RchiOBHm_Chr5g0011311

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
7492367 .. 7492930
564 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29200

Sequence Viewer

Length: 564 bp
ATGGAGAGAATTACTTGGTTCTTCATGATCGTATACTACTACTGTTGCATGGCTAGCTTAACCATGGCAGCACAAACCAACATCAGCACAGACCAGTCTGCTCTTCTTGCTCTCAAATCCTGTATCACCCATGACCCTCAAAACAAAATCTTGTCCAATTGGTCAACCACCACTCAAGTCTGCAACTGGGCTGGCGTCACTTGTGGTGCAGGCCATCATCGAGTCACAGACTTGAATATCTCTAACTTTGGTCTTGTAGGCACCATTGCTCCCGAACTAGGCAACCTATCATTCCTTGTTAATATGGACTTCACAAATAACAACTTCCACGGTTCCTTGCCCCAGGAATTGAGTCGTTTGCGCCAATTGAAGTTCATTTGTTTCAGATTAAACAGGTTGATGGGTATTATTCCATCATGGCTTGGGTCTTTATCCAAACTTCAAACAATCAATTTGCGTGGTAATAAATTTTCAGGTTCCATACCCACTGCCATGTGCAACTTATCTGTGCTCCAAGTAATTAATTTGGGATATAACCAGCTATCAGGTACGTTACGGACATAA

Protein Analysis

187

Amino Acids

20.82

Weight (kDa)

9.12

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 68 8.8e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 87 - 178 2.5e-07 Leucine-rich repeat region
LRR_8 PF13855 131 - 181 2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 467
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 3 cut(s) 235, 370, 443
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 2 cut(s) 57, 541
AluI AGCT 2 cut(s) 57, 541
Alw21I GWGCWC 1 cut(s) 513
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 467
AseI ATTAAT 1 cut(s) 522
AspLEI GCGC 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 118
AsuNHI GCTAGC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 80
BccI CCATC 3 cut(s) 222, 394, 421
BciT130I CCWGG 1 cut(s) 344
BfaI CTAG 2 cut(s) 54, 278
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 344
BmiI GGNNCC 3 cut(s) 262, 334, 478
BmrFI CCNGG 1 cut(s) 344
BmrI ACTGGG 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 63, 328, 342
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 94, 191
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 3 cut(s) 63, 328, 342
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 94, 191
BseXI GCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 513
BslI CCNNNNNNNGG 1 cut(s) 278
BsnI GGCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 1 cut(s) 27
Bsp19I CCATGG 1 cut(s) 63
BspANI GGCC 1 cut(s) 213
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 262, 334, 478
BspOI GCTAGC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 108
BspT107I GGYRCC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 2 cut(s) 94, 191
BssECI CCNNGG 3 cut(s) 63, 328, 342
BssMI GATC 1 cut(s) 27
BssNAI GTATAC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 63
Bst1107I GTATAC 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 2 cut(s) 44, 332
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 55, 193, 211
BstDSI CCRYGG 2 cut(s) 63, 328
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 54, 107
BstNI CCWGG 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 80
BstZ17I GTATAC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 2 cut(s) 63, 328
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 3 cut(s) 55, 193, 211
CciI TCATGA 1 cut(s) 24
CfoI GCGC 1 cut(s) 363
CseI GACGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 549
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 6 cut(s) 25, 49, 64, 131, 417, 493
CviJI RGCY 6 cut(s) 53, 57, 191, 213, 421, 541
CviKI_1 RGCY 6 cut(s) 53, 57, 191, 213, 421, 541
CviQI GTAC 1 cut(s) 549
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 6 cut(s) 28, 52, 67, 134, 420, 496
FatI CATG 6 cut(s) 24, 48, 63, 130, 416, 492
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 54, 278
GlaI GCGC 1 cut(s) 362
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 213
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 6 cut(s) 28, 52, 67, 134, 420, 496
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 2 cut(s) 222, 352
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 34, 165
Hpy188I TCNGA 1 cut(s) 386
Hpy188III TCNNGA 2 cut(s) 25, 272
Hpy8I GTNNAC 2 cut(s) 34, 165
HpyCH4III ACNGT 2 cut(s) 44, 332
HpyCH4IV ACGT 1 cut(s) 551
HpyCH4V TGCA 4 cut(s) 48, 183, 209, 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 107
HpySE526I ACGT 1 cut(s) 551
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 6 cut(s) 28, 52, 67, 134, 420, 496
HspAI GCGC 1 cut(s) 361
Kzo9I GATC 1 cut(s) 27
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 2 cut(s) 274, 516
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 2 cut(s) 54, 278
MaeII ACGT 1 cut(s) 551
MaeIII GTNAC 3 cut(s) 196, 223, 552
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 2 cut(s) 13, 95
MfeI CAATTG 2 cut(s) 157, 365
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 8 cut(s) 9, 157, 347, 365, 451, 467, 519, 523
MlyI GAGTC 2 cut(s) 231, 361
MnlI CCTC 1 cut(s) 147
MseI TTAA 4 cut(s) 59, 300, 389, 522
MslI CAYNNNNRTG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 344
MunI CAATTG 2 cut(s) 157, 365
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 54, 107
NcoI CCATGG 1 cut(s) 63
NdeII GATC 1 cut(s) 27
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 6 cut(s) 28, 52, 67, 134, 420, 496
NlaIV GGNNCC 3 cut(s) 262, 334, 478
NmuCI GTSAC 2 cut(s) 196, 223
PagI TCATGA 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 108
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 2 cut(s) 230, 360
PpsI GAGTC 2 cut(s) 230, 360
PshBI ATTAAT 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 3 cut(s) 262, 334, 478
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 491
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 59, 300, 389, 522
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 27
SchI GAGTC 2 cut(s) 231, 361
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 1 cut(s) 513
SetI ASST 7 cut(s) 59, 288, 398, 478, 543, 550, 554
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 8 cut(s) 9, 157, 347, 365, 451, 467, 519, 523
SspMI CTAG 2 cut(s) 54, 278
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 44, 332
TaiI ACGT 1 cut(s) 554
TaqI TCGA 1 cut(s) 220
TasI AATT 8 cut(s) 9, 157, 347, 365, 451, 467, 519, 523
Tru1I TTAA 4 cut(s) 59, 300, 389, 522
Tru9I TTAA 4 cut(s) 59, 300, 389, 522
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 2 cut(s) 196, 223
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 2 cut(s) 196, 223
TspDTI ATGAA 2 cut(s) 13, 364
TspRI CASTG 1 cut(s) 493
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 2 cut(s) 54, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.