Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000229

Physical Location & Seq

Genomic Coordinates Forward (+)

7357415 .. 7357969

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAGAGCACTTGGTTCTTCCTTGTCTACGCTTGTTGTATGGCGGCTAGCTGCTTAACTACAGCAGCACAAACCAACATTAGCACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCCCATATCACCAGTGACCCTCATAACTTGATCTTCACCAACTGGTCAACCAATACTCCCGTTTGCAACTGGGTTGGCGTTACCTGTGGTGCGCGCCACCTTAGAGCCACAGCCTTGAACCTCTCCTACTTTGGTCTCCAAGGCAGTATTCCTCCACAGCTAGGCAACCTATCATTTCTTGTTGATATTGACTTGAGAAATAACAGTTTCCAAGGTCCTTTGCCCCCAGAATTGGCTCGTTTGCGTCGATTGAAGTTCATTAGTTTCGGATTCAACAAATTTATGGGAATCATTCCGACATGGTTTGGGTCCTTATCCAAACTTCAAACCTTGTCTTTGTACGGTAATAAATTTTCAGGTTCCTTACCAAAGGCCATCTTCAACTTATCAGCACTTGAAGTAATTAGTTTGAGCTATAACCAGCTATCAGGTACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

184

Amino Acids

20.19

Weight (kDa)

9.12

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 67	1.7e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	77 - 178	5e-09	Leucine-rich repeat region
LRR_8	PF13855	122 - 180	6.2e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica	MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica	Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis	pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis	RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata	RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora	Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa	Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha	Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana	Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	545
AccB1I	GGYRCC	1 cut(s)	545
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	208
AciI	CCGC	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	392, 464
AfaI	GTAC	2 cut(s)	455, 547
AfiI	CCNNNNNNNGG	2 cut(s)	275, 346
AgsI	TTSAA	6 cut(s)	232, 367, 388, 440, 496, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	51, 274, 528, 538
AluI	AGCT	4 cut(s)	51, 274, 528, 538
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	2 cut(s)	51, 65
ApoI	RAATTY	2 cut(s)	392, 464
Asp718I	GGTACC	1 cut(s)	545
AspLEI	GCGC	2 cut(s)	208, 210
AspS9I	GGNCC	2 cut(s)	329, 423
AsuHPI	GGTGA	2 cut(s)	115, 142
AsuNHI	GCTAGC	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	329, 423
BanI	GGYRCC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	38, 77
BccI	CCATC	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	48, 275
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	3 cut(s)	45, 52, 66
BlsI	GCNGC	3 cut(s)	46, 53, 67
Bme18I	GGWCC	2 cut(s)	329, 423
BmgT120I	GGNCC	2 cut(s)	329, 423
BmiI	GGNNCC	3 cut(s)	424, 475, 547
BmrI	ACTGGG	1 cut(s)	193
BmtI	GCTAGC	1 cut(s)	51
BmuI	ACTGGG	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	253, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 346
Bse1I	ACTGG	4 cut(s)	91, 126, 161, 188
BseDI	CCNNGG	2 cut(s)	253, 325
BseLI	CCNNNNNNNGG	2 cut(s)	275, 346
BseNI	ACTGG	4 cut(s)	91, 126, 161, 188
BsePI	GCGCGC	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	38, 77
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	488
BshNI	GGYRCC	1 cut(s)	545
BsiHKAI	GWGCWC	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	275, 346
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	488
Bso31I	GGTCTC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	488
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	424, 475, 547
BspOI	GCTAGC	1 cut(s)	51
BspQI	GCTCTTC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	254
BsrI	ACTGG	4 cut(s)	91, 126, 161, 188
BssECI	CCNNGG	2 cut(s)	253, 325
BssHII	GCGCGC	1 cut(s)	206
BssMI	GATC	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	253, 325
Bst4CI	ACNGT	2 cut(s)	320, 458
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	49, 208
BstDEI	CTNAG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	208
BstHHI	GCGC	2 cut(s)	208, 210
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 113
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	38, 77
BsuRI	GGCC	1 cut(s)	488
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	49, 208
CfoI	GCGC	2 cut(s)	208, 210
Cfr13I	GGNCC	2 cut(s)	329, 423
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	454, 546
CviAII	CATG	1 cut(s)	414
CviQI	GTAC	2 cut(s)	454, 546
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	2 cut(s)	253, 325
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	329, 423
EcoO109I	RGGNCCY	2 cut(s)	329, 423
EcoT14I	CCWWGG	2 cut(s)	253, 325
ErhI	CCWWGG	2 cut(s)	253, 325
FaeI	CATG	1 cut(s)	417
FaiI	YATR	6 cut(s)	41, 120, 138, 398, 415, 531
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	1 cut(s)	413
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	45, 52, 66
Fsp4HI	GCNGC	3 cut(s)	45, 52, 66
FspBI	CTAG	2 cut(s)	48, 275
GlaI	GCGC	2 cut(s)	207, 209
GluI	GCNGC	3 cut(s)	45, 52, 66
HaeIII	GGCC	1 cut(s)	488
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	2 cut(s)	208, 210
Hin1II	CATG	1 cut(s)	417
Hin6I	GCGC	2 cut(s)	206, 208
HinP1I	GCGC	2 cut(s)	206, 208
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	384, 402
HphI	GGTGA	2 cut(s)	115, 142
Hpy166II	GTNNAC	2 cut(s)	28, 162
Hpy188I	TCNGA	2 cut(s)	383, 411
Hpy8I	GTNNAC	2 cut(s)	28, 162
Hpy99I	CGWCG	1 cut(s)	363
HpyCH4III	ACNGT	2 cut(s)	320, 458
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 113
HpyF3I	CTNAG	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	417
HspAI	GCGC	2 cut(s)	206, 208
KpnI	GGTACC	1 cut(s)	549
Kzo9I	GATC	1 cut(s)	144
LguI	GCTCTTC	1 cut(s)	105
LpnPI	CCDG	9 cut(s)	104, 139, 142, 169, 211, 354, 456, 528, 548
Lsp1109I	GCAGC	2 cut(s)	38, 77
MaeI	CTAG	2 cut(s)	48, 275
MaeIII	GTNAC	2 cut(s)	128, 193
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	4 cut(s)	10, 92, 139, 484
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	344, 392, 464, 516
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	3 cut(s)	144, 245, 276
MseI	TTAA	1 cut(s)	56
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	104, 113
NdeII	GATC	1 cut(s)	144
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	417
NlaIV	GGNNCC	3 cut(s)	424, 475, 547
NmuCI	GTSAC	1 cut(s)	128
PauI	GCGCGC	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	384, 402
PkrI	GCNGC	3 cut(s)	46, 53, 67
PpuMI	RGGWCCY	2 cut(s)	329, 423
Psp5II	RGGWCCY	2 cut(s)	329, 423
PspN4I	GGNNCC	3 cut(s)	424, 475, 547
PspPI	GGNCC	2 cut(s)	329, 423
PspPPI	RGGWCCY	2 cut(s)	329, 423
PsrI	GAACNNNNNNTAC	2 cut(s)	224, 256
PteI	GCGCGC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	455, 547
RsaNI	GTAC	2 cut(s)	454, 546
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	3 cut(s)	45, 52, 66
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	2 cut(s)	329, 423
SduI	GDGCHC	1 cut(s)	11
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	2 cut(s)	329, 423
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	4 cut(s)	344, 392, 464, 516
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	48, 275
StyI	CCWWGG	2 cut(s)	253, 325
TaaI	ACNGT	2 cut(s)	320, 458
TaqI	TCGA	1 cut(s)	361
TasI	AATT	4 cut(s)	344, 392, 464, 516
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	384, 402
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	51, 65
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	2 cut(s)	329, 423
XapI	RAATTY	2 cut(s)	392, 464
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	2 cut(s)	48, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.