Rmu_sc0001699.1_g000007

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001699.1
OG0000229
Physical Location & Seq
Forward (+)
42165 .. 42665
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001699.1_g000007.1.cds

Sequence Viewer

Length: 501 bp
atggtagcacaaaccaaccttaacatcaccacagaccggtctgcacttctttctctcaaagcccatatcactagtgaccctcaaaacatgatcttcaccaactggtcaaccaccaccccagtttgcaattgggttggagtcacttgtggtgcacgccatcatcgaatcataaagttgaatctctcttactttggtctcacaggcaccattcctccagagctaggcaacttatcttttcttgttgatatggacttcaaaaataatagttttcatggtaccttgcctcaagaattggctcacctgcgtaggttgatgtttatcagcttgagaaacaacaagttcaagggaatctttccattatggtttgggtccttattcaaacttcaagtatttgatttgtttggtaatcaattttcaggttccttaccagccacaatcttcaacttatctgctatgcaaataattgatctgagttataaccaactctcaggtatgaactaa

Protein Analysis

166

Amino Acids

18.69

Weight (kDa)

9.39

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AarI CACCTGC 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 309
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 203, 275
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 36, 221
AgeI ACCGGT 1 cut(s) 36
AgsI TTSAA 6 cut(s) 178, 256, 343, 379, 386, 442
AhlI ACTAGT 1 cut(s) 71
AluBI AGCT 2 cut(s) 220, 324
AluI AGCT 2 cut(s) 220, 324
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 150
AsiGI ACCGGT 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 19, 88, 290
AvaII GGWCC 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 2 cut(s) 203, 275
Bbv12I GWGCWC 1 cut(s) 154
BccI CCATC 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 200
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 2 cut(s) 72, 221
BfuAI ACCTGC 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 4 cut(s) 205, 277, 370, 421
BmrI ACTGGG 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 270, 346
BsaBI GATNNNNATC 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 221
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 2 cut(s) 107, 119
Bse8I GATNNNNATC 1 cut(s) 317
BseJI GATNNNNATC 1 cut(s) 317
BseLI CCNNNNNNNGG 2 cut(s) 36, 221
BseMII CTCAG 2 cut(s) 461, 501
BseNI ACTGG 2 cut(s) 107, 119
BseSI GKGCMC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 27
BshNI GGYRCC 2 cut(s) 203, 275
BshTI ACCGGT 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 36, 221
BsmAI GTCTC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 90, 466
BspCNI CTCAG 2 cut(s) 462, 500
BspLI GGNNCC 4 cut(s) 205, 277, 370, 421
BspMI ACCTGC 1 cut(s) 309
BspT107I GGYRCC 2 cut(s) 203, 275
BspTNI GGTCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 36
BsrI ACTGG 2 cut(s) 107, 119
BssAI RCCGGY 1 cut(s) 36
BssMI GATC 2 cut(s) 90, 466
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 470, 487
BstKTI GATC 2 cut(s) 93, 469
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 90, 466
BstSLI GKGCMC 1 cut(s) 154
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 276
CspAI ACCGGT 1 cut(s) 36
CviAII CATG 2 cut(s) 88, 272
CviJI RGCY 5 cut(s) 62, 220, 296, 324, 431
CviKI_1 RGCY 5 cut(s) 62, 220, 296, 324, 431
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 2 cut(s) 470, 487
DpnI GATC 2 cut(s) 92, 468
DpnII GATC 2 cut(s) 90, 466
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 369
FaeI CATG 2 cut(s) 91, 275
FaiI YATR 9 cut(s) 66, 89, 170, 248, 273, 361, 455, 477, 494
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FatI CATG 2 cut(s) 87, 271
FspBI CTAG 2 cut(s) 72, 221
GsuI CTGGAG 1 cut(s) 198
HapII CCGG 1 cut(s) 37
Hin1II CATG 2 cut(s) 91, 275
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 4 cut(s) 138, 165, 178, 348
HpaII CCGG 1 cut(s) 37
HphI GGTGA 3 cut(s) 19, 88, 290
Hpy166II GTNNAC 2 cut(s) 108, 152
Hpy188I TCNGA 1 cut(s) 471
Hpy188III TCNNGA 2 cut(s) 215, 287
Hpy8I GTNNAC 2 cut(s) 108, 152
HpyCH4V TGCA 4 cut(s) 44, 126, 152, 457
HpyF3I CTNAG 2 cut(s) 470, 487
Hsp92II CATG 2 cut(s) 91, 275
KpnI GGTACC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 90, 466
LpnPI CCDG 9 cut(s) 50, 88, 132, 186, 228, 314, 402, 441, 474
MaeI CTAG 2 cut(s) 72, 221
MaeIII GTNAC 2 cut(s) 74, 139
MalI GATC 2 cut(s) 92, 468
MboI GATC 2 cut(s) 90, 466
MboII GAAGA 2 cut(s) 85, 430
MfeI CAATTG 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 4 cut(s) 127, 290, 410, 462
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 3 cut(s) 90, 222, 294
MseI TTAA 1 cut(s) 21
MspI CCGG 1 cut(s) 37
MunI CAATTG 1 cut(s) 127
NdeII GATC 2 cut(s) 90, 466
NlaIII CATG 2 cut(s) 91, 275
NlaIV GGNNCC 4 cut(s) 205, 277, 370, 421
NmuCI GTSAC 2 cut(s) 74, 139
PaqCI CACCTGC 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 3 cut(s) 165, 178, 348
PinAI ACCGGT 1 cut(s) 36
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 369
PsiI TTATAA 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 369
PspN4I GGNNCC 4 cut(s) 205, 277, 370, 421
PspPI GGNCC 1 cut(s) 369
PspPPI RGGWCCY 1 cut(s) 369
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 2 cut(s) 90, 466
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 154
SetI ASST 8 cut(s) 21, 222, 281, 303, 311, 326, 421, 493
SinI GGWCC 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 285, 325
SmoI CTYRAG 2 cut(s) 285, 325
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 4 cut(s) 127, 290, 410, 462
SspMI CTAG 2 cut(s) 72, 221
TaqI TCGA 1 cut(s) 163
TasI AATT 4 cut(s) 127, 290, 410, 462
TfiI GAWTC 3 cut(s) 165, 178, 348
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 2 cut(s) 74, 139
Tsp45I GTSAC 2 cut(s) 74, 139
TspDTI ATGAA 1 cut(s) 260
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 369
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XspI CTAG 2 cut(s) 72, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.