Rh5CG095500

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000229
Physical Location & Seq
Forward (+)
7574917 .. 7579123
4207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG095500.1

Sequence Viewer

Length: 1044 bp
ATGGAGAGAACTAATACCCGTTTTTTTCTGGTATACTACTACTGGTGCATGGCTAGCTTAACCATAGCAGCACAAGTTATCGACGGTACTCTCACCGCAGACCAATCTGCTCTTCTTGCTCTCAAAGCCCATATCACTAGCGACCCTCATAACATGATCTTGACCAACTGGTCAACCACCACCCCCATTTGCAATTGGGCTGGCGTTACTTGTGGTGTACGCCATCTTAGAGCCGCAGCCTTGAACCTCTCTTACTCTGGTCTTGTGGGCACTATTCCTCCGCAGCTAGGCAACCTGTCATTTCTTGTTCATCTCGACTTGAGAAATAACAGCTTTCATGGTCATTTGCCCGAGGAATTGGCTCATCTGCGCCGGTTGAAGTTCATCGACTTGGGAAACAACAAATTTATGGGAGCCATTCCGTCGTGGTTCGGGTCTTTATCCAAACTTCAAAGCTTCACTTTGAGAGGTAATCAGTTTTCGGGTTCAATACCCTCTGCAATTTTCAACTTGTCTGCACTGCAAGTCGTTGATATGAATTATAACCAGCTAGCAGGCAGTATACCGAGAGAAATTGGAAACTCAACAATGCTCAAGAAGATACTCTTAGATTTTAATAACTTAGAAGAAATTCCAAACGAGATCGGCGCTTTAGATCAACTGGAAAAACTTTATGTGCAAGAAAATTCCCTAGAAGGACATCTTCCTATGGTTATCTTCAACATGTCTTCATTGATTACTCTGACTCTATATGGGAACAACTTGAAGGGTAGACTTCCTGACAATATATGTCAGAATCTTCCTCATATTCAATCGTTGGCCTTCTCTCACAACCAGTTTAATGGTCCACTTCCATCCAAATTTTGGCAGTGCAAACAACTTGTATCTTTACTATTGTCGGGTAACAACTTCAGTGGAAGCATACCCAAAACTATTGGGAACGTAACTCAGTTGAAGGAGATAAATCTTGGCTACAATTACTTGACAGTGATATCAACATTTCACAATTATATTGATCAATCCCCTGTTTCTCAGTCACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

347

Amino Acids

38.64

Weight (kDa)

8.24

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 71 2e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 75 - 180 1.6e-08 Leucine-rich repeat region
LRR_14 PF23598 150 - 251 8.9e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AasI GACNNNNNNGTC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 864
AccI GTMKAC 3 cut(s) 33, 562, 772
AciI CCGC 3 cut(s) 96, 234, 281
AcsI RAATTY 4 cut(s) 404, 630, 685, 860
AcuI CTGAAG 1 cut(s) 895
AfaI GTAC 2 cut(s) 88, 219
AfiI CCNNNNNNNGG 2 cut(s) 287, 864
AflIII ACRYGT 1 cut(s) 723
AgsI TTSAA 9 cut(s) 244, 379, 452, 489, 508, 721, 766, 812, 955
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 5 cut(s) 57, 286, 333, 456, 550
AluI AGCT 5 cut(s) 57, 286, 333, 456, 550
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 1 cut(s) 819
ApeKI GCWGC 3 cut(s) 68, 236, 283
ApoI RAATTY 4 cut(s) 404, 630, 685, 860
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 2 cut(s) 372, 650
AspS9I GGNCC 1 cut(s) 845
AsuHPI GGTGA 1 cut(s) 85
AsuNHI GCTAGC 2 cut(s) 53, 550
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 1 cut(s) 845
BaeGI GKGCMC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 720
BbvI GCAGC 3 cut(s) 80, 248, 295
BccI CCATC 2 cut(s) 231, 862
BclI TGATCA 1 cut(s) 1015
BfaI CTAG 5 cut(s) 54, 138, 287, 551, 692
BfoI RGCGCY 1 cut(s) 651
BisI GCNGC 4 cut(s) 69, 234, 237, 284
BlsI GCNGC 4 cut(s) 70, 235, 238, 285
Bme18I GGWCC 1 cut(s) 845
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 845
BmiI GGNNCC 1 cut(s) 415
BmtI GCTAGC 2 cut(s) 57, 554
BpiI GAAGAC 1 cut(s) 720
BpuEI CTTGAG 2 cut(s) 340, 578
BsaJI CCNNGG 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 864
Bse118I RCCGGY 1 cut(s) 372
Bse1I ACTGG 4 cut(s) 47, 173, 666, 835
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 1 cut(s) 854
BseLI CCNNNNNNNGG 2 cut(s) 287, 864
BseMII CTCAG 1 cut(s) 962
BseNI ACTGG 4 cut(s) 47, 173, 666, 835
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 3 cut(s) 80, 248, 295
BsgI GTGCAG 1 cut(s) 501
BshFI GGCC 1 cut(s) 821
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 287, 864
BsnI GGCC 1 cut(s) 821
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 4 cut(s) 156, 642, 655, 1015
BspACI CCGC 3 cut(s) 96, 234, 281
BspANI GGCC 1 cut(s) 821
BspCNI CTCAG 1 cut(s) 961
BspLI GGNNCC 1 cut(s) 415
BspOI GCTAGC 2 cut(s) 57, 554
BspQI GCTCTTC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 372
BsrI ACTGG 4 cut(s) 47, 173, 666, 835
BssAI RCCGGY 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 4 cut(s) 156, 642, 655, 1015
BssNAI GTATAC 2 cut(s) 34, 563
Bst1107I GTATAC 2 cut(s) 34, 563
Bst4CI ACNGT 2 cut(s) 86, 988
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 4 cut(s) 55, 202, 552, 556
BstDEI CTNAG 5 cut(s) 227, 607, 622, 948, 1032
BstF5I GGATG 1 cut(s) 854
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 2 cut(s) 372, 650
BstKTI GATC 4 cut(s) 159, 645, 658, 1018
BstMBI GATC 4 cut(s) 156, 642, 655, 1015
BstMWI GCNNNNNNNGC 3 cut(s) 54, 116, 125
BstNSI RCATGY 1 cut(s) 727
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 3 cut(s) 80, 248, 295
BstV2I GAAGAC 1 cut(s) 720
BstXI CCANNNNNNTGG 1 cut(s) 842
BstZ17I GTATAC 2 cut(s) 34, 563
BsuRI GGCC 1 cut(s) 821
BtsCI GGATG 1 cut(s) 854
BtsI GCAGTG 2 cut(s) 518, 875
BtsIMutI CAGTG 4 cut(s) 518, 875, 919, 993
Cac8I GCNNGC 4 cut(s) 55, 202, 552, 556
CfoI GCGC 2 cut(s) 372, 650
Cfr10I RCCGGY 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 845
Csp6I GTAC 2 cut(s) 87, 218
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
CviAII CATG 4 cut(s) 49, 154, 338, 724
CviQI GTAC 2 cut(s) 87, 218
DdeI CTNAG 5 cut(s) 227, 607, 622, 948, 1032
DpnI GATC 4 cut(s) 158, 644, 657, 1017
DpnII GATC 4 cut(s) 156, 642, 655, 1015
DrdI GACNNNNNNGTC 1 cut(s) 169
DseDI GACNNNNNNGTC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 993
Eco47I GGWCC 1 cut(s) 845
Eco57I CTGAAG 1 cut(s) 895
Eco88I CYCGRG 1 cut(s) 350
EcoRV GATATC 1 cut(s) 993
FaeI CATG 4 cut(s) 52, 157, 341, 727
FalI AAGNNNNNCTT 6 cut(s) 445, 477, 590, 622, 687, 719
FatI CATG 4 cut(s) 48, 153, 337, 723
FbaI TGATCA 1 cut(s) 1015
FblI GTMKAC 3 cut(s) 33, 562, 772
Fnu4HI GCNGC 4 cut(s) 69, 234, 237, 284
FokI GGATG 1 cut(s) 841
Fsp4HI GCNGC 4 cut(s) 69, 234, 237, 284
FspBI CTAG 5 cut(s) 54, 138, 287, 551, 692
GlaI GCGC 2 cut(s) 371, 649
GluI GCNGC 4 cut(s) 69, 234, 237, 284
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 1 cut(s) 821
HapII CCGG 1 cut(s) 373
HhaI GCGC 2 cut(s) 372, 650
Hin1II CATG 4 cut(s) 52, 157, 341, 727
Hin6I GCGC 2 cut(s) 370, 648
HinP1I GCGC 2 cut(s) 370, 648
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 2 cut(s) 745, 796
HpaII CCGG 1 cut(s) 373
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 6 cut(s) 34, 174, 218, 563, 773, 848
Hpy188I TCNGA 2 cut(s) 744, 795
Hpy188III TCNNGA 4 cut(s) 160, 314, 595, 779
Hpy8I GTNNAC 6 cut(s) 34, 174, 218, 563, 773, 848
Hpy99I CGWCG 2 cut(s) 86, 427
HpyAV CCTTC 4 cut(s) 689, 760, 832, 949
HpyCH4III ACNGT 2 cut(s) 86, 988
HpyCH4IV ACGT 2 cut(s) 942, 1039
HpyCH4V TGCA 7 cut(s) 48, 192, 500, 518, 523, 679, 873
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 116, 125
HpyF3I CTNAG 5 cut(s) 227, 607, 622, 948, 1032
HpySE526I ACGT 2 cut(s) 942, 1039
Hsp92II CATG 4 cut(s) 52, 157, 341, 727
HspAI GCGC 2 cut(s) 370, 648
Ksp22I TGATCA 1 cut(s) 1015
Kzo9I GATC 4 cut(s) 156, 642, 655, 1015
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 413
Lsp1109I GCAGC 3 cut(s) 80, 248, 295
MaeI CTAG 5 cut(s) 54, 138, 287, 551, 692
MaeII ACGT 2 cut(s) 942, 1039
MaeIII GTNAC 4 cut(s) 205, 902, 943, 1035
MalI GATC 4 cut(s) 158, 644, 657, 1017
MboI GATC 4 cut(s) 156, 642, 655, 1015
MboII GAAGA 7 cut(s) 104, 610, 638, 695, 709, 720, 791
MfeI CAATTG 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 272
MlyI GAGTC 1 cut(s) 739
MnlI CCTC 7 cut(s) 156, 257, 288, 346, 461, 505, 813
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 3 cut(s) 59, 615, 840
MspI CCGG 1 cut(s) 373
MunI CAATTG 1 cut(s) 193
MwoI GCNNNNNNNGC 3 cut(s) 54, 116, 125
NdeII GATC 4 cut(s) 156, 642, 655, 1015
NheI GCTAGC 2 cut(s) 53, 550
NlaIII CATG 4 cut(s) 52, 157, 341, 727
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 1035
NspI RCATGY 1 cut(s) 727
PciI ACATGT 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 796
PflMI CCANNNNNTGG 1 cut(s) 864
PkrI GCNGC 4 cut(s) 70, 235, 238, 285
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
PscI ACATGT 1 cut(s) 723
PsiI TTATAA 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 845
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
RsaI GTAC 2 cut(s) 88, 219
RsaNI GTAC 2 cut(s) 87, 218
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 3 cut(s) 59, 615, 840
SatI GCNGC 4 cut(s) 69, 234, 237, 284
Sau3AI GATC 4 cut(s) 156, 642, 655, 1015
Sau96I GGNCC 1 cut(s) 845
SchI GAGTC 1 cut(s) 739
SduI GDGCHC 1 cut(s) 272
SinI GGWCC 1 cut(s) 845
SmlI CTYRAG 2 cut(s) 319, 593
SmoI CTYRAG 2 cut(s) 319, 593
SsiI CCGC 3 cut(s) 96, 234, 281
SspMI CTAG 5 cut(s) 54, 138, 287, 551, 692
TaaI ACNGT 2 cut(s) 86, 988
TaiI ACGT 2 cut(s) 945, 1042
TaqI TCGA 3 cut(s) 81, 315, 387
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 796
Tru1I TTAA 3 cut(s) 59, 615, 840
Tru9I TTAA 3 cut(s) 59, 615, 840
TscAI CASTG 4 cut(s) 525, 875, 919, 993
TseFI GTSAC 1 cut(s) 1035
TseI GCWGC 3 cut(s) 68, 236, 283
Tsp45I GTSAC 1 cut(s) 1035
TspDTI ATGAA 5 cut(s) 299, 326, 373, 551, 720
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 4 cut(s) 525, 875, 919, 993
Van91I CCANNNNNTGG 1 cut(s) 864
VpaK11BI GGWCC 1 cut(s) 845
XapI RAATTY 4 cut(s) 404, 630, 685, 860
XceI RCATGY 1 cut(s) 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 861
XmiI GTMKAC 3 cut(s) 33, 562, 772
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 5 cut(s) 54, 138, 287, 551, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.