Rh2CG247500

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000229
Physical Location & Seq
Reverse (-)
25972406 .. 25994445
22040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG247500.1

Sequence Viewer

Length: 1044 bp
ATGGAGAGAGTTACTTGGTTCTTCCTGGCATACTTAGTACGACAGCTAGCTGCTTTAACTATGGCAGCACAAACCAACCTTAACATTACCACAGACCGGTCTGCTCTTCTTGCTCTCAAATCTCATATCACCAATGACCCTCAAAACATGATCTTCACCAACTGGTCAACCACCACCCCTGTTTGCAACTGGGTTGGAGTCACTTGTGGTGCACGCCATCGTCGAGTAGCAGAGTTGAACCTCTCTTACTTTGGTCTCACAGGCACCATTCCTCCGGAGCTAGGTAACTTATCATTTCTGGTTGATCTGCGCTTCAGAAATAACAGTTTTCGTGGTACCTTGCCTCAAGAGTTGGCTCGCTTGCGCCGTTTGAAGTTTATTAACTTGGCATATAACAAGTTTACAGGAGTCATTCCGTCATGGTTTGGGTCGTTGTCCAAACTTCAAATATTCAGTTTTTATGAAATTCCAAATGAGATCGGCACCTTGAATCATCTAGAAAAGTTGTTTGTGCAAGAAAATGCCTTAAAAGGGCCTATTCCAATGGGTGTCTTGAATATGTCATCTTTGACTACTGTAATTTTCTATGGAAACAACTTGAATGGTAGAATTCCTAACAATATATGTCAACATCTTCCAAATATTCAAGAGTTGAATTTGGGTATGAATCAGTTTGATGGTCCACTTCCATCCAAGTTATGGCAATGCAAACAACTACTTAGTTTGAAGTTGACAGTCAACATGTTTAGTGGAAGCATACCCAAAGATATTGGGAACTTAACTTCGATAAAGACGATTAGGCTTGGCACCAACAGCTTGACAGAATGTCAGATGGGTGGGGAGTTGGACAATATGGGAATTAAATGTTTCAGAAATGCTAAAGAACCAGTGGGTAGCGACAAGGAGCGAGGTGGTGAGTGGCAAGAGGCTGCGATTGGGTGTATGGAGGGCTGCAGGAGATCGAGTCTGGCTCTGAGGCCGAATCTGGGATCCAAGTCGGCATGGGCTATTATGGAGTCAAGATGCGGCGGCGTTGCTGAGTAA

Protein Analysis

347

Amino Acids

38.65

Weight (kDa)

9.27

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 69 1.2e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 80 - 153 3.2e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 4 cut(s) 263, 335, 482, 806
AccB7I CCANNNNNTGG 1 cut(s) 699
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 2 cut(s) 1026, 1029
AclWI GGATC 2 cut(s) 984, 997
AcsI RAATTY 3 cut(s) 465, 609, 655
AcuI CTGAAG 1 cut(s) 298
AfaI GTAC 2 cut(s) 39, 337
AfiI CCNNNNNNNGG 5 cut(s) 96, 281, 531, 699, 986
AflIII ACRYGT 1 cut(s) 741
AgeI ACCGGT 1 cut(s) 96
AgsI TTSAA 9 cut(s) 238, 373, 446, 490, 556, 601, 647, 655, 727
AhdI GACNNNNNGTC 1 cut(s) 825
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 4 cut(s) 46, 50, 280, 816
AluI AGCT 4 cut(s) 46, 50, 280, 816
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 260
Alw44I GTGCAC 1 cut(s) 210
AlwI GGATC 2 cut(s) 984, 997
Aor13HI TCCGGA 1 cut(s) 274
AoxI GGCC 2 cut(s) 533, 977
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 4 cut(s) 50, 65, 929, 951
ApoI RAATTY 3 cut(s) 465, 609, 655
AsiGI ACCGGT 1 cut(s) 96
Asp718I GGTACC 1 cut(s) 335
AspLEI GCGC 2 cut(s) 312, 366
AspS9I GGNCC 2 cut(s) 533, 680
AsuHPI GGTGA 3 cut(s) 121, 148, 926
AsuNHI GCTAGC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 214
BamHI GGATCC 1 cut(s) 989
BanI GGYRCC 4 cut(s) 263, 335, 482, 806
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 4 cut(s) 37, 77, 916, 938
BccI CCATC 4 cut(s) 225, 671, 697, 826
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 3 cut(s) 47, 281, 497
BfmI CTRYAG 1 cut(s) 952
BisI GCNGC 6 cut(s) 51, 66, 930, 952, 1027, 1030
BlsI GCNGC 6 cut(s) 52, 67, 931, 953, 1028, 1031
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 680
BmeRI GACNNNNNGTC 1 cut(s) 825
BmgT120I GGNCC 2 cut(s) 533, 680
BmiI GGNNCC 5 cut(s) 265, 337, 484, 808, 991
BmrFI CCNGG 1 cut(s) 26
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 1013
BmtI GCTAGC 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 199
BplI GAGNNNNNCTC 2 cut(s) 955, 987
BpuEI CTTGAG 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 260
BsaWI WCCGGW 2 cut(s) 96, 274
BsaXI ACNNNNNCTCC 4 cut(s) 256, 286, 949, 979
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 281, 531, 699, 986
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 3 cut(s) 167, 194, 887
Bse3DI GCAATG 1 cut(s) 710
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 689
BseLI CCNNNNNNNGG 5 cut(s) 96, 281, 531, 699, 986
BseMI GCAATG 1 cut(s) 710
BseMII CTCAG 2 cut(s) 965, 1029
BseNI ACTGG 3 cut(s) 167, 194, 887
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 4 cut(s) 37, 77, 916, 938
BshFI GGCC 2 cut(s) 535, 979
BshNI GGYRCC 4 cut(s) 263, 335, 482, 806
BshTI ACCGGT 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 2 cut(s) 97, 275
BslI CCNNNNNNNGG 5 cut(s) 96, 281, 531, 699, 986
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 2 cut(s) 535, 979
Bso31I GGTCTC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 214
Bsp13I TCCGGA 1 cut(s) 274
Bsp143I GATC 5 cut(s) 150, 304, 477, 959, 989
BspACI CCGC 2 cut(s) 1026, 1029
BspANI GGCC 2 cut(s) 535, 979
BspCNI CTCAG 2 cut(s) 966, 1030
BspEI TCCGGA 1 cut(s) 274
BspLI GGNNCC 5 cut(s) 265, 337, 484, 808, 991
BspMAI CTGCAG 1 cut(s) 956
BspOI GCTAGC 1 cut(s) 50
BspPI GGATC 2 cut(s) 984, 997
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 4 cut(s) 263, 335, 482, 806
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 710
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 3 cut(s) 167, 194, 887
BssAI RCCGGY 1 cut(s) 96
BssMI GATC 5 cut(s) 150, 304, 477, 959, 989
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 3 cut(s) 326, 577, 736
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 4 cut(s) 48, 214, 358, 362
BstDEI CTNAG 4 cut(s) 34, 719, 974, 1038
BstF5I GGATG 1 cut(s) 689
BstHHI GCGC 2 cut(s) 312, 366
BstKTI GATC 5 cut(s) 153, 307, 480, 962, 992
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 5 cut(s) 150, 304, 477, 959, 989
BstMWI GCNNNNNNNGC 2 cut(s) 110, 813
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 745
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 952
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 4 cut(s) 37, 77, 916, 938
BstX2I RGATCY 1 cut(s) 989
BstYI RGATCY 1 cut(s) 989
BsuRI GGCC 2 cut(s) 535, 979
BtsCI GGATG 1 cut(s) 689
BtsIMutI CAGTG 1 cut(s) 894
Cac8I GCNNGC 4 cut(s) 48, 214, 358, 362
CfoI GCGC 2 cut(s) 312, 366
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 2 cut(s) 533, 680
Csp6I GTAC 2 cut(s) 38, 336
CspAI ACCGGT 1 cut(s) 96
CviAII CATG 4 cut(s) 148, 420, 742, 1002
CviQI GTAC 2 cut(s) 38, 336
DdeI CTNAG 4 cut(s) 34, 719, 974, 1038
DpnI GATC 5 cut(s) 152, 306, 479, 961, 991
DpnII GATC 5 cut(s) 150, 304, 477, 959, 989
DriI GACNNNNNGTC 1 cut(s) 825
Eam1104I CTCTTC 1 cut(s) 111
Eam1105I GACNNNNNGTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 533
EcoRI GAATTC 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 4 cut(s) 151, 423, 745, 1005
FatI CATG 4 cut(s) 147, 419, 741, 1001
Fnu4HI GCNGC 6 cut(s) 51, 66, 930, 952, 1027, 1030
FokI GGATG 1 cut(s) 676
Fsp4HI GCNGC 6 cut(s) 51, 66, 930, 952, 1027, 1030
FspBI CTAG 3 cut(s) 47, 281, 497
GlaI GCGC 2 cut(s) 311, 365
GluI GCNGC 6 cut(s) 51, 66, 930, 952, 1027, 1030
HaeIII GGCC 2 cut(s) 535, 979
HapII CCGG 2 cut(s) 97, 275
HhaI GCGC 2 cut(s) 312, 366
Hin1II CATG 4 cut(s) 151, 423, 745, 1005
Hin6I GCGC 2 cut(s) 310, 364
HinP1I GCGC 2 cut(s) 310, 364
HincII GTYRAC 4 cut(s) 168, 629, 732, 739
HindII GTYRAC 4 cut(s) 168, 629, 732, 739
HinfI GANTC 7 cut(s) 198, 408, 490, 667, 964, 982, 1016
HpaII CCGG 2 cut(s) 97, 275
HphI GGTGA 3 cut(s) 121, 148, 926
Hpy166II GTNNAC 7 cut(s) 168, 212, 402, 629, 683, 732, 739
Hpy188I TCNGA 4 cut(s) 317, 831, 872, 975
Hpy188III TCNNGA 6 cut(s) 275, 347, 497, 553, 647, 1020
Hpy8I GTNNAC 7 cut(s) 168, 212, 402, 629, 683, 732, 739
Hpy99I CGWCG 1 cut(s) 225
HpyCH4III ACNGT 3 cut(s) 326, 577, 736
HpyCH4V TGCA 5 cut(s) 186, 212, 514, 708, 954
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 813
HpyF3I CTNAG 4 cut(s) 34, 719, 974, 1038
Hsp92II CATG 4 cut(s) 151, 423, 745, 1005
HspAI GCGC 2 cut(s) 310, 364
Kpn2I TCCGGA 1 cut(s) 274
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 5 cut(s) 150, 304, 477, 959, 989
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 277, 904
Lsp1109I GCAGC 4 cut(s) 37, 77, 916, 938
LweI GCATC 1 cut(s) 1013
MaeI CTAG 3 cut(s) 47, 281, 497
MaeIII GTNAC 3 cut(s) 10, 199, 284
MalI GATC 5 cut(s) 152, 306, 479, 961, 991
MboI GATC 5 cut(s) 150, 304, 477, 959, 989
MboII GAAGA 4 cut(s) 13, 98, 145, 626
MflI RGATCY 1 cut(s) 989
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 5 cut(s) 465, 579, 609, 655, 858
MlyI GAGTC 4 cut(s) 207, 417, 973, 1025
MmeI TCCRAC 2 cut(s) 175, 825
MnlI CCTC 8 cut(s) 150, 251, 282, 354, 902, 919, 940, 969
MroI TCCGGA 1 cut(s) 274
MseI TTAA 6 cut(s) 56, 81, 381, 527, 779, 861
MspI CCGG 2 cut(s) 97, 275
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 110, 813
NdeII GATC 5 cut(s) 150, 304, 477, 959, 989
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 4 cut(s) 151, 423, 745, 1005
NlaIV GGNNCC 5 cut(s) 265, 337, 484, 808, 991
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 745
PciI ACATGT 1 cut(s) 741
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 3 cut(s) 220, 364, 791
PfeI GAWTC 3 cut(s) 490, 667, 982
PflMI CCANNNNNTGG 1 cut(s) 699
PinAI ACCGGT 1 cut(s) 96
PkrI GCNGC 6 cut(s) 52, 67, 931, 953, 1028, 1031
PleI GAGTC 4 cut(s) 206, 416, 972, 1024
PpsI GAGTC 4 cut(s) 206, 416, 972, 1024
PscI ACATGT 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 5 cut(s) 265, 337, 484, 808, 991
PspPI GGNCC 2 cut(s) 533, 680
PsrI GAACNNNNNNTAC 2 cut(s) 230, 262
PstI CTGCAG 1 cut(s) 956
PsuI RGATCY 1 cut(s) 989
RsaI GTAC 2 cut(s) 39, 337
RsaNI GTAC 2 cut(s) 38, 336
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 6 cut(s) 56, 81, 381, 527, 779, 861
SatI GCNGC 6 cut(s) 51, 66, 930, 952, 1027, 1030
Sau3AI GATC 5 cut(s) 150, 304, 477, 959, 989
Sau96I GGNCC 2 cut(s) 533, 680
SchI GAGTC 4 cut(s) 207, 417, 973, 1025
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 1 cut(s) 1013
SfcI CTRYAG 1 cut(s) 952
SinI GGWCC 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 5 cut(s) 465, 579, 609, 655, 858
SsiI CCGC 2 cut(s) 1026, 1029
SspI AATATT 2 cut(s) 450, 643
SspMI CTAG 3 cut(s) 47, 281, 497
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 3 cut(s) 326, 577, 736
TaqI TCGA 3 cut(s) 223, 785, 962
TasI AATT 5 cut(s) 465, 579, 609, 655, 858
TauI GCSGC 2 cut(s) 1029, 1032
TfiI GAWTC 3 cut(s) 490, 667, 982
Tru1I TTAA 6 cut(s) 56, 81, 381, 527, 779, 861
Tru9I TTAA 6 cut(s) 56, 81, 381, 527, 779, 861
TscAI CASTG 1 cut(s) 894
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 4 cut(s) 50, 65, 929, 951
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 477, 680
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 1 cut(s) 894
Van91I CCANNNNNTGG 1 cut(s) 699
VneI GTGCAC 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 3 cut(s) 465, 609, 655
XbaI TCTAGA 1 cut(s) 496
XceI RCATGY 1 cut(s) 745
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XspI CTAG 3 cut(s) 47, 281, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.