RchiOBHm_Chr5g0040411

Leucine rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000229
Physical Location & Seq
Forward (+)
35117967 .. 35119348
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31891

Sequence Viewer

Length: 567 bp
ATGGGTGTCACAGGCACCATTCCTCCGGAGCTAGGCAACCTATCATTTCTTGTTGAGCTGCACTTCAGAAATAACAGTTTCCATGGTACCATTCCCCAAGAATTGTCTCATTTGCGCCGCCCAAAGATTTTTAGCTTCGGATTCAACAACTTCAAAGGAACCATTCAATTCCCTCATGGTAGCATACCAAGAGAAATTGGGAACTTAACAAAGCTGAAGTTGATCCAGCTCGACTCTAACAATCTCAGAGAAATTCCAAATGAGATTGGCGCTTTAAATCAGCTGGTAGAGATAAGTGTAGAAAACAATGCCCTAGAAGGGCATCTTCCTGTGGCTATCTTCAACATGTCTTCTTTGACTGCATTGGCTTTAACATGGAACAGCTTGAATGGTACACTTCCAGACAATATATGTCAGCATCTCCCTAGTATTCAAGAGTTGTATTTGGGAAACAACCAGTTTGTCGGTCCTCTTCGGCTCTTCCATCCAAATTATGGCAATGCAAAGAGCTTGCTATATTATCATTGGGGAATAATAATTTCAGTGGAAGCATACCCAAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

188

Amino Acids

21.04

Weight (kDa)

6.7

Isoelectric Point (pI)

24.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 64 - 149 4.2e-10 Leucine-rich repeat region
LRR_8 PF13855 94 - 154 2.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 2 cut(s) 14, 86
AccB7I CCANNNNNTGG 1 cut(s) 494
AccIII TCCGGA 1 cut(s) 25
AciI CCGC 1 cut(s) 118
AclWI GGATC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 2 cut(s) 49, 236
AfaI GTAC 2 cut(s) 88, 394
AfiI CCNNNNNNNGG 3 cut(s) 32, 318, 494
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 6 cut(s) 145, 154, 167, 343, 388, 434
AluBI AGCT 8 cut(s) 31, 58, 135, 214, 229, 283, 384, 510
AluI AGCT 8 cut(s) 31, 58, 135, 214, 229, 283, 384, 510
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 217
Aor13HI TCCGGA 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 86
AspLEI GCGC 2 cut(s) 117, 272
AspS9I GGNCC 1 cut(s) 467
AvaII GGWCC 1 cut(s) 467
BanI GGYRCC 2 cut(s) 14, 86
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 3 cut(s) 32, 314, 426
BfoI RGCGCY 1 cut(s) 273
BisI GCNGC 2 cut(s) 59, 118
BlsI GCNGC 2 cut(s) 60, 119
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 3 cut(s) 16, 88, 160
BmsI GCATC 2 cut(s) 331, 427
BpiI GAAGAC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 318, 494
Bse1I ACTGG 1 cut(s) 457
Bse3DI GCAATG 1 cut(s) 505
BseAI TCCGGA 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 3 cut(s) 32, 318, 494
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 457
BseXI GCAGC 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 44
BshNI GGYRCC 2 cut(s) 14, 86
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 32, 318, 494
BsmAI GTCTC 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 25
Bsp143I GATC 1 cut(s) 222
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 258
BspEI TCCGGA 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 16, 88, 160
BspPI GGATC 1 cut(s) 217
BspQI GCTCTTC 1 cut(s) 485
BspT107I GGYRCC 2 cut(s) 14, 86
BsrDI GCAATG 1 cut(s) 505
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 477, 485
BstC8I GCNNGC 1 cut(s) 512
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 2 cut(s) 117, 272
BstKTI GATC 1 cut(s) 225
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 549
Cac8I GCNNGC 1 cut(s) 512
CfoI GCGC 2 cut(s) 117, 272
Cfr13I GGNCC 1 cut(s) 467
Csp6I GTAC 2 cut(s) 87, 393
CviAII CATG 4 cut(s) 83, 176, 346, 375
CviQI GTAC 2 cut(s) 87, 393
DdeI CTNAG 1 cut(s) 245
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
DraI TTTAAA 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 477, 485
EarI CTCTTC 2 cut(s) 477, 485
Eco130I CCWWGG 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 2 cut(s) 49, 236
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 4 cut(s) 86, 179, 349, 378
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 4 cut(s) 82, 175, 345, 374
Fnu4HI GCNGC 2 cut(s) 59, 118
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 2 cut(s) 59, 118
FspBI CTAG 3 cut(s) 32, 314, 426
GlaI GCGC 2 cut(s) 116, 271
GluI GCNGC 2 cut(s) 59, 118
HaeII RGCGCY 1 cut(s) 273
HapII CCGG 1 cut(s) 26
HhaI GCGC 2 cut(s) 117, 272
Hin1II CATG 4 cut(s) 86, 179, 349, 378
Hin6I GCGC 2 cut(s) 115, 270
HinP1I GCGC 2 cut(s) 115, 270
HinfI GANTC 2 cut(s) 141, 233
HpaII CCGG 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 3 cut(s) 68, 140, 248
Hpy188III TCNNGA 3 cut(s) 26, 401, 434
Hpy8I GTNNAC 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 61, 362, 503
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 4 cut(s) 86, 179, 349, 378
HspAI GCGC 2 cut(s) 115, 270
Kpn2I TCCGGA 1 cut(s) 25
KpnI GGTACC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 222
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 6 cut(s) 39, 239, 269, 342, 414, 470
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 2 cut(s) 331, 427
MaeI CTAG 3 cut(s) 32, 314, 426
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 5 cut(s) 317, 331, 342, 464, 472
MluCI AATT 6 cut(s) 101, 167, 195, 252, 490, 537
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 3 cut(s) 33, 183, 480
MroI TCCGGA 1 cut(s) 25
MseI TTAA 3 cut(s) 206, 275, 371
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 1 cut(s) 26
NcoI CCATGG 1 cut(s) 82
NdeII GATC 1 cut(s) 222
NlaIII CATG 4 cut(s) 86, 179, 349, 378
NlaIV GGNNCC 3 cut(s) 16, 88, 160
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 349
PciI ACATGT 1 cut(s) 345
PciSI GCTCTTC 1 cut(s) 485
PfeI GAWTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 2 cut(s) 60, 119
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 1 cut(s) 345
PspN4I GGNNCC 3 cut(s) 16, 88, 160
PspPI GGNCC 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 2 cut(s) 88, 394
RsaNI GTAC 2 cut(s) 87, 393
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 3 cut(s) 206, 275, 371
SatI GCNGC 2 cut(s) 59, 118
Sau3AI GATC 1 cut(s) 222
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 1 cut(s) 227
SetI ASST 9 cut(s) 33, 42, 60, 137, 216, 231, 285, 386, 512
SfaNI GCATC 2 cut(s) 331, 427
SinI GGWCC 1 cut(s) 467
Sse9I AATT 6 cut(s) 101, 167, 195, 252, 490, 537
SsiI CCGC 1 cut(s) 118
SspMI CTAG 3 cut(s) 32, 314, 426
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 231
TaqII GACCGA 1 cut(s) 455
TasI AATT 6 cut(s) 101, 167, 195, 252, 490, 537
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 3 cut(s) 206, 275, 371
Tru9I TTAA 3 cut(s) 206, 275, 371
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 7
TspRI CASTG 1 cut(s) 549
Van91I CCANNNNNTGG 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 1 cut(s) 252
XceI RCATGY 1 cut(s) 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XspI CTAG 3 cut(s) 32, 314, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.