Rorug05G0184800

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000229
Physical Location & Seq
Forward (+)
17885047 .. 17886753
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0184800.1

Sequence Viewer

Length: 894 bp
ATGGATTCTCAATTCTATAATGACTATTCTCTCCCTTCTGAGTTTTGCGGCTACCCAACTCCGGCTGTGGTGACCGGTTGCAGTCCAGGTATGGGTGGAGCAATGTGGGGTACTAGTAGTCGTGAAGAAAACCTGGTACCGATATTCTGTGATAACAATGGTACTGCTAGTTTTGATATCGTGTCACCGGAGTCTGACATCTCTTCGTGTGCTATTGGGGCGGCAACAACGTTCCCGGAGCTACTTGGGTTTTCGGAAGACGCCGTGGCGCCTGTTTCATTTTCAGAGTATAGTCATCTGGGGTTGAATGGAATTGCAGGGCTGAATCAGAATTTTGGTGGTGGAGATTCTTACCTTCAGCTATATAATAAAGGTAATATTATGCGTGATCAGTTTGGGGATCAAGAATGCTGTACTGGATTCATACCTGCTGATTCTAAGCCTCTTGGCCTTGCTGTTCAAGAAAATTGGGGATTCAATCAAGGAAACCAGGTGCCTACAATGGAAGATCAGTCGACAAATATGAAGGTGGGACGGTATTCAGAAGAAGAGAGGAAAGAAAGGATTGAGAGGTATTTGAAGAAAAGAAACCAAAGGAACTTTAACAAAACCATTAAGTATGCTTGTCGCAAAACCCTAGCTGATAGAAGAGTCCGAGTTCGTGGGAGATTTGCAAGGAACAGCAGTAATGAACAGCTAATTAATGAAGATCTAACTCATCAAGAAATGGCAACAAAAAAGATTGATGCCAATTGCAACAATCATGTTTGCAATGACATATCTGAACAACTGTATTGTAGCGGCGGTGCCGTCCAGATCAAATATGACGAGGAGGACTGGCTGCAAGAAGCTATGGCAAGTCTAGTGTACTTACCTTATGTCACCGCTGGCTGA

Protein Analysis

297

Amino Acids

33.01

Weight (kDa)

4.81

Isoelectric Point (pI)

51.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 185 - 227 2.8e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 436
Acc65I GGTACC 1 cut(s) 136
AccB1I GGYRCC 4 cut(s) 136, 268, 493, 806
AccI GTMKAC 1 cut(s) 515
AciI CCGC 5 cut(s) 48, 221, 801, 804, 885
AclI AACGTT 1 cut(s) 230
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 2 cut(s) 261, 269
AfaI GTAC 5 cut(s) 112, 138, 163, 415, 869
AfiI CCNNNNNNNGG 2 cut(s) 61, 92
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 307, 461, 478, 580
AhlI ACTAGT 1 cut(s) 113
AjnI CCWGG 3 cut(s) 85, 132, 489
AluBI AGCT 5 cut(s) 241, 361, 641, 697, 851
AluI AGCT 5 cut(s) 241, 361, 641, 697, 851
AlwI GGATC 1 cut(s) 408
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 841
ApoI RAATTY 1 cut(s) 331
AseI ATTAAT 1 cut(s) 702
AsiGI ACCGGT 1 cut(s) 74
Asp718I GGTACC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 3 cut(s) 82, 177, 874
BanI GGYRCC 4 cut(s) 136, 268, 493, 806
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 828
BceAI ACGGC 2 cut(s) 248, 794
BciT130I CCWGG 3 cut(s) 87, 134, 491
BclI TGATCA 1 cut(s) 388
BcnI CCSGG 1 cut(s) 236
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 4 cut(s) 114, 168, 638, 863
BfoI RGCGCY 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 436
BglII AGATCT 1 cut(s) 709
BisI GCNGC 4 cut(s) 49, 222, 802, 842
BlsI GCNGC 4 cut(s) 50, 223, 803, 843
Bme1390I CCNGG 4 cut(s) 87, 134, 236, 491
BmiI GGNNCC 4 cut(s) 138, 270, 495, 808
BmrFI CCNGG 4 cut(s) 87, 134, 236, 491
BmsI GCATC 1 cut(s) 736
BpiI GAAGAC 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 236
BsaHI GRCGYC 2 cut(s) 261, 269
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 2 cut(s) 74, 187
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 92
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 421, 842
Bse3DI GCAATG 2 cut(s) 108, 778
BseBI CCWGG 3 cut(s) 87, 134, 491
BseDI CCNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 61, 92
BseMI GCAATG 2 cut(s) 108, 778
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 421, 842
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 1 cut(s) 828
BshFI GGCC 1 cut(s) 450
BshNI GGYRCC 4 cut(s) 136, 268, 493, 806
BshTI ACCGGT 1 cut(s) 74
BsiSI CCGG 4 cut(s) 62, 75, 188, 236
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 2 cut(s) 61, 92
BsmFI GGGAC 1 cut(s) 546
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 1 cut(s) 450
Bsp143I GATC 5 cut(s) 388, 400, 508, 709, 816
BspACI CCGC 5 cut(s) 48, 221, 801, 804, 885
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 4 cut(s) 138, 270, 495, 808
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 1 cut(s) 408
BspT107I GGYRCC 4 cut(s) 136, 268, 493, 806
BsrDI GCAATG 2 cut(s) 108, 778
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 2 cut(s) 421, 842
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 5 cut(s) 388, 400, 508, 709, 816
BssNI GRCGYC 2 cut(s) 261, 269
Bst2UI CCWGG 3 cut(s) 87, 134, 491
Bst4CI ACNGT 2 cut(s) 537, 792
Bst6I CTCTTC 3 cut(s) 208, 543, 643
BstACI GRCGYC 2 cut(s) 261, 269
BstC8I GCNNGC 1 cut(s) 889
BstDEI CTNAG 2 cut(s) 39, 438
BstDSI CCRYGG 1 cut(s) 264
BstEII GGTNACC 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 5 cut(s) 391, 403, 511, 712, 819
BstMBI GATC 5 cut(s) 388, 400, 508, 709, 816
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 3 cut(s) 87, 134, 491
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 4 cut(s) 85, 132, 234, 489
BstV1I GCAGC 1 cut(s) 828
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BsuRI GGCC 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 889
CfoI GCGC 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 74
CseI GACGC 1 cut(s) 269
CsiI ACCWGGT 2 cut(s) 132, 489
Csp6I GTAC 5 cut(s) 111, 137, 162, 414, 868
CspAI ACCGGT 1 cut(s) 74
CviAII CATG 1 cut(s) 764
CviQI GTAC 5 cut(s) 111, 137, 162, 414, 868
DdeI CTNAG 2 cut(s) 39, 438
DinI GGCGCC 1 cut(s) 270
DpnI GATC 5 cut(s) 390, 402, 510, 711, 818
DpnII GATC 5 cut(s) 388, 400, 508, 709, 816
Eam1104I CTCTTC 3 cut(s) 208, 543, 643
EarI CTCTTC 3 cut(s) 208, 543, 643
Eco32I GATATC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 341
Eco91I GGTNACC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 70
EcoRII CCWGG 3 cut(s) 85, 132, 489
EcoRV GATATC 1 cut(s) 178
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
FaeI CATG 1 cut(s) 767
FaqI GGGAC 1 cut(s) 546
FatI CATG 1 cut(s) 763
FbaI TGATCA 1 cut(s) 388
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 4 cut(s) 49, 222, 802, 842
Fsp4HI GCNGC 4 cut(s) 49, 222, 802, 842
FspBI CTAG 4 cut(s) 114, 168, 638, 863
GlaI GCGC 1 cut(s) 270
GluI GCNGC 4 cut(s) 49, 222, 802, 842
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 1 cut(s) 450
HapII CCGG 4 cut(s) 62, 75, 188, 236
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 2 cut(s) 261, 269
Hin1II CATG 1 cut(s) 767
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 8 cut(s) 5, 191, 325, 347, 420, 434, 474, 651
HpaII CCGG 4 cut(s) 62, 75, 188, 236
HphI GGTGA 3 cut(s) 82, 177, 874
Hpy166II GTNNAC 2 cut(s) 516, 868
Hpy188I TCNGA 8 cut(s) 40, 196, 256, 286, 330, 544, 656, 784
Hpy188III TCNNGA 5 cut(s) 122, 404, 461, 722, 814
Hpy8I GTNNAC 2 cut(s) 516, 868
HpyAV CCTTC 3 cut(s) 45, 365, 520
HpyCH4III ACNGT 2 cut(s) 537, 792
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 6 cut(s) 81, 317, 674, 756, 771, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 39, 438
HpySE526I ACGT 1 cut(s) 230
Hsp92I GRCGYC 2 cut(s) 261, 269
Hsp92II CATG 1 cut(s) 767
HspAI GCGC 1 cut(s) 269
KasI GGCGCC 1 cut(s) 268
KpnI GGTACC 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 5 cut(s) 388, 400, 508, 709, 816
LmnI GCTCC 2 cut(s) 98, 238
Lsp1109I GCAGC 1 cut(s) 828
LweI GCATC 1 cut(s) 736
MabI ACCWGGT 2 cut(s) 132, 489
MaeI CTAG 4 cut(s) 114, 168, 638, 863
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 3 cut(s) 70, 183, 880
MalI GATC 5 cut(s) 390, 402, 510, 711, 818
MboI GATC 5 cut(s) 388, 400, 508, 709, 816
MboII GAAGA 9 cut(s) 137, 195, 269, 518, 557, 560, 592, 660, 719
MfeI CAATTG 1 cut(s) 751
MflI RGATCY 1 cut(s) 709
MluCI AATT 6 cut(s) 11, 312, 331, 466, 699, 751
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 2 cut(s) 200, 660
MnlI CCTC 5 cut(s) 453, 546, 564, 823, 826
MseI TTAA 3 cut(s) 603, 615, 702
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 4 cut(s) 62, 75, 188, 236
MspR9I CCNGG 4 cut(s) 87, 134, 236, 491
MunI CAATTG 1 cut(s) 751
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 3 cut(s) 87, 134, 491
MwoI GCNNNNNNNGC 1 cut(s) 218
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 1 cut(s) 236
NdeII GATC 5 cut(s) 388, 400, 508, 709, 816
NlaIII CATG 1 cut(s) 767
NlaIV GGNNCC 4 cut(s) 138, 270, 495, 808
NmuCI GTSAC 3 cut(s) 70, 183, 880
PctI GAATGC 1 cut(s) 413
PfeI GAWTC 6 cut(s) 5, 325, 347, 420, 434, 474
PfoI TCCNGGA 1 cut(s) 234
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 4 cut(s) 50, 223, 803, 843
PleI GAGTC 2 cut(s) 199, 659
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 2 cut(s) 199, 659
PshBI ATTAAT 1 cut(s) 702
Psp1406I AACGTT 1 cut(s) 230
Psp6I CCWGG 3 cut(s) 85, 132, 489
PspEI GGTNACC 1 cut(s) 70
PspGI CCWGG 3 cut(s) 85, 132, 489
PspN4I GGNNCC 4 cut(s) 138, 270, 495, 808
PsuI RGATCY 1 cut(s) 709
RsaI GTAC 5 cut(s) 112, 138, 163, 415, 869
RsaNI GTAC 5 cut(s) 111, 137, 162, 414, 868
SalI GTCGAC 1 cut(s) 514
SaqAI TTAA 3 cut(s) 603, 615, 702
SatI GCNGC 4 cut(s) 49, 222, 802, 842
Sau3AI GATC 5 cut(s) 388, 400, 508, 709, 816
SchI GAGTC 2 cut(s) 200, 660
ScrFI CCNGG 4 cut(s) 87, 134, 236, 491
SexAI ACCWGGT 2 cut(s) 132, 489
SfaNI GCATC 1 cut(s) 736
SfoI GGCGCC 1 cut(s) 270
SpeI ACTAGT 1 cut(s) 113
Sse9I AATT 6 cut(s) 11, 312, 331, 466, 699, 751
SsiI CCGC 5 cut(s) 48, 221, 801, 804, 885
SspDI GGCGCC 1 cut(s) 268
SspI AATATT 1 cut(s) 379
SspMI CTAG 4 cut(s) 114, 168, 638, 863
StyD4I CCNGG 4 cut(s) 85, 132, 234, 489
TaaI ACNGT 2 cut(s) 537, 792
TaiI ACGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 515
TasI AATT 6 cut(s) 11, 312, 331, 466, 699, 751
TatI WGTACW 2 cut(s) 413, 867
TauI GCSGC 3 cut(s) 51, 224, 804
TfiI GAWTC 6 cut(s) 5, 325, 347, 420, 434, 474
Tru1I TTAA 3 cut(s) 603, 615, 702
Tru9I TTAA 3 cut(s) 603, 615, 702
TseFI GTSAC 3 cut(s) 70, 183, 880
TseI GCWGC 1 cut(s) 841
Tsp45I GTSAC 3 cut(s) 70, 183, 880
TspDTI ATGAA 5 cut(s) 267, 412, 539, 705, 720
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 515
XspI CTAG 4 cut(s) 114, 168, 638, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.