RchiOBHm_Chr5g0010981

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
7265390 .. 7265770
381 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29169

Sequence Viewer

Length: 381 bp
ATGGCGGCTACCTGCTTAACTATGGCAGCACCACAGACCAATATCACCATATATCAATATGCTCTTCTTGCTCTCAAAGCCCGTATCACTAGTGATCCTCGTAACTTGATCTTCACCAATTGGTCAACCACCACTCCTATTTGCAATTGGGTTGGCGTTACTTGTGGTGCACGCCACCTTAGAGCCGCAACCTTGAACCTCTCATACTTTGGTCTCGCATGCACCATTCCTCCGAAGTTAGGCAACCTATCATTTCTTGTGGATCTGGACATCACAAATAACAACTTTCACCGTTTCTTACCCCAAGAATTGGCTTGCCTGCGCCGGTTGAAACTTATTAGCTTGGGATACAACAAGTTTACAGGAATGTTTCCAGCATGA

Protein Analysis

126

Amino Acids

14.01

Weight (kDa)

9.55

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 21 - 55 1.2e-09 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 20
AccB7I CCANNNNNTGG 1 cut(s) 310
AciI CCGC 2 cut(s) 5, 186
AclWI GGATC 2 cut(s) 89, 270
AfiI CCNNNNNNNGG 2 cut(s) 239, 310
AgsI TTSAA 2 cut(s) 196, 331
AhlI ACTAGT 1 cut(s) 89
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 218
Alw44I GTGCAC 1 cut(s) 168
AlwI GGATC 2 cut(s) 89, 270
ApaLI GTGCAC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 324
AsuHPI GGTGA 3 cut(s) 37, 106, 281
BaeGI GKGCMC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 38
BciVI GTATCC 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 218
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 20
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 3 cut(s) 6, 27, 186
BlsI GCNGC 3 cut(s) 7, 28, 187
BsaI GGTCTC 1 cut(s) 218
BsaXI ACNNNNNCTCC 4 cut(s) 118, 148, 214, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 310
Bse118I RCCGGY 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 239, 310
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 325
BslI CCNNNNNNNGG 2 cut(s) 239, 310
BsmAI GTCTC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 3 cut(s) 94, 108, 262
BspACI CCGC 2 cut(s) 5, 186
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 2 cut(s) 89, 270
BspQI GCTCTTC 1 cut(s) 69
BspTNI GGTCTC 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 324
BssMI GATC 3 cut(s) 94, 108, 262
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 4 cut(s) 172, 220, 316, 320
BstDEI CTNAG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 3 cut(s) 97, 111, 265
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 94, 108, 262
BstMWI GCNNNNNNNGC 2 cut(s) 68, 77
BstNSI RCATGY 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuI GTATCC 1 cut(s) 341
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 4 cut(s) 172, 220, 316, 320
CfoI GCGC 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 324
CviAII CATG 2 cut(s) 219, 378
CviJI RGCY 5 cut(s) 8, 80, 185, 314, 342
CviKI_1 RGCY 5 cut(s) 8, 80, 185, 314, 342
DdeI CTNAG 1 cut(s) 179
DpnI GATC 3 cut(s) 96, 110, 264
DpnII GATC 3 cut(s) 94, 108, 262
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 218
FaeI CATG 2 cut(s) 222, 381
FaiI YATR 7 cut(s) 23, 50, 52, 60, 205, 220, 379
FatI CATG 2 cut(s) 218, 377
Fnu4HI GCNGC 3 cut(s) 6, 27, 186
Fsp4HI GCNGC 3 cut(s) 6, 27, 186
FspBI CTAG 1 cut(s) 90
GlaI GCGC 1 cut(s) 323
GluI GCNGC 3 cut(s) 6, 27, 186
HapII CCGG 1 cut(s) 325
HhaI GCGC 1 cut(s) 324
Hin1II CATG 2 cut(s) 222, 381
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HpaII CCGG 1 cut(s) 325
HphI GGTGA 3 cut(s) 37, 106, 281
Hpy166II GTNNAC 3 cut(s) 126, 170, 360
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 3 cut(s) 126, 170, 360
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 3 cut(s) 144, 170, 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 77
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 2 cut(s) 222, 381
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 3 cut(s) 94, 108, 262
LguI GCTCTTC 1 cut(s) 69
LpnPI CCDG 5 cut(s) 25, 251, 332, 338, 348
Lsp1109I GCAGC 1 cut(s) 38
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 101, 157
MalI GATC 3 cut(s) 96, 110, 264
MboI GATC 3 cut(s) 94, 108, 262
MboII GAAGA 2 cut(s) 56, 103
MfeI CAATTG 2 cut(s) 118, 145
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 3 cut(s) 118, 145, 308
MnlI CCTC 3 cut(s) 108, 209, 240
MseI TTAA 1 cut(s) 17
MspI CCGG 1 cut(s) 325
MunI CAATTG 2 cut(s) 118, 145
MwoI GCNNNNNNNGC 2 cut(s) 68, 77
NdeII GATC 3 cut(s) 94, 108, 262
NlaIII CATG 2 cut(s) 222, 381
NspI RCATGY 1 cut(s) 222
PaeI GCATGC 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 69
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 3 cut(s) 7, 28, 187
PsrI GAACNNNNNNTAC 2 cut(s) 188, 220
PsuI RGATCY 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 3 cut(s) 6, 27, 186
Sau3AI GATC 3 cut(s) 94, 108, 262
SduI GDGCHC 1 cut(s) 172
SetI ASST 6 cut(s) 14, 180, 194, 201, 249, 344
SpeI ACTAGT 1 cut(s) 89
SphI GCATGC 1 cut(s) 222
Sse9I AATT 3 cut(s) 118, 145, 308
SsiI CCGC 2 cut(s) 5, 186
SspMI CTAG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 293
TasI AATT 3 cut(s) 118, 145, 308
TauI GCSGC 2 cut(s) 8, 188
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TseI GCWGC 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 310
VneI GTGCAC 1 cut(s) 168
XceI RCATGY 1 cut(s) 222
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.