Rh4AG118100

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
25467735 .. 25486240
18506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG118100.1

Sequence Viewer

Length: 942 bp
ATGCCAACCAGTTGGAGGGATTTGTATCGCTGTGAAAAGCTTGAAATTATTAGCCTTGCAATAAACAAGCTTAGCGGCCATATACCTGAAGAGTTGGCTTTCTTACCCAGACTTGAGCAACTATTTCTTGTTCACAATAATTTTTCTGGTGGAGTTCCACCAATTTTGGGTAACATTTCAACATTAGTAGTATTGGATATGTCCTATAACGGCCTTACTGGTTCACTTCCTTCTTCCCTGTTTAACCTGTCTTCTTTAGGTAATTTTTCTGTGCACCAAAATTTCCTTTCTGGAAGTTTTGTTGATGTTGATCTCTGCCGTTCTTGGCCTAGACTTCAATTCCTTTCTCTTACTCTCAATAATTTCAGTGGCCAGCTTCCTAACCTCAGCAATTGTACAGAGCTTGTCATATTGTCTTTATCACATAATAAGTTTGTGGGAAAAATTCCAGCAGATATTGGCAACTTCAAAAACCTTGAAGAACTTTATCTTGATTTTAATAGCCTCACTGGTACTATACCTCCTACTAACTTGTCCAGCTTGAAATCCTTGGGTTTACCGCAGAATAACGTTAAGGGAAGCATACCTCGTGATTTAGGACGTCTTTCTAGATTGGTCAAATTTTTGATTCGTAGGAATGGCCTAAGCGGACCAGTGCCTCCAGAAATATTCAATATCTCTTCTCTGCAAGTTATTGAAGCATGCGATAATGCCCTTTCAGGAAAGTTTCCTTCCTCTTCTGCAGTTCGGCTTCCTAGCACTGAATTCATCTCTTTTCCTCACAATAAAATTACTGGACATGTCCCATCCTATTTTGCAAATTTTACAAAGCTTTACTCACTTCAGGTTGGTAGTCATGACCTGGACACCTGTCCAGTTCCTTCCCTTCAGTCTCAGAAGGATCACTATATATGTACTAGAACCACCTCTTCCTTTGATTAA

Protein Analysis

313

Amino Acids

34.5

Weight (kDa)

7.67

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 604
AciI CCGC 3 cut(s) 75, 560, 648
AclI AACGTT 1 cut(s) 570
AclWI GGATC 1 cut(s) 909
AcoI YGGCCR 2 cut(s) 76, 370
AcsI RAATTY 5 cut(s) 280, 444, 620, 764, 820
AcuI CTGAAG 3 cut(s) 108, 827, 872
AcyI GRCGYC 1 cut(s) 601
AfaI GTAC 3 cut(s) 397, 514, 916
AfiI CCNNNNNNNGG 2 cut(s) 15, 167
AflIII ACRYGT 1 cut(s) 799
AgsI TTSAA 8 cut(s) 44, 180, 338, 469, 479, 544, 673, 698
AjnI CCWGG 1 cut(s) 861
AluBI AGCT 6 cut(s) 40, 70, 376, 403, 540, 832
AluI AGCT 6 cut(s) 40, 70, 376, 403, 540, 832
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 897
Alw44I GTGCAC 1 cut(s) 272
AlwI GGATC 1 cut(s) 909
AoxI GGCC 5 cut(s) 76, 211, 326, 370, 640
ApaLI GTGCAC 1 cut(s) 272
ApoI RAATTY 5 cut(s) 280, 444, 620, 764, 820
AspS9I GGNCC 1 cut(s) 650
AvaII GGWCC 1 cut(s) 650
BaeGI GKGCMC 1 cut(s) 276
BalI TGGCCA 1 cut(s) 372
BauI CACGAG 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 386
BccI CCATC 1 cut(s) 814
BceAI ACGGC 2 cut(s) 226, 303
BciT130I CCWGG 1 cut(s) 863
BcoDI GTCTC 1 cut(s) 897
BfaI CTAG 4 cut(s) 330, 609, 756, 918
BfmI CTRYAG 1 cut(s) 741
BisI GCNGC 1 cut(s) 76
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 863
Bme18I GGWCC 1 cut(s) 650
BmgT120I GGNCC 1 cut(s) 650
BmrFI CCNGG 1 cut(s) 863
BoxI GACNNNNGTC 1 cut(s) 870
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 2 cut(s) 386, 644
Bpu1102I GCTNAGC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 134
BsaBI GATNNNNATC 2 cut(s) 24, 309
BsaHI GRCGYC 1 cut(s) 601
BsaJI CCNNGG 1 cut(s) 549
BsaXI ACNNNNNCTCC 2 cut(s) 505, 535
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 167
Bse1I ACTGG 6 cut(s) 9, 223, 514, 653, 799, 875
Bse8I GATNNNNATC 2 cut(s) 24, 309
BseBI CCWGG 1 cut(s) 863
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 1 cut(s) 806
BseJI GATNNNNATC 2 cut(s) 24, 309
BseLI CCNNNNNNNGG 2 cut(s) 15, 167
BseMII CTCAG 2 cut(s) 400, 908
BseNI ACTGG 6 cut(s) 9, 223, 514, 653, 799, 875
BseSI GKGCMC 1 cut(s) 276
BshFI GGCC 5 cut(s) 78, 213, 328, 372, 642
BsiHKAI GWGCWC 1 cut(s) 276
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 2 cut(s) 15, 167
BsmAI GTCTC 1 cut(s) 897
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 5 cut(s) 78, 213, 328, 372, 642
Bsp1286I GDGCHC 1 cut(s) 276
Bsp1407I TGTACA 1 cut(s) 395
Bsp143I GATC 2 cut(s) 310, 901
Bsp1720I GCTNAGC 1 cut(s) 71
BspACI CCGC 3 cut(s) 75, 560, 648
BspANI GGCC 5 cut(s) 78, 213, 328, 372, 642
BspCNI CTCAG 2 cut(s) 399, 907
BspHI TCATGA 1 cut(s) 856
BspMAI CTGCAG 1 cut(s) 745
BspPI GGATC 1 cut(s) 909
BsrGI TGTACA 1 cut(s) 395
BsrI ACTGG 6 cut(s) 9, 223, 514, 653, 799, 875
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 2 cut(s) 310, 901
BssNI GRCGYC 1 cut(s) 601
BssSI CACGAG 1 cut(s) 588
BssT1I CCWWGG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 1 cut(s) 863
Bst6I CTCTTC 4 cut(s) 84, 685, 742, 934
BstACI GRCGYC 1 cut(s) 601
BstAUI TGTACA 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 374, 703
BstDEI CTNAG 4 cut(s) 71, 386, 644, 894
BstF5I GGATG 1 cut(s) 806
BstKTI GATC 2 cut(s) 313, 904
BstMAI GTCTC 1 cut(s) 897
BstMBI GATC 2 cut(s) 310, 901
BstNI CCWGG 1 cut(s) 863
BstNSI RCATGY 2 cut(s) 705, 803
BstPAI GACNNNNGTC 1 cut(s) 870
BstSCI CCNGG 1 cut(s) 861
BstSFI CTRYAG 1 cut(s) 741
BstSLI GKGCMC 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 12
BsuRI GGCC 5 cut(s) 78, 213, 328, 372, 642
BtsCI GGATG 1 cut(s) 806
BtsIMutI CAGTG 4 cut(s) 373, 507, 660, 759
Cac8I GCNNGC 2 cut(s) 374, 703
CciI TCATGA 1 cut(s) 856
Cfr13I GGNCC 1 cut(s) 650
Csp6I GTAC 3 cut(s) 396, 513, 915
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 3 cut(s) 702, 800, 857
CviQI GTAC 3 cut(s) 396, 513, 915
DdeI CTNAG 4 cut(s) 71, 386, 644, 894
DpnI GATC 2 cut(s) 312, 903
DpnII GATC 2 cut(s) 310, 901
EaeI YGGCCR 2 cut(s) 76, 370
Eam1104I CTCTTC 4 cut(s) 84, 685, 742, 934
EarI CTCTTC 4 cut(s) 84, 685, 742, 934
Eco130I CCWWGG 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 650
Eco57I CTGAAG 3 cut(s) 108, 827, 872
EcoRI GAATTC 1 cut(s) 764
EcoRII CCWGG 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 3 cut(s) 705, 803, 860
FaqI GGGAC 1 cut(s) 788
FatI CATG 3 cut(s) 701, 799, 856
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 1 cut(s) 793
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 4 cut(s) 330, 609, 756, 918
GluI GCNGC 1 cut(s) 76
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 5 cut(s) 78, 213, 328, 372, 642
Hin1I GRCGYC 1 cut(s) 601
Hin1II CATG 3 cut(s) 705, 803, 860
HindIII AAGCTT 3 cut(s) 38, 68, 830
HinfI GANTC 1 cut(s) 628
Hpy166II GTNNAC 4 cut(s) 133, 224, 274, 557
Hpy188I TCNGA 1 cut(s) 897
Hpy188III TCNNGA 7 cut(s) 291, 491, 590, 609, 662, 720, 857
Hpy8I GTNNAC 4 cut(s) 133, 224, 274, 557
HpyAV CCTTC 5 cut(s) 240, 741, 891, 892, 896
HpyCH4IV ACGT 2 cut(s) 570, 601
HpyCH4V TGCA 5 cut(s) 59, 274, 688, 743, 818
HpyF3I CTNAG 4 cut(s) 71, 386, 644, 894
HpySE526I ACGT 2 cut(s) 570, 601
Hsp92I GRCGYC 1 cut(s) 601
Hsp92II CATG 3 cut(s) 705, 803, 860
Kzo9I GATC 2 cut(s) 310, 901
MaeI CTAG 4 cut(s) 330, 609, 756, 918
MaeII ACGT 2 cut(s) 570, 601
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 312, 903
MboI GATC 2 cut(s) 310, 901
MboII GAAGA 7 cut(s) 101, 225, 243, 491, 672, 729, 921
MfeI CAATTG 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 276
MlsI TGGCCA 1 cut(s) 372
MluNI TGGCCA 1 cut(s) 372
MnlI CCTC 9 cut(s) 9, 395, 515, 531, 597, 669, 745, 789, 937
Mox20I TGGCCA 1 cut(s) 372
MscI TGGCCA 1 cut(s) 372
MseI TTAA 4 cut(s) 243, 498, 573, 940
Msp20I TGGCCA 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 863
MunI CAATTG 1 cut(s) 391
MvaI CCWGG 1 cut(s) 863
NdeII GATC 2 cut(s) 310, 901
NlaIII CATG 3 cut(s) 705, 803, 860
NspI RCATGY 2 cut(s) 705, 803
PaeI GCATGC 1 cut(s) 705
PagI TCATGA 1 cut(s) 856
PciI ACATGT 1 cut(s) 799
PfeI GAWTC 1 cut(s) 628
PkrI GCNGC 1 cut(s) 77
PscI ACATGT 1 cut(s) 799
PshAI GACNNNNGTC 1 cut(s) 870
Psp1406I AACGTT 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 861
PspGI CCWGG 1 cut(s) 861
PspPI GGNCC 1 cut(s) 650
PstI CTGCAG 1 cut(s) 745
RsaI GTAC 3 cut(s) 397, 514, 916
RsaNI GTAC 3 cut(s) 396, 513, 915
SaqAI TTAA 4 cut(s) 243, 498, 573, 940
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 2 cut(s) 310, 901
Sau96I GGNCC 1 cut(s) 650
ScrFI CCNGG 1 cut(s) 863
SduI GDGCHC 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 741
SinI GGWCC 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SphI GCATGC 1 cut(s) 705
SsiI CCGC 3 cut(s) 75, 560, 648
SspI AATATT 1 cut(s) 669
SspMI CTAG 4 cut(s) 330, 609, 756, 918
StyD4I CCNGG 1 cut(s) 861
StyI CCWWGG 1 cut(s) 549
TaiI ACGT 2 cut(s) 573, 604
TatI WGTACW 2 cut(s) 395, 914
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 4 cut(s) 243, 498, 573, 940
Tru9I TTAA 4 cut(s) 243, 498, 573, 940
TscAI CASTG 4 cut(s) 373, 514, 660, 766
TspDTI ATGAA 1 cut(s) 757
TspRI CASTG 4 cut(s) 373, 514, 660, 766
VneI GTGCAC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 650
XapI RAATTY 5 cut(s) 280, 444, 620, 764, 820
XbaI TCTAGA 1 cut(s) 608
XceI RCATGY 2 cut(s) 705, 803
XspI CTAG 4 cut(s) 330, 609, 756, 918
ZraI GACGTC 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.