Rh5CG421300

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000229
Physical Location & Seq
Forward (+)
58088353 .. 58089596
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG421300.1

Sequence Viewer

Length: 1008 bp
ATGGAGAGAAGTACTTGGTTCTTCCTGGTGGTATACTACTACTGTTGTATGGCTAGCTTAACCACGGCAGCACAAACCAAAATCAGCACAGACCAGTATGCTCTTCTTGCTTTCAAATCCCGTATCACCGATGACCCTCAAAACAAGATCTTGTCCAACTGGTCAACCACCACTCAAATCTGCAACTGGGCTGGTGTCACTTGTGGTGCAGGCCATTATCGAGTCACAAACTTGAATATCTCTTACCTTGGTCTTACAGGCACCATTGCTCCCGAACTAGGCAACCTATCATTTCTTGTTGATCTGGACTTCACAAATAACAGCTTCCACGGTTCCTTGCCCCAGGAATTGGCTAGTTTGCAGCGATTGAAGTTCATTAGTTTCAGATTCAACAATTTTATGGGTTCCTTACCCGCTGCCATGTTCAACTTATCTGCACTCCAAATAATTGATCTAAGATACAACTACCTATCAGGTAGCATACCAAGAGAAATTAAAAACTCAACTATGTTGAAGGAGATATACCTTGATTATAACAAGTTCAAAGAACTTCCAAACGAAATTGGCAGTTTGGATAAGCTGGAGAAGTTGTGGGTGCAATTCAACTCTCTTCAAGGGCATGTTCCTGTCGCTTTCTTCAACATGTCTTATTTGACTACTTTGACTCTAGATGGCAACAACTTGAGTGGTAGTCTTATTGACAATATACATCTTCCGAGCATTGAAGTGTTGTCGTTGTCGGGCAACAATTTTGACAGCCTAATTCCATCCACATCATGGGAGTGCAAACAGCTTCTCTATTTATCATTGAAGAGCAACCATTTCAGTGGAAGCATATCCAAGAATATCGGCAACTTAACCAATATAAAGATTATTTTGCTCGGCTACAACAATCTGACAGGTACCTGTATCTTCAATAATCATCTTTTATATATAGAGACACACACACACAGCCCTTCGGATATCTTTTTTTTGGCAATTTTAATATATAGATCGCTTATTAGATAA

Protein Analysis

335

Amino Acids

37.82

Weight (kDa)

7.07

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 68 1.7e-11 Leucine rich repeat N-terminal domain
LRR_8 PF13855 131 - 181 4.7e-06 Leucine rich repeat
LRR_8 PF13855 171 - 228 1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 534
Acc65I GGTACC 1 cut(s) 902
AccB1I GGYRCC 2 cut(s) 260, 902
AccB7I CCANNNNNTGG 2 cut(s) 349, 777
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 414
AfaI GTAC 2 cut(s) 13, 904
AfiI CCNNNNNNNGG 3 cut(s) 278, 349, 777
AflIII ACRYGT 1 cut(s) 642
AjnI CCWGG 2 cut(s) 24, 342
AluBI AGCT 4 cut(s) 57, 324, 580, 793
AluI AGCT 4 cut(s) 57, 324, 580, 793
Alw26I GTCTC 1 cut(s) 932
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 3 cut(s) 68, 361, 416
Asp718I GGTACC 1 cut(s) 902
AsuHPI GGTGA 1 cut(s) 118
AsuNHI GCTAGC 1 cut(s) 53
BanI GGYRCC 2 cut(s) 260, 902
BarI GAAGNNNNNNTAC 2 cut(s) 506, 538
BbvI GCAGC 3 cut(s) 80, 373, 403
BccI CCATC 2 cut(s) 665, 775
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 2 cut(s) 26, 344
BcoDI GTCTC 1 cut(s) 932
BfaI CTAG 4 cut(s) 54, 278, 354, 668
BglII AGATCT 1 cut(s) 147
BisI GCNGC 3 cut(s) 69, 362, 417
BlsI GCNGC 3 cut(s) 70, 363, 418
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 26, 344
BmiI GGNNCC 4 cut(s) 262, 334, 406, 904
BmrFI CCNGG 2 cut(s) 26, 344
BmrI ACTGGG 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 602
BpuEI CTTGAG 1 cut(s) 703
BsaJI CCNNGG 4 cut(s) 63, 247, 328, 342
BsaXI ACNNNNNCTCC 4 cut(s) 253, 283, 575, 605
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 349, 777
Bse1I ACTGG 3 cut(s) 94, 164, 191
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 26, 344
BseDI CCNNGG 4 cut(s) 63, 247, 328, 342
BseGI GGATG 1 cut(s) 767
BseLI CCNNNNNNNGG 3 cut(s) 278, 349, 777
BseMI GCAATG 1 cut(s) 264
BseNI ACTGG 3 cut(s) 94, 164, 191
BseXI GCAGC 3 cut(s) 80, 373, 403
BsgI GTGCAG 2 cut(s) 228, 420
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 2 cut(s) 260, 902
BslI CCNNNNNNNGG 3 cut(s) 278, 349, 777
BsmAI GTCTC 1 cut(s) 932
BsnI GGCC 1 cut(s) 213
Bsp143I GATC 4 cut(s) 147, 301, 451, 992
BspACI CCGC 1 cut(s) 414
BspANI GGCC 1 cut(s) 213
BspLI GGNNCC 4 cut(s) 262, 334, 406, 904
BspOI GCTAGC 1 cut(s) 57
BspQI GCTCTTC 2 cut(s) 108, 806
BspT107I GGYRCC 2 cut(s) 260, 902
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 3 cut(s) 94, 164, 191
BssECI CCNNGG 4 cut(s) 63, 247, 328, 342
BssMI GATC 4 cut(s) 147, 301, 451, 992
BssNAI GTATAC 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 26, 344
Bst4CI ACNGT 2 cut(s) 44, 332
Bst6I CTCTTC 3 cut(s) 108, 615, 806
BstC8I GCNNGC 2 cut(s) 55, 211
BstDEI CTNAG 1 cut(s) 455
BstDSI CCRYGG 2 cut(s) 63, 328
BstF5I GGATG 1 cut(s) 767
BstKTI GATC 4 cut(s) 150, 304, 454, 995
BstMAI GTCTC 1 cut(s) 932
BstMBI GATC 4 cut(s) 147, 301, 451, 992
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 2 cut(s) 26, 344
BstNSI RCATGY 2 cut(s) 623, 646
BstSCI CCNGG 2 cut(s) 24, 342
BstV1I GCAGC 3 cut(s) 80, 373, 403
BstX2I RGATCY 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 827
BstYI RGATCY 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 2 cut(s) 63, 328
BtsCI GGATG 1 cut(s) 767
BtsIMutI CAGTG 1 cut(s) 832
Cac8I GCNNGC 2 cut(s) 55, 211
Csp6I GTAC 2 cut(s) 12, 903
CspCI CAANNNNNGTGG 2 cut(s) 667, 702
CviAII CATG 4 cut(s) 421, 620, 643, 777
CviQI GTAC 2 cut(s) 12, 903
DdeI CTNAG 1 cut(s) 455
DpnI GATC 4 cut(s) 149, 303, 453, 994
DpnII GATC 4 cut(s) 147, 301, 451, 992
Eam1104I CTCTTC 3 cut(s) 108, 615, 806
EarI CTCTTC 3 cut(s) 108, 615, 806
Eco130I CCWWGG 1 cut(s) 247
Eco32I GATATC 1 cut(s) 964
EcoRII CCWGG 2 cut(s) 24, 342
EcoRV GATATC 1 cut(s) 964
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 4 cut(s) 424, 623, 646, 780
FatI CATG 4 cut(s) 420, 619, 642, 776
FauI CCCGC 1 cut(s) 421
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 69, 362, 417
FokI GGATG 1 cut(s) 754
Fsp4HI GCNGC 3 cut(s) 69, 362, 417
FspBI CTAG 4 cut(s) 54, 278, 354, 668
GluI GCNGC 3 cut(s) 69, 362, 417
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 1 cut(s) 213
Hin1II CATG 4 cut(s) 424, 623, 646, 780
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 3 cut(s) 222, 387, 664
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 34, 165
Hpy188I TCNGA 4 cut(s) 386, 717, 897, 961
Hpy188III TCNNGA 3 cut(s) 272, 305, 668
Hpy8I GTNNAC 2 cut(s) 34, 165
HpyAV CCTTC 2 cut(s) 508, 966
HpyCH4III ACNGT 2 cut(s) 44, 332
HpyCH4V TGCA 6 cut(s) 183, 209, 361, 437, 598, 786
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 455
Hsp92II CATG 4 cut(s) 424, 623, 646, 780
KpnI GGTACC 1 cut(s) 906
Kzo9I GATC 4 cut(s) 147, 301, 451, 992
LguI GCTCTTC 2 cut(s) 108, 806
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 3 cut(s) 80, 373, 403
MaeI CTAG 4 cut(s) 54, 278, 354, 668
MaeIII GTNAC 2 cut(s) 196, 223
MalI GATC 4 cut(s) 149, 303, 453, 994
MboI GATC 4 cut(s) 147, 301, 451, 992
MboII GAAGA 7 cut(s) 13, 95, 602, 628, 704, 823, 904
MflI RGATCY 1 cut(s) 147
MluCI AATT 9 cut(s) 347, 394, 447, 492, 561, 599, 748, 762, 978
MlyI GAGTC 2 cut(s) 231, 658
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 1 cut(s) 147
MseI TTAA 4 cut(s) 59, 495, 857, 983
MslI CAYNNNNRTG 3 cut(s) 725, 781, 825
MspA1I CMGCKG 1 cut(s) 416
MspR9I CCNGG 2 cut(s) 26, 344
MvaI CCWGG 2 cut(s) 26, 344
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 4 cut(s) 147, 301, 451, 992
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 4 cut(s) 424, 623, 646, 780
NlaIV GGNNCC 4 cut(s) 262, 334, 406, 904
NmeAIII GCCGAG 1 cut(s) 861
NmuCI GTSAC 2 cut(s) 196, 223
NspI RCATGY 2 cut(s) 623, 646
PciI ACATGT 1 cut(s) 642
PciSI GCTCTTC 2 cut(s) 108, 806
PfeI GAWTC 1 cut(s) 387
PflMI CCANNNNNTGG 2 cut(s) 349, 777
PkrI GCNGC 3 cut(s) 70, 363, 418
PleI GAGTC 2 cut(s) 230, 658
PpsI GAGTC 2 cut(s) 230, 658
PscI ACATGT 1 cut(s) 642
PsiI TTATAA 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 24, 342
PspGI CCWGG 2 cut(s) 24, 342
PspN4I GGNNCC 4 cut(s) 262, 334, 406, 904
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 2 cut(s) 13, 904
RsaNI GTAC 2 cut(s) 12, 903
RseI CAYNNNNRTG 3 cut(s) 725, 781, 825
SapI GCTCTTC 2 cut(s) 108, 806
SaqAI TTAA 4 cut(s) 59, 495, 857, 983
SatI GCNGC 3 cut(s) 69, 362, 417
Sau3AI GATC 4 cut(s) 147, 301, 451, 992
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 2 cut(s) 231, 658
ScrFI CCNGG 2 cut(s) 26, 344
SmiMI CAYNNNNRTG 3 cut(s) 725, 781, 825
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
Sse9I AATT 9 cut(s) 347, 394, 447, 492, 561, 599, 748, 762, 978
SsiI CCGC 1 cut(s) 414
SspMI CTAG 4 cut(s) 54, 278, 354, 668
StyD4I CCNGG 2 cut(s) 24, 342
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 44, 332
TaqI TCGA 1 cut(s) 220
TasI AATT 9 cut(s) 347, 394, 447, 492, 561, 599, 748, 762, 978
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 4 cut(s) 59, 495, 857, 983
Tru9I TTAA 4 cut(s) 59, 495, 857, 983
TscAI CASTG 1 cut(s) 832
TseFI GTSAC 2 cut(s) 196, 223
TseI GCWGC 3 cut(s) 68, 361, 416
Tsp45I GTSAC 2 cut(s) 196, 223
TspDTI ATGAA 1 cut(s) 364
TspRI CASTG 1 cut(s) 832
Van91I CCANNNNNTGG 2 cut(s) 349, 777
XbaI TCTAGA 1 cut(s) 667
XceI RCATGY 2 cut(s) 623, 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 774
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 4 cut(s) 54, 278, 354, 668
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.