Rh2CG262700

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
28202408 .. 28209563
7156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG262700.1

Sequence Viewer

Length: 522 bp
ATGGGTTTCATACCAGCTACTATCTTCAACTTATCTGCTCTGCAAATAATTGATCTGAGATATAACCAACTGTTAGGTAGAATACCCAGAGAAATCGGGAATCTAACAATGTTGAAGGAGATCTACCTTGATGATAATAACTTTAAAGAGATTCCAAATGAGATCGGCACCTTGAATCAACTAGAAAAGTTGTCTATGCAAGAAAATGCCTTAAAAGGGCCCTTTCCTATGGGTATCTTCAATATGTCATCTTTGACTATTGTAACTTTCTATGAAAACAACTTGAATGGTAGAATTCCGAACAATATATGTCAACATCTTCCAAATATTCAAGCGTTGAATTTAGGTATCAATCAGTTTGATGGTCCACTTCCATCCAAGTTATGGCAATGCAAACAACTTCTTACTTTGGAGTTGAGGGATAACATGTTTAGTGGAAGCATACCTAAAGAAATTGGGAACTTAACTCGGATAAAGAAGATTAGCCTTGTCACAAACAGCTTGACAGAGTCATTTATCTAA

Protein Analysis

173

Amino Acids

19.61

Weight (kDa)

6.58

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 5 - 48 1e-05 Leucine rich repeat
LRR_14 PF23598 8 - 87 1.1e-09 Leucine-rich repeat region
LRR_8 PF13855 13 - 71 7.9e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 384
AcsI RAATTY 2 cut(s) 294, 340
AfiI CCNNNNNNNGG 2 cut(s) 216, 384
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 7 cut(s) 28, 115, 175, 241, 286, 332, 340
AluBI AGCT 2 cut(s) 17, 501
AluI AGCT 2 cut(s) 17, 501
AoxI GGCC 1 cut(s) 218
ApaI GGGCCC 1 cut(s) 222
ApoI RAATTY 2 cut(s) 294, 340
AspS9I GGNCC 3 cut(s) 218, 219, 365
AvaII GGWCC 1 cut(s) 365
BaeGI GKGCMC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 222
BarI GAAGNNNNNNTAC 2 cut(s) 107, 139
BccI CCATC 2 cut(s) 356, 382
BfaI CTAG 1 cut(s) 182
BglII AGATCT 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 3 cut(s) 218, 219, 365
BmiI GGNNCC 2 cut(s) 169, 220
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 384
Bse3DI GCAATG 1 cut(s) 395
BseGI GGATG 1 cut(s) 374
BseLI CCNNNNNNNGG 2 cut(s) 216, 384
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 222
BshFI GGCC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 216, 384
BsnI GGCC 1 cut(s) 220
Bsp120I GGGCCC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 52, 120, 162
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 169, 220
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 395
BssMI GATC 3 cut(s) 52, 120, 162
Bst4CI ACNGT 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 374
BstKTI GATC 3 cut(s) 55, 123, 165
BstMBI GATC 3 cut(s) 52, 120, 162
BstNSI RCATGY 1 cut(s) 430
BstSLI GKGCMC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 374
Cfr13I GGNCC 3 cut(s) 218, 219, 365
CviAII CATG 1 cut(s) 427
CviJI RGCY 4 cut(s) 17, 220, 486, 501
CviKI_1 RGCY 4 cut(s) 17, 220, 486, 501
DdeI CTNAG 1 cut(s) 56
DpnI GATC 3 cut(s) 54, 122, 164
DpnII GATC 3 cut(s) 52, 120, 162
DraI TTTAAA 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 365
EcoO109I RGGNCCY 2 cut(s) 218, 219
EcoRI GAATTC 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 1 cut(s) 430
FatI CATG 1 cut(s) 426
FokI GGATG 1 cut(s) 361
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 1 cut(s) 182
HaeIII GGCC 1 cut(s) 220
Hin1II CATG 1 cut(s) 430
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HinfI GANTC 4 cut(s) 100, 151, 175, 509
Hpy166II GTNNAC 2 cut(s) 314, 368
Hpy188I TCNGA 3 cut(s) 57, 300, 471
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 2 cut(s) 314, 368
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 43, 199, 393
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 1 cut(s) 430
Kzo9I GATC 3 cut(s) 52, 120, 162
LpnPI CCDG 2 cut(s) 27, 100
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 262, 490
MalI GATC 3 cut(s) 54, 122, 164
MboI GATC 3 cut(s) 52, 120, 162
MboII GAAGA 4 cut(s) 16, 229, 311, 490
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 4 cut(s) 48, 294, 340, 453
MlyI GAGTC 1 cut(s) 518
MnlI CCTC 1 cut(s) 411
MseI TTAA 3 cut(s) 144, 212, 464
NdeII GATC 3 cut(s) 52, 120, 162
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 2 cut(s) 169, 220
NmuCI GTSAC 1 cut(s) 490
NspI RCATGY 1 cut(s) 430
PciI ACATGT 1 cut(s) 426
PfeI GAWTC 3 cut(s) 100, 151, 175
PflFI GACNNNGTC 1 cut(s) 508
PflMI CCANNNNNTGG 1 cut(s) 384
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PscI ACATGT 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 169, 220
PspOMI GGGCCC 1 cut(s) 218
PspPI GGNCC 3 cut(s) 218, 219, 365
PsuI RGATCY 1 cut(s) 120
PsyI GACNNNGTC 1 cut(s) 508
SaqAI TTAA 3 cut(s) 144, 212, 464
Sau3AI GATC 3 cut(s) 52, 120, 162
Sau96I GGNCC 3 cut(s) 218, 219, 365
SchI GAGTC 1 cut(s) 518
SduI GDGCHC 1 cut(s) 222
SetI ASST 7 cut(s) 19, 79, 129, 173, 349, 448, 503
SinI GGWCC 1 cut(s) 365
Sse9I AATT 4 cut(s) 48, 294, 340, 453
SspI AATATT 1 cut(s) 328
SspMI CTAG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 72
TasI AATT 4 cut(s) 48, 294, 340, 453
TfiI GAWTC 3 cut(s) 100, 151, 175
Tru1I TTAA 3 cut(s) 144, 212, 464
Tru9I TTAA 3 cut(s) 144, 212, 464
TseFI GTSAC 1 cut(s) 490
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 1 cut(s) 288
Tth111I GACNNNGTC 1 cut(s) 508
Van91I CCANNNNNTGG 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 2 cut(s) 294, 340
XceI RCATGY 1 cut(s) 430
XcmI CCANNNNNNNNNTGG 1 cut(s) 381
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.