pycom04g04980

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
4632791 .. 4634023
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04980.1

Sequence Viewer

Length: 717 bp
ATGCTGCGTATGGAGAGAAGTCGTTTCCTACTGTCGAGAATGTTGTCGAGGATACATTGCTTGTTTTATATCAATATGATGATTATGGCTAATTACTTTACTCCAAGTGCATTAGCAATAGCTCATACCAATTTCAGCACAGATCAGTCTACGCTTCTTGCTTTCAAAGCTCACATCACTAGTGACCCTCAAAACATCTTAACCGCCAACTGGTCCTCTGCCTCCAATTCCAACATTTGCAACTGGATTGGCGTTACCTGTGGTGCTCGCCACCACAGAGTCACGGCCTTAAATCTCTCGTACATGGGTCTTGCTGGAGTTATTCCTCCGCATCTAGGTAACCTCTCATTTCTTGTTGAGTTGGGCCTTCAGAATAATAGTTTTCATGGTCCCTTACCCCATGAACTGTCTCGTTTGCACCGGTTGAAGGCGATTAACTTTCAAAACAATAGGTTTATGGGAACCATTCCTTCGTGGTTTGGGTCCTTCCCTAAACTTCAAACCTTCACATTGGCCGATAATGGCTTCTCTGGTTCCATACCCGTTGCTATCTTCAACTTATCTGCACTCAAAATAATTATTTTGAGCGGGAACCAACTATCAGGTAGCATACCCAGAGAAATAGGCAACTTAACAATGGTGAAGGGCATATACCTTGACGACAACAAGTTCGAAGGACAATGCCCTAAAAGGCTCTGCCTTTGTGCCTGTCCTTAA

Protein Analysis

239

Amino Acids

26.43

Weight (kDa)

9.5

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 47 - 87 2e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 141 - 200 1.5e-06 Leucine rich repeat
LRR_8 PF13855 164 - 224 6.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 588
AccI GTMKAC 1 cut(s) 149
AciI CCGC 3 cut(s) 204, 329, 588
AcoI YGGCCR 1 cut(s) 513
AcuI CTGAAG 1 cut(s) 353
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 3 cut(s) 210, 335, 427
AgeI ACCGGT 1 cut(s) 420
AgsI TTSAA 5 cut(s) 166, 427, 443, 500, 556
AhlI ACTAGT 1 cut(s) 179
AluBI AGCT 2 cut(s) 122, 170
AluI AGCT 2 cut(s) 122, 170
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 414
AoxI GGCC 3 cut(s) 285, 364, 513
ApeKI GCWGC 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AsiGI ACCGGT 1 cut(s) 420
AspS9I GGNCC 4 cut(s) 213, 364, 389, 483
AsuHPI GGTGA 1 cut(s) 652
AsuII TTCGAA 1 cut(s) 672
AvaII GGWCC 3 cut(s) 213, 389, 483
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
Bbv12I GWGCWC 1 cut(s) 268
BceAI ACGGC 1 cut(s) 300
BciVI GTATCC 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 414
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 2 cut(s) 180, 335
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme18I GGWCC 3 cut(s) 213, 389, 483
BmgT120I GGNCC 4 cut(s) 213, 364, 389, 483
BmiI GGNNCC 5 cut(s) 391, 463, 484, 535, 593
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 336
Bpu14I TTCGAA 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 420
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 335, 427
Bse118I RCCGGY 1 cut(s) 420
Bse1I ACTGG 2 cut(s) 215, 248
Bse3DI GCAATG 1 cut(s) 55
BseLI CCNNNNNNNGG 3 cut(s) 210, 335, 427
BseMI GCAATG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 215, 248
BsgI GTGCAG 1 cut(s) 549
BshFI GGCC 3 cut(s) 287, 366, 515
BshTI ACCGGT 1 cut(s) 420
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 421
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 3 cut(s) 210, 335, 427
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 3 cut(s) 287, 366, 515
Bsp119I TTCGAA 1 cut(s) 672
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 3 cut(s) 204, 329, 588
BspANI GGCC 3 cut(s) 287, 366, 515
BspLI GGNNCC 5 cut(s) 391, 463, 484, 535, 593
BspT104I TTCGAA 1 cut(s) 672
BsrBI CCGCTC 1 cut(s) 588
BsrDI GCAATG 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 420
BsrI ACTGG 2 cut(s) 215, 248
BssAI RCCGGY 1 cut(s) 420
BssMI GATC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 33, 408
BstBI TTCGAA 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 268
BstEII GGTNACC 1 cut(s) 338
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 338
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 3 cut(s) 287, 366, 515
Cac8I GCNNGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 4 cut(s) 213, 364, 389, 483
Csp6I GTAC 1 cut(s) 301
CspAI ACCGGT 1 cut(s) 420
CviAII CATG 3 cut(s) 304, 386, 401
CviJI RGCY 8 cut(s) 89, 122, 170, 287, 366, 515, 525, 694
CviKI_1 RGCY 8 cut(s) 89, 122, 170, 287, 366, 515, 525, 694
CviQI GTAC 1 cut(s) 301
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 513
Eco47I GGWCC 3 cut(s) 213, 389, 483
Eco57I CTGAAG 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 338
EcoO109I RGGNCCY 1 cut(s) 483
EcoO65I GGTNACC 1 cut(s) 338
FaeI CATG 3 cut(s) 307, 389, 404
FaqI GGGAC 1 cut(s) 375
FatI CATG 3 cut(s) 303, 385, 400
FauI CCCGC 1 cut(s) 581
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 180, 335
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 3 cut(s) 287, 366, 515
HapII CCGG 1 cut(s) 421
Hin1II CATG 3 cut(s) 307, 389, 404
HinfI GANTC 1 cut(s) 279
HpaII CCGG 1 cut(s) 421
HphI GGTGA 1 cut(s) 652
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 7 cut(s) 377, 421, 480, 496, 514, 637, 668
HpyCH4III ACNGT 2 cut(s) 33, 408
HpyCH4V TGCA 4 cut(s) 110, 240, 418, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 3 cut(s) 307, 389, 404
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 8 cut(s) 196, 229, 271, 300, 434, 516, 588, 628
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 180, 335
MaeIII GTNAC 4 cut(s) 182, 253, 280, 338
MalI GATC 1 cut(s) 144
MbiI CCGCTC 1 cut(s) 588
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 4 cut(s) 91, 130, 226, 576
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 6 cut(s) 42, 198, 226, 232, 336, 353
MseI TTAA 5 cut(s) 200, 290, 435, 632, 715
MspI CCGG 1 cut(s) 421
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 1 cut(s) 142
NlaIII CATG 3 cut(s) 307, 389, 404
NlaIV GGNNCC 5 cut(s) 391, 463, 484, 535, 593
NmuCI GTSAC 2 cut(s) 182, 280
NspV TTCGAA 1 cut(s) 672
PinAI ACCGGT 1 cut(s) 420
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 483
Psp5II RGGWCCY 1 cut(s) 483
PspEI GGTNACC 1 cut(s) 338
PspN4I GGNNCC 5 cut(s) 391, 463, 484, 535, 593
PspPI GGNCC 4 cut(s) 213, 364, 389, 483
PspPPI RGGWCCY 1 cut(s) 483
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SaqAI TTAA 5 cut(s) 200, 290, 435, 632, 715
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 4 cut(s) 213, 364, 389, 483
SchI GAGTC 1 cut(s) 288
SduI GDGCHC 1 cut(s) 268
SetI ASST 9 cut(s) 124, 172, 260, 340, 345, 455, 506, 607, 657
SfaNI GCATC 1 cut(s) 340
SfuI TTCGAA 1 cut(s) 672
SinI GGWCC 3 cut(s) 213, 389, 483
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 4 cut(s) 91, 130, 226, 576
SsiI CCGC 3 cut(s) 204, 329, 588
SspMI CTAG 2 cut(s) 180, 335
TaaI ACNGT 2 cut(s) 33, 408
TaqI TCGA 3 cut(s) 35, 47, 672
TasI AATT 4 cut(s) 91, 130, 226, 576
Tru1I TTAA 5 cut(s) 200, 290, 435, 632, 715
Tru9I TTAA 5 cut(s) 200, 290, 435, 632, 715
TseFI GTSAC 2 cut(s) 182, 280
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 182, 280
TspDTI ATGAA 2 cut(s) 374, 417
VpaK11BI GGWCC 3 cut(s) 213, 389, 483
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 2 cut(s) 180, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.