Rroxscaffold_2G00130040

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
66151212 .. 66152657
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130040.1

Sequence Viewer

Length: 456 bp
ATGGCAGCACAAACCAACCTTAACATCACCACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCCCATATCACCAATGATCCTCAAAACATAGTCTTCACTAACTGGTCAACCACAACCCCTGTTTGTAACTGGGTTGGAGTCACTTGTGGTGCACGCCATCATCGAATCGCAGAGTTGAACGTATCTTACTTTGGTCTCACAGGCACCATTCCTCCGGAGCTAGGCAATTTATCTTTTCTTGTTGATCTGGATTTCAGAAATAATAGTTTTCATGGTACCTTGCCTCAAGAATTAGCTCACCTGCGTCGGTTGAAGTTTATAAACCTGACAAACAACAAGTTCATGGGAGTCATTCCATCATGGTGGTTTTTCAGCTCCGGATCAATGGAAATCTCTGGGGTGCGTGCGGTGCAGTCTGGTGGGTCTCGTGTGCAGATCGACGGCGTTGCAGATTGA

Protein Analysis

151

Amino Acids

16.62

Weight (kDa)

6.96

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 11 - 49 2e-11 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
AarI CACCTGC 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 309
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 203, 275
AccIII TCCGGA 2 cut(s) 214, 377
AciI CCGC 1 cut(s) 407
AclWI GGATC 2 cut(s) 71, 388
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 2 cut(s) 178, 313
AluBI AGCT 3 cut(s) 220, 296, 375
AluI AGCT 3 cut(s) 220, 296, 375
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 200, 429
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 2 cut(s) 71, 388
Aor13HI TCCGGA 2 cut(s) 214, 377
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 5
Asp718I GGTACC 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 19, 61, 290
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 2 cut(s) 203, 275
BauI CACGAG 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 165, 364
BcgI CGANNNNNNTGC 1 cut(s) 428
BcoDI GTCTC 2 cut(s) 200, 429
BfaI CTAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 309
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 205, 277
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 270
BsaI GGTCTC 2 cut(s) 200, 429
BsaWI WCCGGW 2 cut(s) 214, 377
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 3 cut(s) 37, 107, 134
BseAI TCCGGA 2 cut(s) 214, 377
BseLI CCNNNNNNNGG 1 cut(s) 221
BseNI ACTGG 3 cut(s) 37, 107, 134
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 2 cut(s) 431, 452
BshNI GGYRCC 2 cut(s) 203, 275
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 215, 378
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 2 cut(s) 200, 429
Bso31I GGTCTC 2 cut(s) 200, 429
Bsp1286I GDGCHC 1 cut(s) 154
Bsp13I TCCGGA 2 cut(s) 214, 377
Bsp143I GATC 4 cut(s) 76, 244, 380, 435
BspACI CCGC 1 cut(s) 407
BspEI TCCGGA 2 cut(s) 214, 377
BspLI GGNNCC 2 cut(s) 205, 277
BspMI ACCTGC 1 cut(s) 309
BspPI GGATC 2 cut(s) 71, 388
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 203, 275
BspTNI GGTCTC 2 cut(s) 200, 429
BsrI ACTGG 3 cut(s) 37, 107, 134
BssMI GATC 4 cut(s) 76, 244, 380, 435
BssSI CACGAG 1 cut(s) 426
Bst2BI CACGAG 1 cut(s) 426
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 154, 405
BstKTI GATC 4 cut(s) 79, 247, 383, 438
BstMAI GTCTC 2 cut(s) 200, 429
BstMBI GATC 4 cut(s) 76, 244, 380, 435
BstMWI GCNNNNNNNGC 3 cut(s) 50, 59, 409
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 363
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 154, 405
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 276
CviAII CATG 3 cut(s) 272, 343, 360
CviJI RGCY 4 cut(s) 62, 220, 296, 375
CviKI_1 RGCY 4 cut(s) 62, 220, 296, 375
CviQI GTAC 1 cut(s) 276
DpnI GATC 4 cut(s) 78, 246, 382, 437
DpnII GATC 4 cut(s) 76, 244, 380, 435
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco31I GGTCTC 2 cut(s) 200, 429
FaeI CATG 3 cut(s) 275, 346, 363
FaiI YATR 6 cut(s) 66, 89, 273, 320, 344, 361
FatI CATG 3 cut(s) 271, 342, 359
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 6
HapII CCGG 2 cut(s) 215, 378
HgaI GACGC 1 cut(s) 293
Hin1II CATG 3 cut(s) 275, 346, 363
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 3 cut(s) 138, 165, 348
HpaII CCGG 2 cut(s) 215, 378
HphI GGTGA 3 cut(s) 19, 61, 290
Hpy166II GTNNAC 2 cut(s) 108, 152
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 4 cut(s) 215, 248, 287, 378
Hpy8I GTNNAC 2 cut(s) 108, 152
Hpy99I CGWCG 2 cut(s) 309, 443
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 152, 412, 433, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 59, 409
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 3 cut(s) 275, 346, 363
Kpn2I TCCGGA 2 cut(s) 214, 377
KpnI GGTACC 1 cut(s) 279
Kzo9I GATC 4 cut(s) 76, 244, 380, 435
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 217, 380
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 125, 139
MalI GATC 4 cut(s) 78, 246, 382, 437
MboI GATC 4 cut(s) 76, 244, 380, 435
MboII GAAGA 2 cut(s) 38, 85
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 2 cut(s) 226, 290
MlyI GAGTC 2 cut(s) 147, 357
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 3 cut(s) 90, 222, 294
MroI TCCGGA 2 cut(s) 214, 377
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 361
MspI CCGG 2 cut(s) 215, 378
MwoI GCNNNNNNNGC 3 cut(s) 50, 59, 409
NdeII GATC 4 cut(s) 76, 244, 380, 435
NlaIII CATG 3 cut(s) 275, 346, 363
NlaIV GGNNCC 2 cut(s) 205, 277
NmuCI GTSAC 1 cut(s) 139
PaqCI CACCTGC 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 146, 356
PpsI GAGTC 2 cut(s) 146, 356
PsiI TTATAA 1 cut(s) 320
PspN4I GGNNCC 2 cut(s) 205, 277
PsrI GAACNNNNNNTAC 2 cut(s) 170, 202
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 76, 244, 380, 435
SchI GAGTC 2 cut(s) 147, 357
SduI GDGCHC 1 cut(s) 154
SetI ASST 8 cut(s) 21, 183, 222, 281, 298, 303, 327, 377
SmiMI CAYNNNNRTG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 2 cut(s) 226, 290
SsiI CCGC 1 cut(s) 407
SspMI CTAG 1 cut(s) 221
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 163, 438
TasI AATT 2 cut(s) 226, 290
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 260, 331
VneI GTGCAC 1 cut(s) 150
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.