTC 2 cut(s) 147, 357
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 4 cut(s) 90, 206, 222, 294
MroI TCCGGA 1 cut(s) 214
MseI TTAA 1 cut(s) 21
MspI CCGG 2 cut(s) 37, 215
MunI CAATTG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 389
MwoI GCNNNNNNNGC 4 cut(s) 50, 59, 201, 330
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 3 cut(s) 205, 370, 421
NmuCI GTSAC 1 cut(s) 139
PceI AGGCCT 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 165
PinAI ACCGGT 1 cut(s) 36
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 146, 356
PpsI GAGTC 2 cut(s) 146, 356
PspN4I GGNNCC 3 cut(s) 205, 370, 421
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 6
SchI GAGTC 2 cut(s) 147, 357
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 21, 183, 222, 421, 493
SfaNI GCATC 1 cut(s) 313
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 4 cut(s) 100, 290, 410, 462
SseBI AGGCCT 1 cut(s) 324
SspMI CTAG 1 cut(s) 221
StuI AGGCCT 1 cut(s) 324
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 82, 163
TasI AATT 4 cut(s) 100, 290, 410, 462
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 331
VneI GTGCAC 1 cut(s) 150
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.