Rh4DG110600

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
17257921 .. 17259183
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG110600.1

Sequence Viewer

Length: 1263 bp
ATGGAAAAGCCAAAAGTTCTCCTTTATGGCGTTCTGTTGCTCCAGTTTTTATGCTCCCTTCACTTTGCTGTATCCTCAGCTAATTCCAACTTCACTGATCAATCCGCTCTCCTTGCCATACAATCTAAGCACACTTTTGATCCAACCAAAACTGTCTTGGGTGGTAACTGGACCACTACAACAAGCTTTTGTAATTGGATTGGGGTCTCTTGTAGTAAACAGAGGCAAAGGGTCACAGCCCTGAATCTGTCGTATATGGGACTCCAAGGCACCATTTCCCCCCATGTTGGCAACCTCTCCTCCTTAGTTTCACTTGATCTTCGAAATAACAGCTTCATTGGGTTGCTGCCACATGAAATCAGTCGTCTACCTCGCTTGAGGATACTGGTACTTCAAGAAAACGAGCTGGAAGGAAGTATCCCCCTGACTTTACATCAATGCCAACAGCTTGAAATCATATCCCTTGCAGCAAACAGGCTGAACGGTCTTATACCTAAAGAGTTGGGTCTCTTGCCCAGACTCCAGCAATTATACCTTGGGAAAAACAGTCTCATGTCTGGTGAGATTCCATCATCTTTGGGGAACATTTCAACACTAGAAAGATTGAGTTTGGACCAATGTGGCCTCACAGGTTCCTTCCCCTCTGCTCTGTTAAATCTATCTTCTCTAGTTGCTATTTCTCTATATGACAAGAACATTTCAGGATTTCTTCCCATTGATATTTGCGATAACCATTGGCCAAATGTTCAAATCCTTTCTGTTTCTTATAACAAATTCAGTGGTCTAATCCCATCATGGATACATCAATGTGCGCAGCTTGTGACCTTATCTTTGTCATACAATAGTCTTGTTGGGAGTATTCCTAGAGAAATTGGGAGTTTACAGTATCTTGAGGAGCTTTACCTTGATGGTAATAACCTAACTGGTACCATACCTCCAACAATAGGTAACATTACTAACTTGAAATACTTGGGTGTGGAACTTAATAACATCCAGGGAAGCATTCCTCCTGAGTTGGGGCATCTGTCGAATTTAACTTCTCTTCTATTTTCTTCTAATGGTCTGACTGGAGTGTTGCCTCAACAAATATTCAATATCTCCTCCCTAAAAAAACTTGCAGGAAGTAATAATGCCCTGTCAGGCGAGCTTCCTAATTCATCAAATACAGTTCACCTACCAAACCTTGAATCCTTCCAGTTTTCTAACAATCACATTACCGGAAACATTCCATCATACTTTTCAAATTTTACCAGCTTATTTTAA

Protein Analysis

420

Amino Acids

45.79

Weight (kDa)

6.55

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 78 - 136 7.9e-06 Leucine rich repeat
LRR_8 PF13855 247 - 307 1.3e-09 Leucine rich repeat
LRR_14 PF23598 271 - 348 4.3e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 768
Acc16I TGCGCA 1 cut(s) 813
Acc65I GGTACC 1 cut(s) 926
AccB1I GGYRCC 2 cut(s) 269, 926
AccBSI CCGCTC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 367
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 737
AcsI RAATTY 3 cut(s) 773, 1030, 1243
AfaI GTAC 2 cut(s) 390, 928
AfiI CCNNNNNNNGG 3 cut(s) 287, 944, 1016
AgsI TTSAA 8 cut(s) 395, 452, 591, 749, 964, 1093, 1187, 1242
AjnI CCWGG 1 cut(s) 993
AluBI AGCT 9 cut(s) 80, 186, 333, 406, 448, 817, 898, 1147, 1254
AluI AGCT 9 cut(s) 80, 186, 333, 406, 448, 817, 898, 1147, 1254
Alw26I GTCTC 3 cut(s) 211, 512, 554
AlwI GGATC 1 cut(s) 134
AoxI GGCC 2 cut(s) 622, 737
ApeKI GCWGC 3 cut(s) 346, 467, 814
ApoI RAATTY 3 cut(s) 773, 1030, 1243
ArsI GACNNNNNNTTYG 2 cut(s) 814, 846
Asp718I GGTACC 1 cut(s) 926
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 2 cut(s) 171, 613
AsuHPI GGTGA 2 cut(s) 572, 1163
AsuII TTCGAA 1 cut(s) 322
AvaII GGWCC 2 cut(s) 171, 613
BalI TGGCCA 1 cut(s) 739
BanI GGYRCC 2 cut(s) 269, 926
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 3 cut(s) 333, 479, 826
BccI CCATC 4 cut(s) 577, 799, 902, 1237
BciT130I CCWGG 1 cut(s) 995
BciVI GTATCC 4 cut(s) 82, 375, 428, 792
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 3 cut(s) 211, 512, 554
BfaI CTAG 3 cut(s) 596, 668, 864
BfuI GTATCC 4 cut(s) 82, 375, 428, 792
BisI GCNGC 3 cut(s) 347, 468, 815
BlsI GCNGC 3 cut(s) 348, 469, 816
Bme1390I CCNGG 1 cut(s) 995
Bme18I GGWCC 2 cut(s) 171, 613
BmgT120I GGNCC 2 cut(s) 171, 613
BmiI GGNNCC 3 cut(s) 271, 634, 928
BmrFI CCNGG 1 cut(s) 995
BmsI GCATC 1 cut(s) 1030
BpmI CTGGAG 3 cut(s) 26, 506, 1089
Bpu10I CCTNAGC 1 cut(s) 76
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 2 cut(s) 397, 911
BsaI GGTCTC 2 cut(s) 211, 512
BsaJI CCNNGG 3 cut(s) 265, 535, 994
BsaWI WCCGGW 1 cut(s) 1217
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 919, 949
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 944, 1016
Bse1I ACTGG 6 cut(s) 43, 173, 390, 928, 1072, 1195
BseBI CCWGG 1 cut(s) 995
BseDI CCNNGG 3 cut(s) 265, 535, 994
BseGI GGATG 1 cut(s) 990
BseLI CCNNNNNNNGG 3 cut(s) 287, 944, 1016
BseMII CTCAG 2 cut(s) 90, 1002
BseNI ACTGG 6 cut(s) 43, 173, 390, 928, 1072, 1195
BseRI GAGGAG 3 cut(s) 289, 908, 1090
BseXI GCAGC 3 cut(s) 333, 479, 826
BshFI GGCC 2 cut(s) 624, 739
BshNI GGYRCC 2 cut(s) 269, 926
BsiSI CCGG 1 cut(s) 1218
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 3 cut(s) 287, 944, 1016
BsmAI GTCTC 3 cut(s) 211, 512, 554
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 1002
BsnI GGCC 2 cut(s) 624, 739
Bso31I GGTCTC 2 cut(s) 211, 512
Bsp119I TTCGAA 1 cut(s) 322
Bsp143I GATC 3 cut(s) 97, 139, 316
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 624, 739
BspCNI CTCAG 2 cut(s) 89, 1003
BspLI GGNNCC 3 cut(s) 271, 634, 928
BspPI GGATC 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 322
BspT107I GGYRCC 2 cut(s) 269, 926
BspTNI GGTCTC 2 cut(s) 211, 512
BsrBI CCGCTC 1 cut(s) 107
BsrI ACTGG 6 cut(s) 43, 173, 390, 928, 1072, 1195
BssECI CCNNGG 3 cut(s) 265, 535, 994
BssMI GATC 3 cut(s) 97, 139, 316
BssT1I CCWWGG 2 cut(s) 265, 535
Bst2UI CCWGG 1 cut(s) 995
Bst4CI ACNGT 5 cut(s) 154, 485, 548, 885, 1168
Bst6I CTCTTC 1 cut(s) 1047
BstBI TTCGAA 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 1145
BstDEI CTNAG 4 cut(s) 76, 126, 304, 1011
BstF5I GGATG 1 cut(s) 990
BstHHI GCGC 1 cut(s) 814
BstKTI GATC 3 cut(s) 100, 142, 319
BstMAI GTCTC 3 cut(s) 211, 512, 554
BstMBI GATC 3 cut(s) 97, 139, 316
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 995
BstSCI CCNGG 1 cut(s) 993
BstV1I GCAGC 3 cut(s) 333, 479, 826
BsuI GTATCC 4 cut(s) 82, 375, 428, 792
BsuRI GGCC 2 cut(s) 624, 739
BtsCI GGATG 1 cut(s) 990
BtsIMutI CAGTG 2 cut(s) 93, 784
Cac8I GCNNGC 1 cut(s) 1145
CfoI GCGC 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 171, 613
Csp6I GTAC 2 cut(s) 389, 927
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CviAII CATG 4 cut(s) 284, 353, 553, 795
CviQI GTAC 2 cut(s) 389, 927
DdeI CTNAG 4 cut(s) 76, 126, 304, 1011
DpnI GATC 3 cut(s) 99, 141, 318
DpnII GATC 3 cut(s) 97, 139, 316
EaeI YGGCCR 1 cut(s) 737
Eam1104I CTCTTC 1 cut(s) 1047
EarI CTCTTC 1 cut(s) 1047
Eco130I CCWWGG 2 cut(s) 265, 535
Eco31I GGTCTC 2 cut(s) 211, 512
Eco47I GGWCC 2 cut(s) 171, 613
EcoRII CCWGG 1 cut(s) 993
EcoT14I CCWWGG 2 cut(s) 265, 535
ErhI CCWWGG 2 cut(s) 265, 535
FaeI CATG 4 cut(s) 287, 356, 556, 798
FalI AAGNNNNNCTT 1 cut(s) 38
FaqI GGGAC 1 cut(s) 273
FatI CATG 4 cut(s) 283, 352, 552, 794
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 3 cut(s) 347, 468, 815
FokI GGATG 1 cut(s) 977
Fsp4HI GCNGC 3 cut(s) 347, 468, 815
FspBI CTAG 3 cut(s) 596, 668, 864
FspI TGCGCA 1 cut(s) 813
GlaI GCGC 1 cut(s) 813
GluI GCNGC 3 cut(s) 347, 468, 815
GsuI CTGGAG 3 cut(s) 26, 506, 1089
HaeIII GGCC 2 cut(s) 624, 739
HapII CCGG 1 cut(s) 1218
HhaI GCGC 1 cut(s) 814
Hin1II CATG 4 cut(s) 287, 356, 556, 798
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 5 cut(s) 244, 261, 519, 565, 1187
HpaII CCGG 1 cut(s) 1218
HphI GGTGA 2 cut(s) 572, 1163
Hpy166II GTNNAC 4 cut(s) 218, 368, 881, 1171
Hpy188I TCNGA 1 cut(s) 1065
Hpy188III TCNNGA 4 cut(s) 395, 702, 890, 1010
Hpy8I GTNNAC 4 cut(s) 218, 368, 881, 1171
HpyAV CCTTC 4 cut(s) 68, 404, 646, 1201
HpyCH4III ACNGT 5 cut(s) 154, 485, 548, 885, 1168
HpyCH4V TGCA 2 cut(s) 467, 1118
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 4 cut(s) 76, 126, 304, 1011
Hsp92II CATG 4 cut(s) 287, 356, 556, 798
HspAI GCGC 1 cut(s) 812
KpnI GGTACC 1 cut(s) 930
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 97, 139, 316
LmnI GCTCC 3 cut(s) 45, 59, 895
Lsp1109I GCAGC 3 cut(s) 333, 479, 826
LweI GCATC 1 cut(s) 1030
MaeI CTAG 3 cut(s) 596, 668, 864
MaeIII GTNAC 4 cut(s) 164, 232, 820, 947
MalI GATC 3 cut(s) 99, 141, 318
MbiI CCGCTC 1 cut(s) 107
MboI GATC 3 cut(s) 97, 139, 316
MboII GAAGA 5 cut(s) 311, 654, 701, 1034, 1044
MlsI TGGCCA 1 cut(s) 739
MluCI AATT 8 cut(s) 82, 193, 527, 773, 870, 1030, 1153, 1243
MluNI TGGCCA 1 cut(s) 739
MlyI GAGTC 2 cut(s) 255, 513
MmeI TCCRAC 3 cut(s) 111, 167, 962
Mox20I TGGCCA 1 cut(s) 739
MscI TGGCCA 1 cut(s) 739
MseI TTAA 4 cut(s) 653, 984, 1034, 1261
MslI CAYNNNNRTG 1 cut(s) 807
Msp20I TGGCCA 1 cut(s) 739
MspI CCGG 1 cut(s) 1218
MspR9I CCNGG 1 cut(s) 995
Mva1269I GAATGC 1 cut(s) 1002
MvaI CCWGG 1 cut(s) 995
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 3 cut(s) 97, 139, 316
NlaIII CATG 4 cut(s) 287, 356, 556, 798
NlaIV GGNNCC 3 cut(s) 271, 634, 928
NmuCI GTSAC 2 cut(s) 232, 820
NsbI TGCGCA 1 cut(s) 813
NspV TTCGAA 1 cut(s) 322
PctI GAATGC 1 cut(s) 1002
PfeI GAWTC 3 cut(s) 244, 565, 1187
PkrI GCNGC 3 cut(s) 348, 469, 816
PleI GAGTC 2 cut(s) 255, 513
PpsI GAGTC 2 cut(s) 255, 513
PsiI TTATAA 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 993
PspGI CCWGG 1 cut(s) 993
PspN4I GGNNCC 3 cut(s) 271, 634, 928
PspPI GGNCC 2 cut(s) 171, 613
RsaI GTAC 2 cut(s) 390, 928
RsaNI GTAC 2 cut(s) 389, 927
RseI CAYNNNNRTG 1 cut(s) 807
SaqAI TTAA 4 cut(s) 653, 984, 1034, 1261
SatI GCNGC 3 cut(s) 347, 468, 815
Sau3AI GATC 3 cut(s) 97, 139, 316
Sau96I GGNCC 2 cut(s) 171, 613
SchI GAGTC 2 cut(s) 255, 513
ScrFI CCNGG 1 cut(s) 995
SfaNI GCATC 1 cut(s) 1030
SfuI TTCGAA 1 cut(s) 322
SinI GGWCC 2 cut(s) 171, 613
SmiMI CAYNNNNRTG 1 cut(s) 807
SmlI CTYRAG 2 cut(s) 376, 890
SmoI CTYRAG 2 cut(s) 376, 890
Sse9I AATT 8 cut(s) 82, 193, 527, 773, 870, 1030, 1153, 1243
SsiI CCGC 1 cut(s) 105
SspI AATATT 1 cut(s) 1089
SspMI CTAG 3 cut(s) 596, 668, 864
StyD4I CCNGG 1 cut(s) 993
StyI CCWWGG 2 cut(s) 265, 535
TaaI ACNGT 5 cut(s) 154, 485, 548, 885, 1168
TaqI TCGA 2 cut(s) 322, 1028
TasI AATT 8 cut(s) 82, 193, 527, 773, 870, 1030, 1153, 1243
TfiI GAWTC 3 cut(s) 244, 565, 1187
Tru1I TTAA 4 cut(s) 653, 984, 1034, 1261
Tru9I TTAA 4 cut(s) 653, 984, 1034, 1261
TscAI CASTG 2 cut(s) 100, 784
TseFI GTSAC 2 cut(s) 232, 820
TseI GCWGC 3 cut(s) 346, 467, 814
Tsp45I GTSAC 2 cut(s) 232, 820
TspDTI ATGAA 3 cut(s) 325, 369, 1146
TspRI CASTG 2 cut(s) 100, 784
VpaK11BI GGWCC 2 cut(s) 171, 613
XapI RAATTY 3 cut(s) 773, 1030, 1243
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 3 cut(s) 596, 668, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.