Rmu_co7972198.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7972198.1
OG0000229
Physical Location & Seq
Reverse (-)
1 .. 456
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7972198.1_g000001.1.cds

Sequence Viewer

Length: 447 bp
atggagagaagtgctcggttcttcctggtggtatactactactgttgcatggctagcttaaccacgacagcacaaaccaaaatcagcacagaccaatctgctcttcttgctctcaaatctcgtatcaccgatgaccctaaaaacaagatcttgaccaactggtcaaccaccactcaagtctgcaactgggctggcgtcacttgtggtgcaggccatcatcgagtcacagacttgaatatatctaactttggtcttgcaggcactattgctcccgaactaggcaacctgtcattccttgttaatatggacttcagaaataacagcttccacggttctttgcctcaggaattgagtcgtttgcgccaattgaagttcatttgtttcagattcaacaagttgatgggtattattccatcatggcttgggtctttacccaaacttcaaacg

Protein Analysis

149

Amino Acids

16.7

Weight (kDa)

9.46

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 295
AcyI GRCGYC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 4 cut(s) 235, 370, 391, 443
AjnI CCWGG 1 cut(s) 24
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 2 cut(s) 57, 324
AluI AGCT 2 cut(s) 57, 324
Alw21I GWGCWC 1 cut(s) 16
AoxI GGCC 1 cut(s) 211
AspLEI GCGC 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 118
AsuNHI GCTAGC 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 16
BccI CCATC 3 cut(s) 222, 394, 421
BciT130I CCWGG 1 cut(s) 26
BfaI CTAG 2 cut(s) 54, 278
BglII AGATCT 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 26
BmrI ACTGGG 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 196
BplI GAGNNNNNCTC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 164, 191
Bse21I CCTNAGG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 2 cut(s) 164, 191
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 278
BsnI GGCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 147
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 355
BspOI GCTAGC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 108
BsrI ACTGG 2 cut(s) 164, 191
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 1 cut(s) 147
BssNAI GTATAC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 195
Bst1107I GTATAC 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 2 cut(s) 44, 332
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 4 cut(s) 55, 193, 211, 259
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 328
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 54, 107
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 34
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 328
Cac8I GCNNGC 4 cut(s) 55, 193, 211, 259
CfoI GCGC 1 cut(s) 363
CseI GACGC 1 cut(s) 184
CviAII CATG 2 cut(s) 49, 417
CviJI RGCY 6 cut(s) 53, 57, 191, 213, 324, 421
CviKI_1 RGCY 6 cut(s) 53, 57, 191, 213, 324, 421
DdeI CTNAG 1 cut(s) 342
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 295
Eco81I CCTNAGG 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 2 cut(s) 52, 420
FaiI YATR 5 cut(s) 34, 50, 239, 305, 418
FatI CATG 2 cut(s) 48, 416
FblI GTMKAC 1 cut(s) 33
FspBI CTAG 2 cut(s) 54, 278
GlaI GCGC 1 cut(s) 362
HaeIII GGCC 1 cut(s) 213
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 52, 420
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 3 cut(s) 222, 352, 387
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 34, 165
Hpy188I TCNGA 2 cut(s) 314, 386
Hpy188III TCNNGA 3 cut(s) 151, 272, 344
Hpy8I GTNNAC 2 cut(s) 34, 165
HpyCH4III ACNGT 2 cut(s) 44, 332
HpyCH4V TGCA 4 cut(s) 48, 183, 209, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 107
HpyF3I CTNAG 1 cut(s) 342
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 52, 420
HspAI GCGC 1 cut(s) 361
Kzo9I GATC 1 cut(s) 147
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 9 cut(s) 11, 38, 145, 172, 177, 195, 243, 299, 329
MaeI CTAG 2 cut(s) 54, 278
MaeIII GTNAC 2 cut(s) 196, 223
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 13, 95
MfeI CAATTG 1 cut(s) 365
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 347, 365
MlyI GAGTC 2 cut(s) 231, 361
MnlI CCTC 1 cut(s) 351
MseI TTAA 2 cut(s) 59, 300
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 54, 107
NdeII GATC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 52, 420
NmuCI GTSAC 2 cut(s) 196, 223
PciSI GCTCTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 387
PleI GAGTC 2 cut(s) 230, 360
PpsI GAGTC 2 cut(s) 230, 360
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 59, 300
Sau3AI GATC 1 cut(s) 147
SchI GAGTC 2 cut(s) 231, 361
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 16
SetI ASST 3 cut(s) 59, 288, 326
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 2 cut(s) 347, 365
SspMI CTAG 2 cut(s) 54, 278
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 44, 332
TaqI TCGA 1 cut(s) 220
TasI AATT 2 cut(s) 347, 365
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 2 cut(s) 59, 300
Tru9I TTAA 2 cut(s) 59, 300
TseFI GTSAC 2 cut(s) 196, 223
Tsp45I GTSAC 2 cut(s) 196, 223
TspDTI ATGAA 1 cut(s) 364
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 2 cut(s) 54, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.