Rh2CG250000

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
26466918 .. 26467931
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG250000.1

Sequence Viewer

Length: 561 bp
ATGGAGAGAGCTACTTGGTTCTTCCTGATATACTTGATCTGTTGCGACGCGGCTAGCTGCTTAACTATGGTAGCACAAACCAACCTTAACATCACCACAGACCGGTCTGTTCTTCTTGCTCTCAAAGCCCATATCACCAATGACCCTCGAAACATAGTCTTCACCAACTGGTTAACCACAACCCCTGTTTGTAACTGGGTTGGAGTCACTTGTGGTGCACGCCATCATCGAATCGCAAAGTTGAACGTATCTCACTTTGGTCTCACAGGCACCATTCCTCCGGAGCTAGGCAACTTATCTTTTCTTGTTGTTCTGGACTTCAAAAATAATAGTTTTCACGGTATCTTGCCTCAAGAATTGGCTTGCCTACGTCGGTTGAAGTTTATAAGATTGGGAAACAACAAGTTCATGGGAGACATTCCATCATGGTTTGGCTCCTTATTCAAACTTCAAGCATTCGGTTTGTGTGGTAATCAATTTTCAGGTTCCATACCAGCTACAATCTTCAACTTATCTGCTCTGCAAATAATTAGTCTGTGTTCTAACCAACTCTCAGCTTGA

Protein Analysis

186

Amino Acids

20.61

Weight (kDa)

9.06

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 71 1.8e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 91 - 177 9.9e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 269
AccII CGCG 1 cut(s) 50
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 102, 287
AgeI ACCGGT 1 cut(s) 102
AgsI TTSAA 6 cut(s) 244, 322, 379, 445, 452, 508
AluBI AGCT 5 cut(s) 11, 57, 286, 497, 557
AluI AGCT 5 cut(s) 11, 57, 286, 497, 557
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 2 cut(s) 266, 408
Alw44I GTGCAC 1 cut(s) 216
Aor13HI TCCGGA 1 cut(s) 280
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 57
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AsiGI ACCGGT 1 cut(s) 102
AsuHPI GGTGA 3 cut(s) 85, 127, 154
AsuNHI GCTAGC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 44
BccI CCATC 2 cut(s) 231, 430
BcoDI GTCTC 2 cut(s) 266, 408
BfaI CTAG 2 cut(s) 54, 287
BisI GCNGC 2 cut(s) 51, 58
BlsI GCNGC 2 cut(s) 52, 59
BmiI GGNNCC 3 cut(s) 271, 436, 487
BmrI ACTGGG 1 cut(s) 205
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 266
BsaWI WCCGGW 2 cut(s) 102, 280
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 287
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 173, 200
BseAI TCCGGA 1 cut(s) 280
BseLI CCNNNNNNNGG 2 cut(s) 102, 287
BseNI ACTGG 2 cut(s) 173, 200
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 269
BshTI ACCGGT 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 2 cut(s) 103, 281
BslI CCNNNNNNNGG 2 cut(s) 102, 287
BsmAI GTCTC 2 cut(s) 266, 408
BsmI GAATGC 1 cut(s) 455
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 220
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 1 cut(s) 50
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 3 cut(s) 271, 436, 487
BspOI GCTAGC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 2 cut(s) 173, 200
BssAI RCCGGY 1 cut(s) 102
BssMI GATC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 341
BstC8I GCNNGC 3 cut(s) 55, 220, 364
BstDEI CTNAG 1 cut(s) 553
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 2 cut(s) 266, 408
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 151
Cac8I GCNNGC 3 cut(s) 55, 220, 364
Cfr10I RCCGGY 1 cut(s) 102
CseI GACGC 1 cut(s) 56
CspAI ACCGGT 1 cut(s) 102
CviAII CATG 2 cut(s) 409, 426
CviJI RGCY 9 cut(s) 11, 53, 57, 128, 286, 362, 435, 497, 557
CviKI_1 RGCY 9 cut(s) 11, 53, 57, 128, 286, 362, 435, 497, 557
DdeI CTNAG 1 cut(s) 553
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 266
FaeI CATG 2 cut(s) 412, 429
FaiI YATR 8 cut(s) 31, 68, 132, 155, 386, 410, 427, 491
FatI CATG 2 cut(s) 408, 425
Fnu4HI GCNGC 2 cut(s) 51, 58
Fsp4HI GCNGC 2 cut(s) 51, 58
FspBI CTAG 2 cut(s) 54, 287
GluI GCNGC 2 cut(s) 51, 58
HapII CCGG 2 cut(s) 103, 281
HgaI GACGC 1 cut(s) 56
Hin1II CATG 2 cut(s) 412, 429
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 2 cut(s) 204, 231
HpaI GTTAAC 1 cut(s) 174
HpaII CCGG 2 cut(s) 103, 281
HphI GGTGA 3 cut(s) 85, 127, 154
Hpy166II GTNNAC 2 cut(s) 174, 218
Hpy188III TCNNGA 4 cut(s) 25, 281, 314, 353
Hpy8I GTNNAC 2 cut(s) 174, 218
Hpy99I CGWCG 2 cut(s) 50, 375
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 2 cut(s) 246, 370
HpyCH4V TGCA 2 cut(s) 218, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 553
HpySE526I ACGT 2 cut(s) 246, 370
Hsp92II CATG 2 cut(s) 412, 429
Kpn2I TCCGGA 1 cut(s) 280
KspAI GTTAAC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 2 cut(s) 283, 440
Lsp1109I GCAGC 1 cut(s) 44
MaeI CTAG 2 cut(s) 54, 287
MaeII ACGT 2 cut(s) 246, 370
MaeIII GTNAC 2 cut(s) 191, 205
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 4 cut(s) 13, 104, 151, 496
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 3 cut(s) 356, 476, 528
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 3 cut(s) 156, 288, 360
MroI TCCGGA 1 cut(s) 280
MseI TTAA 3 cut(s) 62, 87, 173
MspI CCGG 2 cut(s) 103, 281
Mva1269I GAATGC 1 cut(s) 455
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 36
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 412, 429
NlaIV GGNNCC 3 cut(s) 271, 436, 487
NmuCI GTSAC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PctI GAATGC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 231
PinAI ACCGGT 1 cut(s) 102
PkrI GCNGC 2 cut(s) 52, 59
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 386
PspN4I GGNNCC 3 cut(s) 271, 436, 487
SaqAI TTAA 3 cut(s) 62, 87, 173
SatI GCNGC 2 cut(s) 51, 58
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 220
SetI ASST 9 cut(s) 13, 59, 87, 249, 288, 373, 487, 499, 559
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 3 cut(s) 356, 476, 528
SsiI CCGC 1 cut(s) 50
SspMI CTAG 2 cut(s) 54, 287
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 2 cut(s) 249, 373
TaqI TCGA 2 cut(s) 148, 229
TasI AATT 3 cut(s) 356, 476, 528
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 3 cut(s) 62, 87, 173
Tru9I TTAA 3 cut(s) 62, 87, 173
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 397
VneI GTGCAC 1 cut(s) 216
XspI CTAG 2 cut(s) 54, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.