Rmu_sc0005187.1_g000011

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005187.1
Physical Location & Seq
Reverse (-)
44019 .. 44414
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005187.1_g000011.1.cds

Sequence Viewer

Length: 396 bp
atggcagcacaaaccaacatcagcacagaccaatctgctcttcttgctctcaaatcccgtatcatcagtgaccctcataacaagatcttcaccaactggtcaaccacgactcatgtttgcaacttggttggtgtgacttgtggtgctccttatcatcgagtcacaatcttgaacctctccaacatggaactcacaggcaccattcctccggagctaagcaatctttattttcttgttaggctaagctttaaaaataacagctttcatggtaccctgccgttagaattaggtcatttgcgtcgattgaaggggattgatttcacatacaacaattttaaaggaatcattccatcatggtttgcccaaacttcaagcctcatctccttatggcaataa

Protein Analysis

131

Amino Acids

14.69

Weight (kDa)

9.39

Isoelectric Point (pI)

23.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 269
AccB1I GGYRCC 2 cut(s) 197, 269
AccIII TCCGGA 1 cut(s) 208
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 3 cut(s) 172, 307, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 3 cut(s) 214, 246, 261
AluI AGCT 3 cut(s) 214, 246, 261
Alw21I GWGCWC 1 cut(s) 148
Aor13HI TCCGGA 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 5
Asp718I GGTACC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 82
BanI GGYRCC 2 cut(s) 197, 269
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 358
BceAI ACGGC 1 cut(s) 262
BglII AGATCT 1 cut(s) 84
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 2 cut(s) 215, 242
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 199, 271
Bpu1102I GCTNAGC 2 cut(s) 215, 242
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bse1I ACTGG 1 cut(s) 101
BseAI TCCGGA 1 cut(s) 208
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 17
BshNI GGYRCC 2 cut(s) 197, 269
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 148
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 1 cut(s) 84
Bsp1720I GCTNAGC 2 cut(s) 215, 242
BspEI TCCGGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 199, 271
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 2 cut(s) 197, 269
BsrI ACTGG 1 cut(s) 101
BssMI GATC 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 215, 242
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 73
CseI GACGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 270
CviAII CATG 4 cut(s) 113, 184, 266, 354
CviJI RGCY 5 cut(s) 214, 241, 246, 261, 375
CviKI_1 RGCY 5 cut(s) 214, 241, 246, 261, 375
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 2 cut(s) 215, 242
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
DraI TTTAAA 2 cut(s) 250, 337
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
FaeI CATG 4 cut(s) 116, 187, 269, 357
FaiI YATR 7 cut(s) 78, 114, 185, 267, 325, 355, 388
FatI CATG 4 cut(s) 112, 183, 265, 353
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 287
Hin1II CATG 4 cut(s) 116, 187, 269, 357
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 3 cut(s) 109, 159, 342
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 169, 209
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 1 cut(s) 303
HpyAV CCTTC 1 cut(s) 301
HpyCH4V TGCA 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 215, 242
Hsp92II CATG 4 cut(s) 116, 187, 269, 357
Kpn2I TCCGGA 1 cut(s) 208
KpnI GGTACC 1 cut(s) 273
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 151, 211
LpnPI CCDG 4 cut(s) 82, 180, 222, 287
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 3 cut(s) 68, 133, 160
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 2 cut(s) 32, 79
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 284, 331
MlyI GAGTC 2 cut(s) 103, 168
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 4 cut(s) 84, 185, 216, 386
MroI TCCGGA 1 cut(s) 208
MseI TTAA 2 cut(s) 249, 336
MspI CCGG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 1 cut(s) 84
NlaIII CATG 4 cut(s) 116, 187, 269, 357
NlaIV GGNNCC 2 cut(s) 199, 271
NmuCI GTSAC 3 cut(s) 68, 133, 160
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 342
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 103, 167
PpsI GAGTC 2 cut(s) 103, 167
PspN4I GGNNCC 2 cut(s) 199, 271
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 249, 336
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 2 cut(s) 103, 168
SduI GDGCHC 1 cut(s) 148
SetI ASST 5 cut(s) 177, 216, 248, 263, 292
Sse9I AATT 2 cut(s) 284, 331
TaqI TCGA 2 cut(s) 157, 301
TasI AATT 2 cut(s) 284, 331
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 2 cut(s) 249, 336
Tru9I TTAA 2 cut(s) 249, 336
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 3 cut(s) 68, 133, 160
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 3 cut(s) 68, 133, 160
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.