Rmu_sc0038501.1_g000001

Adaptor-related protein complex 5, beta 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038501.1
OG0000229
Physical Location & Seq
Forward (+)
68 .. 621
554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038501.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atgaccgataagccgccgaagcagtccctatcgccgttgtcgaagcccgtcactctccaagactgggagtccttaatcgacgatttccagcatggcggcgcacgccgccaccgctggacctccgcacacccaatcatcatcgaccaagccctctcttgtctcaacaagcaagaattccctctcaagctccagctcatcgcgaagacacccccgcccgagtatctcctgccgaatctgctgccgccgcctatcccttctcctctattccggttttcgccttctctgccatcaagcctcgctgagcctcctccactgcggtcgttaccgcagactgtgtcgtctgcctctcgaagttcgagcaggacgaccagctccggctacaccctctctgctgtcacgccttccacgtatcgtacatcgacgcgtggctctacccccaacagacctgcccactctgctggtcgccgatttccgcgtcctactccgagctcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.97

Weight (kDa)

10.68

Isoelectric Point (pI)

82.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 454
AccII CGCG 3 cut(s) 200, 424, 475
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 422
AhdI GACNNNNNGTC 1 cut(s) 67
AluBI AGCT 4 cut(s) 187, 193, 372, 489
AluI AGCT 4 cut(s) 187, 193, 372, 489
Alw21I GWGCWC 1 cut(s) 491
Alw26I GTCTC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 491
BbvI GCAGC 1 cut(s) 225
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BcoDI GTCTC 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 6 cut(s) 14, 97, 106, 239, 242, 245
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 6 cut(s) 15, 98, 107, 240, 243, 246
Bme18I GGWCC 1 cut(s) 117
BmeRI GACNNNNNGTC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 73
BmuI ACTGGG 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 167
BsaAI YACGTR 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 249, 297
BseXI GCAGC 1 cut(s) 225
Bsh1236I CGCG 3 cut(s) 200, 424, 475
Bsh1285I CGRYCG 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 491
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 268, 375
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 491
Bsp1720I GCTNAGC 1 cut(s) 300
Bsp68I TCGCGA 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 292
BspFNI CGCG 3 cut(s) 200, 424, 475
BspHI TCATGA 1 cut(s) 491
BspMI ACCTGC 1 cut(s) 454
BsrI ACTGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 300
BstFNI CGCG 3 cut(s) 200, 424, 475
BstHHI GCGC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 164
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 8 cut(s) 19, 102, 105, 111, 235, 244, 283, 455
BstUI CGCG 3 cut(s) 200, 424, 475
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 209
BstXI CCANNNNNNTGG 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 1 cut(s) 311
BtuMI TCGCGA 1 cut(s) 200
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 103
CciI TCATGA 1 cut(s) 491
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 2 cut(s) 430, 464
Csp6I GTAC 1 cut(s) 414
CviAII CATG 2 cut(s) 92, 492
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 1 cut(s) 300
DrdI GACNNNNNNGTC 1 cut(s) 337
DriI GACNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 337
Eam1105I GACNNNNNGTC 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 489
EcoRI GAATTC 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 491
FaeI CATG 2 cut(s) 95, 495
FaiI YATR 2 cut(s) 93, 493
FaqI GGGAC 1 cut(s) 10
FatI CATG 2 cut(s) 91, 491
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 6 cut(s) 14, 97, 106, 239, 242, 245
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 6 cut(s) 14, 97, 106, 239, 242, 245
GlaI GCGC 1 cut(s) 100
GluI GCNGC 6 cut(s) 14, 97, 106, 239, 242, 245
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 2 cut(s) 268, 375
HgaI GACGC 2 cut(s) 430, 464
HhaI GCGC 1 cut(s) 101
Hin1II CATG 2 cut(s) 95, 495
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 2 cut(s) 68, 232
HpaII CCGG 2 cut(s) 268, 375
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 3 cut(s) 199, 348, 492
Hpy99I CGWCG 2 cut(s) 83, 424
HpyAV CCTTC 3 cut(s) 264, 288, 411
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 8 cut(s) 19, 102, 105, 111, 235, 244, 283, 455
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 2 cut(s) 95, 495
HspAI GCGC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 192, 377
Lsp1109I GCAGC 1 cut(s) 225
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 3 cut(s) 49, 321, 394
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 1 cut(s) 173
MluI ACGCGT 1 cut(s) 422
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 9 cut(s) 130, 161, 189, 270, 305, 315, 318, 355, 395
MseI TTAA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 2 cut(s) 268, 375
MvnI CGCG 3 cut(s) 200, 424, 475
MwoI GCNNNNNNNGC 8 cut(s) 19, 102, 105, 111, 235, 244, 283, 455
NlaIII CATG 2 cut(s) 95, 495
NmuCI GTSAC 2 cut(s) 49, 394
NruI TCGCGA 1 cut(s) 200
PagI TCATGA 1 cut(s) 491
PcsI WCGNNNNNNNCGW 3 cut(s) 38, 362, 404
PfeI GAWTC 1 cut(s) 232
PflFI GACNNNGTC 1 cut(s) 334
PkrI GCNGC 6 cut(s) 15, 98, 107, 240, 243, 246
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 491
PspPI GGNCC 1 cut(s) 117
PsyI GACNNNGTC 1 cut(s) 334
RruI TCGCGA 1 cut(s) 200
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SacI GAGCTC 1 cut(s) 491
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 6 cut(s) 14, 97, 106, 239, 242, 245
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 491
SetI ASST 7 cut(s) 122, 189, 195, 374, 410, 448, 491
SinI GGWCC 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 173
SstI GAGCTC 1 cut(s) 491
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 410
TaqI TCGA 6 cut(s) 41, 78, 141, 349, 356, 419
TaqII GACCGA 1 cut(s) 20
TasI AATT 1 cut(s) 173
TauI GCSGC 5 cut(s) 16, 99, 108, 244, 247
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 2 cut(s) 49, 394
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 2 cut(s) 49, 394
TspRI CASTG 1 cut(s) 318
Tth111I GACNNNGTC 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.