Rh4DG110100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000229
Physical Location & Seq
Forward (+)
17067878 .. 17091145
23268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG110100.1

Sequence Viewer

Length: 525 bp
ATGGCTGCTAACAACATTCCATTGGGTTTGGATAAGGAACAGCTTCCTTACCTCAGCAATTGTACAGAGCTTGTCGGCTTATCTTTGTCATACAATATGTTTGTGGGAAAAATTCCAGCAGATGTTGGCTACTTAAAAAAACTTGAAGGACTTTATCTTGGTTTTAATAGCCTCACTGGTACCATACCTCCTACCATAGGTAACTTGTCCAACTTGAAATCCTTGGGTTTGAGGCAGAGTAACCTTAAGGGAAGCATTCCTCGTGATTTAGGGCGTCTTTCTAGATTAGTCGAACTTGTGGTTGGTCGGAATGGCCTAACCGGACCAGTGCCTCCAGAAATTTTCAATATCTCTTCTCTGCAAGTAATTGAAGCAAGAGATAATGCCCTTTCAGGAAAGTTTCCTTCCTCCTCTGCAGTTCGGCTTCCTAGCATTGAATTCATCTCTTTTTCTAACAATACAATTACTGGACATGTCCCGTCCTATTTTGCAAATTTTACAAAGCTCAAGTTGTTTCAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.78

Weight (kDa)

9.48

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 12 - 125 3.8e-08 Leucine-rich repeat region
LRR_8 PF13855 47 - 106 3.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 179
AcsI RAATTY 4 cut(s) 111, 339, 437, 493
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 2 cut(s) 64, 181
AfiI CCNNNNNNNGG 1 cut(s) 197
AflII CTTAAG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 5 cut(s) 146, 217, 346, 371, 437
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 3 cut(s) 43, 70, 505
AluI AGCT 3 cut(s) 43, 70, 505
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 4 cut(s) 111, 339, 437, 493
Asp700I GAANNNNTTC 1 cut(s) 42
Asp718I GGTACC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 323
AvaII GGWCC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 179
BauI CACGAG 1 cut(s) 261
BbvCI CCTCAGC 1 cut(s) 53
BfaI CTAG 2 cut(s) 282, 429
BfmI CTRYAG 1 cut(s) 414
BfrI CTTAAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 491
BsaHI GRCGYC 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 3 cut(s) 181, 326, 472
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 3 cut(s) 181, 326, 472
BseRI GAGGAG 1 cut(s) 400
BshFI GGCC 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 461
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 1 cut(s) 315
Bsp1407I TGTACA 1 cut(s) 62
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 418
BspT107I GGYRCC 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 62
BsrI ACTGG 3 cut(s) 181, 326, 472
BssECI CCNNGG 1 cut(s) 222
BssNI GRCGYC 1 cut(s) 274
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 358
BstACI GRCGYC 1 cut(s) 274
BstAFI CTTAAG 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 53
BstENI CCTNNNNNAGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 476
BstSFI CTRYAG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 174, 333
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 63, 180
CviAII CATG 1 cut(s) 473
CviQI GTAC 2 cut(s) 63, 180
DdeI CTNAG 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 323
EcoNI CCTNNNNNAGG 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 476
FaiI YATR 5 cut(s) 91, 98, 185, 197, 474
FaqI GGGAC 1 cut(s) 461
FatI CATG 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 282, 429
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 321
HgaI GACGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 1 cut(s) 476
HpaII CCGG 1 cut(s) 321
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 4 cut(s) 263, 282, 335, 393
HpyAV CCTTC 2 cut(s) 140, 414
HpyCH4V TGCA 3 cut(s) 361, 416, 491
HpyF3I CTNAG 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 1 cut(s) 476
KpnI GGTACC 1 cut(s) 183
LpnPI CCDG 8 cut(s) 129, 162, 334, 339, 348, 378, 453, 503
MaeI CTAG 2 cut(s) 282, 429
MaeIII GTNAC 2 cut(s) 200, 239
MboII GAAGA 1 cut(s) 345
MfeI CAATTG 1 cut(s) 58
MluCI AATT 7 cut(s) 58, 111, 339, 366, 437, 462, 493
MmeI TCCRAC 2 cut(s) 234, 287
MnlI CCTC 8 cut(s) 62, 182, 198, 225, 270, 342, 418, 421
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 3 cut(s) 134, 165, 246
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 255
NlaIII CATG 1 cut(s) 476
NlaIV GGNNCC 1 cut(s) 181
NspI RCATGY 1 cut(s) 476
PciI ACATGT 1 cut(s) 472
PctI GAATGC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 7
PscI ACATGT 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 323
PstI CTGCAG 1 cut(s) 418
RsaI GTAC 2 cut(s) 64, 181
RsaNI GTAC 2 cut(s) 63, 180
SaqAI TTAA 3 cut(s) 134, 165, 246
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 323
SetI ASST 7 cut(s) 45, 54, 72, 190, 202, 246, 507
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 323
SmlI CTYRAG 2 cut(s) 245, 506
SmoI CTYRAG 2 cut(s) 245, 506
Sse9I AATT 7 cut(s) 58, 111, 339, 366, 437, 462, 493
SspMI CTAG 2 cut(s) 282, 429
StyI CCWWGG 1 cut(s) 222
TaqI TCGA 1 cut(s) 291
TasI AATT 7 cut(s) 58, 111, 339, 366, 437, 462, 493
TatI WGTACW 1 cut(s) 62
Tru1I TTAA 3 cut(s) 134, 165, 246
Tru9I TTAA 3 cut(s) 134, 165, 246
TscAI CASTG 2 cut(s) 181, 333
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 430
TspRI CASTG 2 cut(s) 181, 333
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 323
XagI CCTNNNNNAGG 1 cut(s) 195
XapI RAATTY 4 cut(s) 111, 339, 437, 493
XbaI TCTAGA 1 cut(s) 281
XceI RCATGY 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 282, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.