Rh2CG249100

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000229
Physical Location & Seq
Reverse (-)
26272170 .. 26281431
9262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG249100.1

Sequence Viewer

Length: 819 bp
ATGGAGCGAGTTACTTGGTTCTTCCTGATATTTTTGATCTATTGTGAGGCGGCTAGCTGCTTAACTATGGCAGCACAAACCAACCTTAACATCACCACAGACCGGTCTGCTCTTCTTGCTCTCAAAGCTCGTATCACCAGTGACCCTCAAAACATGATCTTCACCAACTGGTCAACCACTACTCCTATTTGTAACTGGGTTGGGGTCACTTGTGGTGCACGCCATCATCGAGTCGCAGACTTGAACCTTTCTTACTTTAGTCTCACAGGCACCATTCCTCCGGATCTAGGCAACTTATCTTTTCTTGTTGTTCTGGATATCAAAAATAATAGTTTTCATGGTATCTTGCCTCAAGAACTAGCTTGCCTGCGTCGGTTGAAGTATATAAGCTTGAGAAACAACAAGTTCATGGGAGTCATTCCGTCATGGTTTGGATCCTTATTCAAACTTCAAGTATTCAGTTTGTTTGGTAATCAATTTTCAGGTTCCATACCAGCTACAATCTTCAACTTATCTGATCTGCAAACAATTAATCTGAGTTATAACCAACTCTCAGTAGTCTCTGGTTTGCTTGGGTCTCTAATGGCACAAGGTGTGATCTCATTGAAAAACCAAAGCAAAGGAGGACATGAGGGTGCTAGTTCACTGAATTATGTACCTCTTGTACCACAGCCTGTTCAAAATGCTGTTGCTGATGTTCCAGTAGTAGTTCCTGGTTTAATTGATTCTCTCCTGGCACAAGGAGTCATGAAGAACCGTATGTCCAAAACCCGCAAGCAGAAGCCCTTTCGTAACTTTTATGCAACTACAAGCATGTAG

Protein Analysis

272

Amino Acids

30.0

Weight (kDa)

9.61

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 71 1e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 82 - 185 1.5e-08 Leucine-rich repeat region
LRR_8 PF13855 124 - 184 2.2e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AccB1I GGYRCC 1 cut(s) 269
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 2 cut(s) 50, 772
AclWI GGATC 3 cut(s) 291, 429, 442
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 2 cut(s) 657, 666
AfiI CCNNNNNNNGG 2 cut(s) 102, 287
AgeI ACCGGT 1 cut(s) 102
AgsI TTSAA 7 cut(s) 244, 379, 445, 452, 508, 607, 680
AjnI CCWGG 2 cut(s) 712, 732
AloI GAACNNNNNNTCC 2 cut(s) 746, 778
AluBI AGCT 5 cut(s) 57, 128, 362, 390, 497
AluI AGCT 5 cut(s) 57, 128, 362, 390, 497
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 3 cut(s) 266, 565, 582
Alw44I GTGCAC 1 cut(s) 216
AlwI GGATC 3 cut(s) 291, 429, 442
Aor13HI TCCGGA 1 cut(s) 280
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 2 cut(s) 57, 71
AseI ATTAAT 1 cut(s) 531
AsiGI ACCGGT 1 cut(s) 102
AsuHPI GGTGA 3 cut(s) 85, 127, 154
AsuNHI GCTAGC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 220
BamHI GGATCC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 44, 83
BccI CCATC 1 cut(s) 231
BciT130I CCWGG 2 cut(s) 714, 734
BcoDI GTCTC 3 cut(s) 266, 565, 582
BfaI CTAG 4 cut(s) 54, 287, 359, 639
BisI GCNGC 3 cut(s) 51, 58, 72
BlsI GCNGC 3 cut(s) 52, 59, 73
Bme1390I CCNGG 2 cut(s) 714, 734
BmiI GGNNCC 3 cut(s) 271, 436, 487
BmrFI CCNGG 2 cut(s) 714, 734
BmrI ACTGGG 1 cut(s) 205
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 205
BpuEI CTTGAG 2 cut(s) 336, 412
BsaI GGTCTC 1 cut(s) 582
BsaWI WCCGGW 2 cut(s) 102, 280
BsaXI ACNNNNNCTCC 4 cut(s) 166, 196, 262, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 287
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 4 cut(s) 138, 173, 200, 701
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 2 cut(s) 714, 734
BseLI CCNNNNNNNGG 2 cut(s) 102, 287
BseMII CTCAG 2 cut(s) 527, 567
BseNI ACTGG 4 cut(s) 138, 173, 200, 701
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 2 cut(s) 44, 83
BshNI GGYRCC 1 cut(s) 269
BshTI ACCGGT 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 2 cut(s) 103, 281
BslI CCNNNNNNNGG 2 cut(s) 102, 287
BsmAI GTCTC 3 cut(s) 266, 565, 582
Bso31I GGTCTC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 220
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 6 cut(s) 36, 156, 283, 434, 517, 597
BspACI CCGC 2 cut(s) 50, 772
BspCNI CTCAG 2 cut(s) 528, 566
BspEI TCCGGA 1 cut(s) 280
BspHI TCATGA 1 cut(s) 747
BspLI GGNNCC 3 cut(s) 271, 436, 487
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 3 cut(s) 291, 429, 442
BspQI GCTCTTC 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 582
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 4 cut(s) 138, 173, 200, 701
BssAI RCCGGY 1 cut(s) 102
BssMI GATC 6 cut(s) 36, 156, 283, 434, 517, 597
Bst2UI CCWGG 2 cut(s) 714, 734
Bst4CI ACNGT 1 cut(s) 758
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 5 cut(s) 55, 220, 364, 368, 776
BstDEI CTNAG 2 cut(s) 536, 553
BstKTI GATC 6 cut(s) 39, 159, 286, 437, 520, 600
BstMAI GTCTC 3 cut(s) 266, 565, 582
BstMBI GATC 6 cut(s) 36, 156, 283, 434, 517, 597
BstMWI GCNNNNNNNGC 2 cut(s) 116, 125
BstNI CCWGG 2 cut(s) 714, 734
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 2 cut(s) 712, 732
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 44, 83
BstX2I RGATCY 2 cut(s) 283, 434
BstYI RGATCY 2 cut(s) 283, 434
BtsIMutI CAGTG 2 cut(s) 145, 644
Cac8I GCNNGC 5 cut(s) 55, 220, 364, 368, 776
CciI TCATGA 1 cut(s) 747
Cfr10I RCCGGY 1 cut(s) 102
CseI GACGC 1 cut(s) 359
Csp6I GTAC 2 cut(s) 656, 665
CspAI ACCGGT 1 cut(s) 102
CviAII CATG 7 cut(s) 154, 338, 409, 426, 629, 748, 814
CviJI RGCY 8 cut(s) 53, 57, 128, 362, 390, 497, 673, 784
CviKI_1 RGCY 8 cut(s) 53, 57, 128, 362, 390, 497, 673, 784
CviQI GTAC 2 cut(s) 656, 665
DdeI CTNAG 2 cut(s) 536, 553
DpnI GATC 6 cut(s) 38, 158, 285, 436, 519, 599
DpnII GATC 6 cut(s) 36, 156, 283, 434, 517, 597
DraIII CACNNNGTG 1 cut(s) 593
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 582
Eco32I GATATC 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 712, 732
EcoRV GATATC 1 cut(s) 319
FaeI CATG 7 cut(s) 157, 341, 412, 429, 632, 751, 817
FatI CATG 7 cut(s) 153, 337, 408, 425, 628, 747, 813
FauI CCCGC 1 cut(s) 779
Fnu4HI GCNGC 3 cut(s) 51, 58, 72
Fsp4HI GCNGC 3 cut(s) 51, 58, 72
FspBI CTAG 4 cut(s) 54, 287, 359, 639
GluI GCNGC 3 cut(s) 51, 58, 72
HapII CCGG 2 cut(s) 103, 281
HgaI GACGC 1 cut(s) 359
Hin1II CATG 7 cut(s) 157, 341, 412, 429, 632, 751, 817
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 4 cut(s) 231, 414, 725, 744
HpaII CCGG 2 cut(s) 103, 281
HphI GGTGA 3 cut(s) 85, 127, 154
Hpy166II GTNNAC 3 cut(s) 174, 218, 644
Hpy188I TCNGA 2 cut(s) 517, 537
Hpy188III TCNNGA 5 cut(s) 25, 281, 314, 353, 748
Hpy8I GTNNAC 3 cut(s) 174, 218, 644
Hpy99I CGWCG 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 758
HpyCH4V TGCA 3 cut(s) 218, 523, 803
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 125
HpyF3I CTNAG 2 cut(s) 536, 553
Hsp92II CATG 7 cut(s) 157, 341, 412, 429, 632, 751, 817
Kpn2I TCCGGA 1 cut(s) 280
Kzo9I GATC 6 cut(s) 36, 156, 283, 434, 517, 597
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 44, 83
MaeI CTAG 4 cut(s) 54, 287, 359, 639
MaeIII GTNAC 5 cut(s) 10, 140, 191, 205, 791
MalI GATC 6 cut(s) 38, 158, 285, 436, 519, 599
MboI GATC 6 cut(s) 36, 156, 283, 434, 517, 597
MboII GAAGA 5 cut(s) 13, 104, 151, 496, 763
MflI RGATCY 2 cut(s) 283, 434
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 4 cut(s) 476, 528, 649, 720
MlyI GAGTC 3 cut(s) 240, 423, 753
MnlI CCTC 7 cut(s) 40, 156, 288, 360, 617, 625, 669
MroI TCCGGA 1 cut(s) 280
MseI TTAA 4 cut(s) 62, 87, 531, 719
MslI CAYNNNNRTG 1 cut(s) 633
MspI CCGG 2 cut(s) 103, 281
MspR9I CCNGG 2 cut(s) 714, 734
MvaI CCWGG 2 cut(s) 714, 734
MwoI GCNNNNNNNGC 2 cut(s) 116, 125
NdeII GATC 6 cut(s) 36, 156, 283, 434, 517, 597
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 7 cut(s) 157, 341, 412, 429, 632, 751, 817
NlaIV GGNNCC 3 cut(s) 271, 436, 487
NmuCI GTSAC 2 cut(s) 140, 205
NspI RCATGY 1 cut(s) 817
PagI TCATGA 1 cut(s) 747
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PfeI GAWTC 1 cut(s) 725
PinAI ACCGGT 1 cut(s) 102
PkrI GCNGC 3 cut(s) 52, 59, 73
PleI GAGTC 3 cut(s) 239, 422, 752
PpsI GAGTC 3 cut(s) 239, 422, 752
PshBI ATTAAT 1 cut(s) 531
PsiI TTATAA 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 712, 732
PspGI CCWGG 2 cut(s) 712, 732
PspN4I GGNNCC 3 cut(s) 271, 436, 487
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
PsuI RGATCY 2 cut(s) 283, 434
RsaI GTAC 2 cut(s) 657, 666
RsaNI GTAC 2 cut(s) 656, 665
RseI CAYNNNNRTG 1 cut(s) 633
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 4 cut(s) 62, 87, 531, 719
SatI GCNGC 3 cut(s) 51, 58, 72
Sau3AI GATC 6 cut(s) 36, 156, 283, 434, 517, 597
SchI GAGTC 3 cut(s) 240, 423, 753
ScrFI CCNGG 2 cut(s) 714, 734
SduI GDGCHC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 2 cut(s) 351, 391
SmoI CTYRAG 2 cut(s) 351, 391
Sse9I AATT 4 cut(s) 476, 528, 649, 720
SsiI CCGC 2 cut(s) 50, 772
SspMI CTAG 4 cut(s) 54, 287, 359, 639
StyD4I CCNGG 2 cut(s) 712, 732
TaaI ACNGT 1 cut(s) 758
TaqI TCGA 1 cut(s) 229
TasI AATT 4 cut(s) 476, 528, 649, 720
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 725
Tru1I TTAA 4 cut(s) 62, 87, 531, 719
Tru9I TTAA 4 cut(s) 62, 87, 531, 719
TscAI CASTG 2 cut(s) 145, 651
TseFI GTSAC 2 cut(s) 140, 205
TseI GCWGC 2 cut(s) 57, 71
Tsp45I GTSAC 2 cut(s) 140, 205
TspDTI ATGAA 3 cut(s) 326, 397, 764
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 2 cut(s) 145, 651
VneI GTGCAC 1 cut(s) 216
VspI ATTAAT 1 cut(s) 531
XceI RCATGY 1 cut(s) 817
XspI CTAG 4 cut(s) 54, 287, 359, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.