Rmu_sc0008397.1_g000007

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008397.1
OG0000229
Physical Location & Seq
Forward (+)
28025 .. 28525
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008397.1_g000007.1.cds

Sequence Viewer

Length: 501 bp
atggcagtacaaaccaaccttaacatcaccacagaccggtctgctcttcttgctctcaaagcccgtatcaccaatgaccctcaaaacatagtcttcaccaactggtcaaccactactcttgtttgcaactgggttggagtcacttgtggtgcaatccattatcgaattgcagagttgaacctctcttactttgatctcacaggcaccattcctccggagctgggcaacttatcttttcttgttgatctggacttcagaaataatagttttcatggtaccttgcctcaagaattggctcgcctgcgccggttgaagtttattaacttggaatacaacaagtttatgggagtgattccatcatggtttggatccttgtcgaaacttcaaatattcagtttttatagtaatcaattttctggttccatctcagctacaatattcaacttatctgctctgcaaataattgatcttggttataatcgattctcaggtacgaactaa

Protein Analysis

166

Amino Acids

18.68

Weight (kDa)

8.66

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 203, 275
AccIII TCCGGA 1 cut(s) 214
AclWI GGATC 2 cut(s) 363, 376
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 3 cut(s) 9, 277, 493
AfiI CCNNNNNNNGG 2 cut(s) 36, 221
AgeI ACCGGT 1 cut(s) 36
AgsI TTSAA 4 cut(s) 178, 313, 386, 442
AluBI AGCT 2 cut(s) 220, 431
AluI AGCT 2 cut(s) 220, 431
AlwI GGATC 2 cut(s) 363, 376
Aor13HI TCCGGA 1 cut(s) 214
AsiGI ACCGGT 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 306
AsuHPI GGTGA 3 cut(s) 19, 61, 88
BamHI GGATCC 1 cut(s) 368
BanI GGYRCC 2 cut(s) 203, 275
BbsI GAAGAC 1 cut(s) 85
BccI CCATC 2 cut(s) 364, 431
BmiI GGNNCC 4 cut(s) 205, 277, 370, 421
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 270
Bsa29I ATCGAT 1 cut(s) 481
BsaWI WCCGGW 2 cut(s) 36, 214
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 221
Bse118I RCCGGY 2 cut(s) 36, 306
Bse1I ACTGG 2 cut(s) 107, 134
BseAI TCCGGA 1 cut(s) 214
BseCI ATCGAT 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 36, 221
BseMII CTCAG 2 cut(s) 441, 501
BseNI ACTGG 2 cut(s) 107, 134
BseYI CCCAGC 1 cut(s) 220
BshNI GGYRCC 2 cut(s) 203, 275
BshTI ACCGGT 1 cut(s) 36
BshVI ATCGAT 1 cut(s) 481
BsiSI CCGG 3 cut(s) 37, 215, 307
BslI CCNNNNNNNGG 2 cut(s) 36, 221
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 4 cut(s) 193, 244, 368, 466
BspCNI CTCAG 2 cut(s) 440, 500
BspDI ATCGAT 1 cut(s) 481
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 4 cut(s) 205, 277, 370, 421
BspPI GGATC 2 cut(s) 363, 376
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 203, 275
BsrFI RCCGGY 2 cut(s) 36, 306
BsrI ACTGG 2 cut(s) 107, 134
BssAI RCCGGY 2 cut(s) 36, 306
BssMI GATC 4 cut(s) 193, 244, 368, 466
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 298, 302
BstDEI CTNAG 2 cut(s) 427, 487
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 4 cut(s) 196, 247, 371, 469
BstMBI GATC 4 cut(s) 193, 244, 368, 466
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
Bsu15I ATCGAT 1 cut(s) 481
BsuTUI ATCGAT 1 cut(s) 481
Cac8I GCNNGC 2 cut(s) 298, 302
CfoI GCGC 1 cut(s) 306
Cfr10I RCCGGY 2 cut(s) 36, 306
ClaI ATCGAT 1 cut(s) 481
Csp6I GTAC 3 cut(s) 8, 276, 492
CspAI ACCGGT 1 cut(s) 36
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 2 cut(s) 272, 360
CviJI RGCY 4 cut(s) 62, 220, 296, 431
CviKI_1 RGCY 4 cut(s) 62, 220, 296, 431
CviQI GTAC 3 cut(s) 8, 276, 492
DdeI CTNAG 2 cut(s) 427, 487
DpnI GATC 4 cut(s) 195, 246, 370, 468
DpnII GATC 4 cut(s) 193, 244, 368, 466
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 238
FaeI CATG 2 cut(s) 275, 363
FaiI YATR 6 cut(s) 89, 273, 344, 361, 402, 477
FatI CATG 2 cut(s) 271, 359
GlaI GCGC 1 cut(s) 305
GsaI CCCAGC 1 cut(s) 224
HapII CCGG 3 cut(s) 37, 215, 307
HhaI GCGC 1 cut(s) 306
Hin1II CATG 2 cut(s) 275, 363
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 3 cut(s) 138, 352, 483
HpaII CCGG 3 cut(s) 37, 215, 307
HphI GGTGA 3 cut(s) 19, 61, 88
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 3 cut(s) 215, 248, 287
Hpy8I GTNNAC 1 cut(s) 108
HpyCH4V TGCA 4 cut(s) 126, 152, 170, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
HpyF3I CTNAG 2 cut(s) 427, 487
Hsp92II CATG 2 cut(s) 275, 363
HspAI GCGC 1 cut(s) 304
Kpn2I TCCGGA 1 cut(s) 214
KpnI GGTACC 1 cut(s) 279
Kzo9I GATC 4 cut(s) 193, 244, 368, 466
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 139
MalI GATC 4 cut(s) 195, 246, 370, 468
MboI GATC 4 cut(s) 193, 244, 368, 466
MboII GAAGA 2 cut(s) 38, 85
MflI RGATCY 1 cut(s) 368
MluCI AATT 4 cut(s) 165, 290, 410, 462
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 4 cut(s) 90, 191, 222, 294
MroI TCCGGA 1 cut(s) 214
MseI TTAA 2 cut(s) 21, 321
MspI CCGG 3 cut(s) 37, 215, 307
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NdeII GATC 4 cut(s) 193, 244, 368, 466
NlaIII CATG 2 cut(s) 275, 363
NlaIV GGNNCC 4 cut(s) 205, 277, 370, 421
NmuCI GTSAC 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 51
PfeI GAWTC 2 cut(s) 352, 483
PinAI ACCGGT 1 cut(s) 36
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PsiI TTATAA 1 cut(s) 477
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 4 cut(s) 205, 277, 370, 421
PsrI GAACNNNNNNTAC 2 cut(s) 170, 202
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 3 cut(s) 9, 277, 493
RsaNI GTAC 3 cut(s) 8, 276, 492
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 21, 321
Sau3AI GATC 4 cut(s) 193, 244, 368, 466
SchI GAGTC 1 cut(s) 147
SetI ASST 6 cut(s) 21, 183, 222, 281, 433, 493
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 4 cut(s) 165, 290, 410, 462
SspI AATATT 2 cut(s) 390, 438
TaqI TCGA 3 cut(s) 163, 377, 481
TasI AATT 4 cut(s) 165, 290, 410, 462
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 2 cut(s) 352, 483
Tru1I TTAA 2 cut(s) 21, 321
Tru9I TTAA 2 cut(s) 21, 321
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.