RchiOBHm_Chr5g0010971

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
7259018 .. 7259293
276 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29168

Sequence Viewer

Length: 276 bp
ATGAAGAGCACTTGGTTCTTCCTCGTCTACTCTTGTTGTATGGCGGTTAGCTGCTTAACTGCAGCACCACAAACTAACATCACCACAGACAAATATGCTCTTCTTGCTCTCAAAGCCCGTATCACCAGTGATCCTCATAACTTGATCTTGACCAACTGGTCAATCACCACTCCTGTTTGCAACTGGGTTGGTGTTGCTTGTGGTAAACACCATCATCGAGTCACAGCCTTGAACCTCTCCTACTTTGGTCTCGAAGGCACTATTCTCCACAGCTAG

Protein Analysis

91

Amino Acids

10.07

Weight (kDa)

8.71

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 67 2e-10 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 157
AccI GTMKAC 1 cut(s) 27
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 125
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 2 cut(s) 51, 273
AluI AGCT 2 cut(s) 51, 273
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 51, 62
AsuHPI GGTGA 3 cut(s) 73, 115, 157
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 38, 74
BccI CCATC 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 274
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 2 cut(s) 52, 63
BlsI GCNGC 2 cut(s) 53, 64
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 126, 161, 188
BseNI ACTGG 3 cut(s) 126, 161, 188
BseXI GCAGC 2 cut(s) 38, 74
BsiHKAI GWGCWC 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 130, 144
BspACI CCGC 1 cut(s) 44
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 254
BsrI ACTGG 3 cut(s) 126, 161, 188
BssMI GATC 2 cut(s) 130, 144
Bst6I CTCTTC 1 cut(s) 105
BstKTI GATC 2 cut(s) 133, 147
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 2 cut(s) 130, 144
BstMWI GCNNNNNNNGC 2 cut(s) 104, 113
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 38, 74
BtsIMutI CAGTG 1 cut(s) 133
CviJI RGCY 4 cut(s) 51, 116, 227, 273
CviKI_1 RGCY 4 cut(s) 51, 116, 227, 273
DpnI GATC 2 cut(s) 132, 146
DpnII GATC 2 cut(s) 130, 144
DrdI GACNNNNNNGTC 1 cut(s) 157
DseDI GACNNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 254
FaiI YATR 3 cut(s) 41, 96, 138
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 52, 63
Fsp4HI GCNGC 2 cut(s) 52, 63
FspBI CTAG 1 cut(s) 274
GluI GCNGC 2 cut(s) 52, 63
HinfI GANTC 1 cut(s) 219
HphI GGTGA 3 cut(s) 73, 115, 157
Hpy166II GTNNAC 2 cut(s) 28, 206
Hpy188III TCNNGA 2 cut(s) 148, 251
Hpy8I GTNNAC 2 cut(s) 28, 206
HpyAV CCTTC 1 cut(s) 248
HpyCH4V TGCA 2 cut(s) 62, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 113
Kzo9I GATC 2 cut(s) 130, 144
LguI GCTCTTC 1 cut(s) 105
LpnPI CCDG 4 cut(s) 139, 142, 169, 186
Lsp1109I GCAGC 2 cut(s) 38, 74
MaeI CTAG 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 132, 146
MboI GATC 2 cut(s) 130, 144
MboII GAAGA 3 cut(s) 10, 16, 92
MhlI GDGCHC 1 cut(s) 11
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 3 cut(s) 32, 144, 245
MseI TTAA 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 104, 113
NdeII GATC 2 cut(s) 130, 144
NmuCI GTSAC 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 105
PkrI GCNGC 2 cut(s) 53, 64
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsrI GAACNNNNNNTAC 2 cut(s) 224, 256
PstI CTGCAG 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 2 cut(s) 52, 63
Sau3AI GATC 2 cut(s) 130, 144
SchI GAGTC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 11
SetI ASST 3 cut(s) 53, 237, 275
SfcI CTRYAG 1 cut(s) 60
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 274
TaqI TCGA 2 cut(s) 217, 252
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 51, 62
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.