RLG00000009062

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
45810238 .. 45810837
600 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009062

Sequence Viewer

Length: 600 bp
ATGGAAACAAGTCGATTTTTCCTCTTGCAAATAAGATTGTCGCTGGTGTACTACTGTTGCATTGCTAGCTTTGCTATAGCGGTAGCAGTACAAACCAGCGATATCTCCACAGATCAATCTGCTCTTCTTTCTCTTAAAGCCAGTATCACCAGTGACCCTCAAAACATGATATTCACCAACTGGTCCACCAAAACCTCCATTTGTAACTGGGCTGGGGTTACTTGTGGTGCAAGCCACCGCAGAGTCGAGGTCTTGGACCTTTCATACTTTGGTCTGGCAGGCACCATTCCAGATAATATCTGCCAGCATCTTCCTAATATTCAAGAATTGTATTTTGCTCACAACAAGTTTGATGGTCCACTTCCATCCACACTCTGGCAATGCAAACAGCTTCTTGTATTATCATTGGAGGGTAACAATTTCAGTGGAAGCATACACAAGAATATTGGGAACTTGACTCGCATAAAAAAGATTTATCTTGGCTACAACAATTTGACAGGTAACCACTCATGTAAACTTTACTCAACATTTAATTATAGTGCTCCTCTCATGAACTCTATAACTATATTGAAATATAGAACTACTGGTCTACAACTGTGA

Protein Analysis

200

Amino Acids

22.22

Weight (kDa)

8.84

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 36 - 75 1.3e-10 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AccB7I CCANNNNNTGG 1 cut(s) 375
AccI GTMKAC 1 cut(s) 589
AciI CCGC 2 cut(s) 80, 238
AfaI GTAC 2 cut(s) 50, 90
AfiI CCNNNNNNNGG 1 cut(s) 375
AgsI TTSAA 2 cut(s) 323, 571
AluBI AGCT 2 cut(s) 69, 391
AluI AGCT 2 cut(s) 69, 391
Alw21I GWGCWC 1 cut(s) 544
AspS9I GGNCC 3 cut(s) 183, 256, 356
AsuHPI GGTGA 2 cut(s) 139, 166
AsuNHI GCTAGC 1 cut(s) 65
AvaII GGWCC 3 cut(s) 183, 256, 356
BanI GGYRCC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 544
BccI CCATC 2 cut(s) 347, 373
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 75
Bme18I GGWCC 3 cut(s) 183, 256, 356
BmgT120I GGNCC 3 cut(s) 183, 256, 356
BmiI GGNNCC 1 cut(s) 283
BmrI ACTGGG 1 cut(s) 217
BmsI GCATC 1 cut(s) 316
BmtI GCTAGC 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse1I ACTGG 5 cut(s) 141, 150, 185, 212, 589
Bse3DI GCAATG 2 cut(s) 60, 386
BseGI GGATG 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMI GCAATG 2 cut(s) 60, 386
BseNI ACTGG 5 cut(s) 141, 150, 185, 212, 589
BseRI GAGGAG 1 cut(s) 534
BseYI CCCAGC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 544
BslI CCNNNNNNNGG 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 544
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 2 cut(s) 80, 238
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 283
BspOI GCTAGC 1 cut(s) 69
BspQI GCTCTTC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 60, 386
BsrI ACTGG 5 cut(s) 141, 150, 185, 212, 589
BssMI GATC 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 56, 597
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 67, 232, 280, 305
BstEII GGTNACC 1 cut(s) 500
BstF5I GGATG 1 cut(s) 365
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 66, 71
BstPI GGTNACC 1 cut(s) 500
BstSFI CTRYAG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 365
BtsIMutI CAGTG 2 cut(s) 157, 430
Cac8I GCNNGC 4 cut(s) 67, 232, 280, 305
CciI TCATGA 1 cut(s) 549
Cfr13I GGNCC 3 cut(s) 183, 256, 356
Csp6I GTAC 2 cut(s) 49, 89
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 3 cut(s) 166, 510, 550
CviJI RGCY 6 cut(s) 69, 140, 212, 234, 391, 483
CviKI_1 RGCY 6 cut(s) 69, 140, 212, 234, 391, 483
CviQI GTAC 2 cut(s) 49, 89
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 3 cut(s) 183, 256, 356
Eco91I GGTNACC 1 cut(s) 500
EcoO65I GGTNACC 1 cut(s) 500
EcoRV GATATC 1 cut(s) 103
FaeI CATG 3 cut(s) 169, 513, 553
FatI CATG 3 cut(s) 165, 509, 549
FblI GTMKAC 1 cut(s) 589
FokI GGATG 1 cut(s) 352
FspBI CTAG 1 cut(s) 66
GsaI CCCAGC 1 cut(s) 216
Hin1II CATG 3 cut(s) 169, 513, 553
HinfI GANTC 2 cut(s) 243, 457
HphI GGTGA 2 cut(s) 139, 166
Hpy166II GTNNAC 5 cut(s) 49, 186, 359, 515, 590
Hpy188III TCNNGA 3 cut(s) 290, 323, 550
Hpy8I GTNNAC 5 cut(s) 49, 186, 359, 515, 590
HpyCH4III ACNGT 2 cut(s) 56, 597
HpyCH4V TGCA 4 cut(s) 28, 60, 230, 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 71
Hsp92II CATG 3 cut(s) 169, 513, 553
Kzo9I GATC 1 cut(s) 112
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 547
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 5 cut(s) 152, 203, 217, 413, 500
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 2 cut(s) 116, 302
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 4 cut(s) 326, 418, 490, 532
MlyI GAGTC 2 cut(s) 252, 451
MnlI CCTC 6 cut(s) 32, 168, 205, 241, 403, 555
MseI TTAA 2 cut(s) 135, 531
MwoI GCNNNNNNNGC 2 cut(s) 66, 71
NdeII GATC 1 cut(s) 112
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 3 cut(s) 169, 513, 553
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 152
PagI TCATGA 1 cut(s) 549
PciSI GCTCTTC 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 375
PleI GAGTC 2 cut(s) 251, 451
PpsI GAGTC 2 cut(s) 251, 451
PspEI GGTNACC 1 cut(s) 500
PspFI CCCAGC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 3 cut(s) 183, 256, 356
RsaI GTAC 2 cut(s) 50, 90
RsaNI GTAC 2 cut(s) 49, 89
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 135, 531
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 3 cut(s) 183, 256, 356
SchI GAGTC 2 cut(s) 252, 451
SduI GDGCHC 1 cut(s) 544
SetI ASST 6 cut(s) 71, 197, 252, 261, 393, 502
SfaNI GCATC 1 cut(s) 316
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 3 cut(s) 183, 256, 356
Sse9I AATT 4 cut(s) 326, 418, 490, 532
SsiI CCGC 2 cut(s) 80, 238
SspI AATATT 2 cut(s) 319, 445
SspMI CTAG 1 cut(s) 66
TaaI ACNGT 2 cut(s) 56, 597
TaqI TCGA 2 cut(s) 13, 246
TasI AATT 4 cut(s) 326, 418, 490, 532
TatI WGTACW 2 cut(s) 48, 88
Tru1I TTAA 2 cut(s) 135, 531
Tru9I TTAA 2 cut(s) 135, 531
TscAI CASTG 2 cut(s) 157, 430
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 252, 566
TspRI CASTG 2 cut(s) 157, 430
Van91I CCANNNNNTGG 1 cut(s) 375
VpaK11BI GGWCC 3 cut(s) 183, 256, 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 589
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.