MD03G1281400.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
36223508 .. 36223837
330 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1281400.v1.1.491

Sequence Viewer

Length: 330 bp
ATGGGTCTTGCCGGGGTTATTCCTCCGCATCTAGGCAACCTCACATTTCTCGTTGAGTTGGGCCTTACGAATAATAGTTTTCATGGTCCCCTACCCCAAGAACTGTCTCGTTTGCGCCGGTTGAAGACGATTAACTTTGGATACAACAACTTCATCGGAACCATTCCTTCATGGTTTGGGTCCTTCGCTAAACTTCAAGCCTTCCAATTGCACGGTAATGGCTTCTCTGGTTTCATACCCACTGCTATCTTCAACTTATCTGCACTCGAAACAATTAACCTGAGCGGGAACCAACTATCAGGTACGTATGTACCACCATTACCAACCTAG

Protein Analysis

110

Amino Acids

11.8

Weight (kDa)

9.52

Isoelectric Point (pI)

21.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 17 - 74 9.3e-06 Leucine rich repeat
LRR_8 PF13855 56 - 99 9.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 285
AciI CCGC 2 cut(s) 26, 285
AfaI GTAC 2 cut(s) 304, 312
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 3 cut(s) 124, 197, 253
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 1 cut(s) 61
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 3 cut(s) 61, 86, 180
AsuC2I CCSGG 1 cut(s) 13
AvaII GGWCC 2 cut(s) 86, 180
BaeI ACNNNNGTAYC 4 cut(s) 294, 294, 327, 327
BbsI GAAGAC 1 cut(s) 131
BciVI GTATCC 1 cut(s) 134
BcnI CCSGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 2 cut(s) 32, 328
BfuI GTATCC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 2 cut(s) 86, 180
BmgT120I GGNCC 3 cut(s) 61, 86, 180
BmiI GGNNCC 4 cut(s) 88, 160, 181, 290
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 13
BsaAI YACGTR 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 63
BsiSI CCGG 2 cut(s) 12, 118
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 72
BsnI GGCC 1 cut(s) 63
BspACI CCGC 2 cut(s) 26, 285
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 4 cut(s) 88, 160, 181, 290
BsrBI CCGCTC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 105, 215
BstBAI YACGTR 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 281
BstHHI GCGC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 11
BstSNI TACGTA 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 131
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 3 cut(s) 61, 86, 180
Csp6I GTAC 2 cut(s) 303, 311
CviAII CATG 2 cut(s) 83, 171
CviJI RGCY 3 cut(s) 63, 200, 222
CviKI_1 RGCY 3 cut(s) 63, 200, 222
CviQI GTAC 2 cut(s) 303, 311
DdeI CTNAG 1 cut(s) 281
Eco105I TACGTA 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 86, 180
EcoO109I RGGNCCY 1 cut(s) 180
FaeI CATG 2 cut(s) 86, 174
FaiI YATR 4 cut(s) 84, 172, 236, 309
FaqI GGGAC 1 cut(s) 72
FatI CATG 2 cut(s) 82, 170
FauI CCCGC 1 cut(s) 278
FspBI CTAG 2 cut(s) 32, 328
GlaI GCGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 63
HapII CCGG 2 cut(s) 12, 118
HhaI GCGC 1 cut(s) 117
Hin1II CATG 2 cut(s) 86, 174
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HpaII CCGG 2 cut(s) 12, 118
Hpy188I TCNGA 1 cut(s) 158
HpyAV CCTTC 3 cut(s) 177, 193, 211
HpyCH4III ACNGT 2 cut(s) 105, 215
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 2 cut(s) 211, 263
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 2 cut(s) 86, 174
HspAI GCGC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 25, 131, 213, 285, 293
LweI GCATC 1 cut(s) 37
MaeI CTAG 2 cut(s) 32, 328
MaeII ACGT 1 cut(s) 305
MbiI CCGCTC 1 cut(s) 285
MboII GAAGA 2 cut(s) 136, 241
MfeI CAATTG 1 cut(s) 206
MluCI AATT 2 cut(s) 206, 273
MnlI CCTC 2 cut(s) 33, 50
MseI TTAA 2 cut(s) 132, 276
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 2 cut(s) 12, 118
MspR9I CCNGG 1 cut(s) 13
MunI CAATTG 1 cut(s) 206
NciI CCSGG 1 cut(s) 13
NlaIII CATG 2 cut(s) 86, 174
NlaIV GGNNCC 4 cut(s) 88, 160, 181, 290
Ppu21I YACGTR 1 cut(s) 306
PpuMI RGGWCCY 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 180
PspN4I GGNNCC 4 cut(s) 88, 160, 181, 290
PspPI GGNCC 3 cut(s) 61, 86, 180
PspPPI RGGWCCY 1 cut(s) 180
RsaI GTAC 2 cut(s) 304, 312
RsaNI GTAC 2 cut(s) 303, 311
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 2 cut(s) 132, 276
Sau96I GGNCC 3 cut(s) 61, 86, 180
ScrFI CCNGG 1 cut(s) 13
SetI ASST 5 cut(s) 42, 282, 304, 308, 329
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 2 cut(s) 86, 180
SmiMI CAYNNNNRTG 1 cut(s) 216
SnaBI TACGTA 1 cut(s) 306
Sse9I AATT 2 cut(s) 206, 273
SsiI CCGC 2 cut(s) 26, 285
SspMI CTAG 2 cut(s) 32, 328
StyD4I CCNGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 105, 215
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 267
TasI AATT 2 cut(s) 206, 273
Tru1I TTAA 2 cut(s) 132, 276
Tru9I TTAA 2 cut(s) 132, 276
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 4 cut(s) 71, 142, 159, 223
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 2 cut(s) 86, 180
XspI CTAG 2 cut(s) 32, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.