RchiOBHm_Chr5g0059191

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
64069908 .. 64070237
330 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33579

Sequence Viewer

Length: 330 bp
ATGCAATACAATGGCCTAAAAGGGCGTGTTCCTTTGGTTTTCTTCAACATGTCTTCTTTGACTATTTTGGGCCTTTCAGGAAACAGTTTCAAAGGTCGTCTTCCTGACAATATATGTCAGAATCTTCCTAGTATTCAAGGGTTGTACTTTTCTATCAACCAGTTTAATGGTCCACTTCCATCCCAATTATGGCAGTGCAAACAGCTTCTTGTATTGTCACTATCTGTTAACAATTTCAGTGGAAGTATACCCAGAAATATTGGCAACTTGACCCAGTTACAGAAGATTTATCTAGGCTTCAACAATTTGACATGTACTTACTCAAGTTAA

Protein Analysis

109

Amino Acids

12.11

Weight (kDa)

9.66

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 247
AfaI GTAC 2 cut(s) 146, 316
AfiI CCNNNNNNNGG 1 cut(s) 189
AflIII ACRYGT 2 cut(s) 48, 311
AgsI TTSAA 4 cut(s) 46, 91, 137, 301
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
AoxI GGCC 2 cut(s) 13, 70
AspS9I GGNCC 2 cut(s) 70, 170
AvaII GGWCC 1 cut(s) 170
BbsI GAAGAC 2 cut(s) 45, 92
BccI CCATC 1 cut(s) 187
BfaI CTAG 2 cut(s) 129, 293
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 70, 170
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BpiI GAAGAC 2 cut(s) 45, 92
BpuEI CTTGAG 1 cut(s) 307
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 160, 274
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 189
BseNI ACTGG 2 cut(s) 160, 274
BshFI GGCC 2 cut(s) 15, 72
BslI CCNNNNNNNGG 1 cut(s) 189
BsnI GGCC 2 cut(s) 15, 72
BspANI GGCC 2 cut(s) 15, 72
BsrI ACTGG 2 cut(s) 160, 274
BssNAI GTATAC 1 cut(s) 248
Bst1107I GTATAC 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 86
BstF5I GGATG 1 cut(s) 179
BstNSI RCATGY 2 cut(s) 52, 315
BstV2I GAAGAC 2 cut(s) 45, 92
BstXI CCANNNNNNTGG 1 cut(s) 167
BstZ17I GTATAC 1 cut(s) 248
BsuRI GGCC 2 cut(s) 15, 72
BtsCI GGATG 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 2 cut(s) 200, 244
Cfr13I GGNCC 2 cut(s) 70, 170
Csp6I GTAC 2 cut(s) 145, 315
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 2 cut(s) 49, 312
CviJI RGCY 4 cut(s) 15, 72, 205, 297
CviKI_1 RGCY 4 cut(s) 15, 72, 205, 297
CviQI GTAC 2 cut(s) 145, 315
Eco47I GGWCC 1 cut(s) 170
FaeI CATG 2 cut(s) 52, 315
FaiI YATR 6 cut(s) 50, 113, 115, 190, 248, 313
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 2 cut(s) 48, 311
FblI GTMKAC 1 cut(s) 247
FokI GGATG 1 cut(s) 166
FspBI CTAG 2 cut(s) 129, 293
HaeIII GGCC 2 cut(s) 15, 72
Hin1II CATG 2 cut(s) 52, 315
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 1 cut(s) 121
HpaI GTTAAC 1 cut(s) 229
Hpy166II GTNNAC 3 cut(s) 173, 229, 248
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 78, 104
Hpy8I GTNNAC 3 cut(s) 173, 229, 248
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 4, 198
Hsp92II CATG 2 cut(s) 52, 315
KspAI GTTAAC 1 cut(s) 229
LpnPI CCDG 5 cut(s) 63, 117, 173, 265, 287
MaeI CTAG 2 cut(s) 129, 293
MaeIII GTNAC 2 cut(s) 216, 276
MboII GAAGA 5 cut(s) 34, 45, 92, 116, 295
MluCI AATT 3 cut(s) 185, 232, 304
MseI TTAA 3 cut(s) 165, 228, 328
NlaIII CATG 2 cut(s) 52, 315
NmuCI GTSAC 1 cut(s) 216
NspI RCATGY 2 cut(s) 52, 315
PciI ACATGT 2 cut(s) 48, 311
PfeI GAWTC 1 cut(s) 121
PscI ACATGT 2 cut(s) 48, 311
PspPI GGNCC 2 cut(s) 70, 170
RsaI GTAC 2 cut(s) 146, 316
RsaNI GTAC 2 cut(s) 145, 315
SaqAI TTAA 3 cut(s) 165, 228, 328
Sau96I GGNCC 2 cut(s) 70, 170
SetI ASST 2 cut(s) 97, 207
SinI GGWCC 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 3 cut(s) 185, 232, 304
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 129, 293
TaaI ACNGT 1 cut(s) 86
TasI AATT 3 cut(s) 185, 232, 304
TatI WGTACW 2 cut(s) 144, 314
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 3 cut(s) 165, 228, 328
Tru9I TTAA 3 cut(s) 165, 228, 328
TscAI CASTG 2 cut(s) 200, 244
TseFI GTSAC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 216
TspRI CASTG 2 cut(s) 200, 244
VpaK11BI GGWCC 1 cut(s) 170
XceI RCATGY 2 cut(s) 52, 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 247
XspI CTAG 2 cut(s) 129, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.