Rw0G001470

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00043
Physical Location & Seq
Reverse (-)
149903 .. 150511
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001470.1

Sequence Viewer

Length: 609 bp
ATGGCAGCACAAACCAATAGTAATCTCACCACAGACGAGTCTGCTTTGCTTGCTCTCAAAGCCCTTATCACCAGTGACCCTCAAAAGATCATGACCAACTGGTCAACGAACACCCCAGTTTGCAACTGGATTGGTGTGACTTGTGGTGCACGCCATCATCGAGTCGCAGACTTGAACATCTCTTACTTTAGTCTCACAGGCATCATTCCTCCGGAGCTAGGCAACCTATCATTTCTGATTCAGCTAAGCTTCGCAAATAACAGTTTTCATGGTTCCTTACCTACAGACTTGGCTCGTTTGCGCCGATTGAAGTTCATAATTAGTTTCAAGTACAACAACTTTAAGGGAATCATTCCATCATGGGTTGAGTCCTTACCCAAACTTCAAAGGTTCAATTTGTATGGCAATCAATTTTCAGGGTTCATACCTGCTACCATCTTCAACTTATCTGCACTGCAAGTAATTGATTTGAGCTATAACCAGTTATCAGGTGCCTACCAACAAACTAGTTATCTGGGACTCGGCCAATTAATTAGTGATAACTGGTTCATTATGTATGTACGGTTTAACGTCCGAGATTGTTCGGTTGTTCCACACAATCATATATAG

Protein Analysis

202

Amino Acids

22.71

Weight (kDa)

9.07

Isoelectric Point (pI)

20.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 11 - 48 1.2e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 111 - 162 7.5e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 491
AccIII TCCGGA 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 523
AfaI GTAC 2 cut(s) 332, 561
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 6 cut(s) 175, 310, 328, 386, 394, 442
AhlI ACTAGT 1 cut(s) 506
AluBI AGCT 4 cut(s) 217, 244, 249, 474
AluI AGCT 4 cut(s) 217, 244, 249, 474
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 1 cut(s) 523
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 5
AseI ATTAAT 1 cut(s) 530
AspLEI GCGC 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 19, 61
BaeGI GKGCMC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 162, 364, 443
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 2 cut(s) 218, 507
BfmI CTRYAG 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 274, 493
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 110
Bpu1102I GCTNAGC 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 6 cut(s) 72, 104, 116, 131, 481, 548
BseAI TCCGGA 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 6 cut(s) 72, 104, 116, 131, 481, 548
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 1 cut(s) 525
BshNI GGYRCC 1 cut(s) 491
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 1 cut(s) 525
Bsp1286I GDGCHC 1 cut(s) 151
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 1 cut(s) 87
Bsp1720I GCTNAGC 1 cut(s) 245
BspANI GGCC 1 cut(s) 525
BspEI TCCGGA 1 cut(s) 211
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 274, 493
BspMI ACCTGC 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 491
BsrI ACTGG 6 cut(s) 72, 104, 116, 131, 481, 548
BssMI GATC 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 263, 564
BstC8I GCNNGC 2 cut(s) 51, 151
BstDEI CTNAG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 525
BtsI GCAGTG 1 cut(s) 452
BtsIMutI CAGTG 2 cut(s) 79, 452
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 2 cut(s) 51, 151
CciI TCATGA 1 cut(s) 90
CfoI GCGC 1 cut(s) 303
Csp6I GTAC 2 cut(s) 331, 560
CviAII CATG 3 cut(s) 91, 269, 360
CviJI RGCY 7 cut(s) 62, 217, 244, 249, 293, 474, 525
CviKI_1 RGCY 7 cut(s) 62, 217, 244, 249, 293, 474, 525
CviQI GTAC 2 cut(s) 331, 560
DdeI CTNAG 1 cut(s) 245
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
DrdI GACNNNNNNGTC 1 cut(s) 100
DseDI GACNNNNNNGTC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 523
FaeI CATG 3 cut(s) 94, 272, 363
FaqI GGGAC 1 cut(s) 531
FatI CATG 3 cut(s) 90, 268, 359
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 218, 507
GlaI GCGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 525
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 303
Hin1II CATG 3 cut(s) 94, 272, 363
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 6 cut(s) 38, 162, 238, 348, 368, 519
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 19, 61
Hpy166II GTNNAC 2 cut(s) 105, 149
Hpy188I TCNGA 2 cut(s) 237, 575
Hpy188III TCNNGA 2 cut(s) 91, 212
Hpy8I GTNNAC 2 cut(s) 105, 149
HpyCH4III ACNGT 2 cut(s) 263, 564
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 4 cut(s) 123, 149, 452, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 3 cut(s) 94, 272, 363
HspAI GCGC 1 cut(s) 301
Kpn2I TCCGGA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 210
MaeI CTAG 2 cut(s) 218, 507
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 2 cut(s) 74, 136
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 6 cut(s) 318, 394, 410, 462, 527, 531
MlyI GAGTC 4 cut(s) 47, 171, 377, 513
MnlI CCTC 2 cut(s) 90, 219
MroI TCCGGA 1 cut(s) 211
MseI TTAA 3 cut(s) 342, 530, 567
MspI CCGG 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NdeII GATC 1 cut(s) 87
NlaIII CATG 3 cut(s) 94, 272, 363
NlaIV GGNNCC 2 cut(s) 274, 493
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 2 cut(s) 74, 136
PagI TCATGA 1 cut(s) 90
PcsI WCGNNNNNNNCGW 2 cut(s) 157, 301
PfeI GAWTC 2 cut(s) 238, 348
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 4 cut(s) 46, 170, 376, 513
PpsI GAGTC 4 cut(s) 46, 170, 376, 513
PshBI ATTAAT 1 cut(s) 530
PspN4I GGNNCC 2 cut(s) 274, 493
PsrI GAACNNNNNNTAC 2 cut(s) 167, 199
RsaI GTAC 2 cut(s) 332, 561
RsaNI GTAC 2 cut(s) 331, 560
SaqAI TTAA 3 cut(s) 342, 530, 567
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 87
SchI GAGTC 4 cut(s) 47, 171, 377, 513
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 282
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 6 cut(s) 318, 394, 410, 462, 527, 531
SspMI CTAG 2 cut(s) 218, 507
TaaI ACNGT 2 cut(s) 263, 564
TaiI ACGT 1 cut(s) 573
TaqI TCGA 1 cut(s) 160
TasI AATT 6 cut(s) 318, 394, 410, 462, 527, 531
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 2 cut(s) 238, 348
Tru1I TTAA 3 cut(s) 342, 530, 567
Tru9I TTAA 3 cut(s) 342, 530, 567
TscAI CASTG 2 cut(s) 79, 459
TseFI GTSAC 2 cut(s) 74, 136
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 74, 136
TspDTI ATGAA 4 cut(s) 257, 304, 412, 538
TspRI CASTG 2 cut(s) 79, 459
VneI GTGCAC 1 cut(s) 147
VspI ATTAAT 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
XspI CTAG 2 cut(s) 218, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.