Rh4AG118300

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
25539647 .. 25546772
7126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG118300.1

Sequence Viewer

Length: 999 bp
ATGCCCTGCTCAGATGCTTCTGAAGCTGCTCGTCCAAGCTCTTCAGATCTATCTGGTGAAATTCCTTCGTCTCTGGGTAACATTTCAACCTTACAAGAATTAAGTCTGGTCGAAAATGGTCTCACAGGTTCATTCCCTTCTGCTCTACTCAACGTATCTACTCTAGCTCTTATTTCCCTATCTGGCAATTACATATCAGGTAGTCTTCCTGTAGATCTTTGCCGTAATTGGCCTAATACTTATTACATTTCTCTATCTGACAACAAATTCGGTGGCCAACTGACTTTCGGAATAAGCCAATGTAGAGAGCTTGAGATCTTATCTCTGTCATACAATAATTTTGTTGGAAGTATTCCGGGAGAAATTGGGAGTTTACAACATCTTAAAACTCTATTTCTTGGTGTCAATAACCTAACTGGTGCTATACCTCCAACAATAGGTAACCTGTCAAACTTGCAGTTCTTTACTGTGCCAGATAATAATTTAGAGGGAAGTATTCCAAGTGATTTGGGGCATCTTTCTAAACTAAATTATCTCTCTTTTGCTCGGAATAGCCTAACAGGTGAAATACCTGAGTCCATTTTCAATATCTCCTCCTTAAATACTTTACAAGTACAAACTAATGCTCTTTCTGGAGAATTTCCTTCTCGAGCTATGATTTCTAACCTCAATACCCTATACTGTTATACCAATCACATTACGGGAAATCTACCATCCTATTTTTCAAATTTAAGCCAGCTTGTTGAGCTTGATGTTTCCAACAACTCACTTTATGGACCAATACCCATGAACCTTGGTAGCTCAAAATACCTCGAATTCCTTAACTTGGGAGGAAATCAGTTGTCAGGGCAACCTGGAGTTCCTGTACTTAGGAAAGAGTTGGATGAGAGACGCAAGTGCACTGACCTGACTAACAGGTTGGTGAATCTCCAAAGCCTGTTTAAATCTCCCAGGGGCACCAAGGTTCCTGCAATAACCACACTAAAGCATGAAAATTAG

Protein Analysis

332

Amino Acids

35.86

Weight (kDa)

5.26

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 102 - 162 1.7e-06 Leucine rich repeat
LRR_14 PF23598 102 - 181 1.2e-07 Leucine-rich repeat region
LRR_14 PF23598 168 - 275 5e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 956
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 5 cut(s) 60, 266, 638, 727, 815
AcuI CTGAAG 2 cut(s) 27, 42
AfaI GTAC 2 cut(s) 615, 867
AfiI CCNNNNNNNGG 2 cut(s) 437, 826
AgsI TTSAA 3 cut(s) 87, 586, 726
AjnI CCWGG 2 cut(s) 853, 950
AluBI AGCT 8 cut(s) 26, 39, 167, 310, 653, 739, 748, 801
AluI AGCT 8 cut(s) 26, 39, 167, 310, 653, 739, 748, 801
Alw21I GWGCWC 1 cut(s) 902
Alw26I GTCTC 3 cut(s) 75, 125, 883
Alw44I GTGCAC 1 cut(s) 898
Ama87I CYCGRG 1 cut(s) 648
AoxI GGCC 2 cut(s) 230, 274
ApaLI GTGCAC 1 cut(s) 898
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 5 cut(s) 60, 266, 638, 727, 815
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 3 cut(s) 68, 575, 934
AvaI CYCGRG 1 cut(s) 648
AvaII GGWCC 1 cut(s) 776
BaeGI GKGCMC 2 cut(s) 902, 959
BalI TGGCCA 1 cut(s) 276
BanI GGYRCC 1 cut(s) 956
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 902
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 721
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 2 cut(s) 855, 952
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 3 cut(s) 75, 125, 883
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 210
BglII AGATCT 3 cut(s) 46, 214, 315
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 3 cut(s) 357, 855, 952
Bme18I GGWCC 1 cut(s) 776
BmeT110I CYCGRG 1 cut(s) 648
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 2 cut(s) 958, 966
BmrFI CCNGG 3 cut(s) 357, 855, 952
BmsI GCATC 2 cut(s) 4, 523
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 2 cut(s) 654, 876
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 4 cut(s) 793, 950, 951, 960
BsaXI ACNNNNNCTCC 2 cut(s) 849, 879
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 826
Bse1I ACTGG 1 cut(s) 421
BseBI CCWGG 2 cut(s) 855, 952
BseDI CCNNGG 4 cut(s) 793, 950, 951, 960
BseGI GGATG 2 cut(s) 713, 889
BseLI CCNNNNNNNGG 2 cut(s) 437, 826
BseMII CTCAG 2 cut(s) 24, 564
BseNI ACTGG 1 cut(s) 421
BseRI GAGGAG 1 cut(s) 583
BseSI GKGCMC 2 cut(s) 902, 959
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 2 cut(s) 232, 276
BshNI GGYRCC 1 cut(s) 956
BsiHKAI GWGCWC 1 cut(s) 902
BsiHKCI CYCGRG 1 cut(s) 648
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 437, 826
BsmAI GTCTC 3 cut(s) 75, 125, 883
BsmBI CGTCTC 2 cut(s) 75, 883
BsnI GGCC 2 cut(s) 232, 276
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 902, 959
Bsp143I GATC 3 cut(s) 46, 214, 315
BspANI GGCC 2 cut(s) 232, 276
BspCNI CTCAG 2 cut(s) 23, 565
BspLI GGNNCC 2 cut(s) 958, 966
BspQI GCTCTTC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 956
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 421
BssECI CCNNGG 4 cut(s) 793, 950, 951, 960
BssMI GATC 3 cut(s) 46, 214, 315
BssT1I CCWWGG 2 cut(s) 793, 960
Bst2UI CCWGG 2 cut(s) 855, 952
Bst4CI ACNGT 2 cut(s) 469, 683
Bst6I CTCTTC 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 3 cut(s) 10, 573, 869
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 2 cut(s) 713, 889
BstKTI GATC 3 cut(s) 49, 217, 318
BstMAI GTCTC 3 cut(s) 75, 125, 883
BstMBI GATC 3 cut(s) 46, 214, 315
BstMWI GCNNNNNNNGC 2 cut(s) 23, 745
BstNI CCWGG 2 cut(s) 855, 952
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 3 cut(s) 355, 853, 950
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 2 cut(s) 902, 959
BstV1I GCAGC 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 3 cut(s) 46, 214, 315
BstYI RGATCY 3 cut(s) 46, 214, 315
BsuRI GGCC 2 cut(s) 232, 276
BtsCI GGATG 2 cut(s) 713, 889
BtsIMutI CAGTG 1 cut(s) 900
Cac8I GCNNGC 1 cut(s) 737
Cfr13I GGNCC 1 cut(s) 776
CseI GACGC 1 cut(s) 900
Csp6I GTAC 2 cut(s) 614, 866
CspCI CAANNNNNGTGG 2 cut(s) 253, 288
CviAII CATG 2 cut(s) 787, 989
CviQI GTAC 2 cut(s) 614, 866
DdeI CTNAG 3 cut(s) 10, 573, 869
DpnI GATC 3 cut(s) 48, 216, 317
DpnII GATC 3 cut(s) 46, 214, 315
DraI TTTAAA 1 cut(s) 943
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 793, 960
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 776
Eco57I CTGAAG 2 cut(s) 27, 42
Eco88I CYCGRG 1 cut(s) 648
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 853, 950
EcoT14I CCWWGG 2 cut(s) 793, 960
ErhI CCWWGG 2 cut(s) 793, 960
Esp3I CGTCTC 2 cut(s) 75, 883
FaeI CATG 2 cut(s) 790, 992
FaiI YATR 9 cut(s) 194, 331, 425, 656, 679, 687, 774, 788, 990
FatI CATG 2 cut(s) 786, 988
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 700, 896
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 2 cut(s) 654, 876
HaeIII GGCC 2 cut(s) 232, 276
HapII CCGG 1 cut(s) 356
HgaI GACGC 1 cut(s) 900
Hin1II CATG 2 cut(s) 790, 992
HinfI GANTC 2 cut(s) 575, 925
HpaII CCGG 1 cut(s) 356
HphI GGTGA 3 cut(s) 68, 575, 934
Hpy166II GTNNAC 2 cut(s) 374, 900
Hpy188I TCNGA 6 cut(s) 13, 22, 46, 259, 290, 549
Hpy188III TCNNGA 2 cut(s) 633, 648
Hpy8I GTNNAC 2 cut(s) 374, 900
HpyAV CCTTC 3 cut(s) 75, 147, 654
HpyCH4III ACNGT 2 cut(s) 469, 683
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 457, 900, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 745
HpyF3I CTNAG 3 cut(s) 10, 573, 869
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 790, 992
Kzo9I GATC 3 cut(s) 46, 214, 315
LguI GCTCTTC 1 cut(s) 46
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 2 cut(s) 4, 523
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 77, 440
MalI GATC 3 cut(s) 48, 216, 317
MboI GATC 3 cut(s) 46, 214, 315
MboII GAAGA 2 cut(s) 33, 197
MflI RGATCY 3 cut(s) 46, 214, 315
MhlI GDGCHC 2 cut(s) 902, 959
MlsI TGGCCA 1 cut(s) 276
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 4 cut(s) 325, 455, 783, 861
MnlI CCTC 6 cut(s) 438, 481, 604, 677, 821, 824
Mox20I TGGCCA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 276
MseI TTAA 6 cut(s) 101, 384, 599, 731, 822, 942
Msp20I TGGCCA 1 cut(s) 276
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 3 cut(s) 357, 855, 952
MvaI CCWGG 2 cut(s) 855, 952
MwoI GCNNNNNNNGC 2 cut(s) 23, 745
NciI CCSGG 1 cut(s) 357
NdeII GATC 3 cut(s) 46, 214, 315
NlaIII CATG 2 cut(s) 790, 992
NlaIV GGNNCC 2 cut(s) 958, 966
PaeR7I CTCGAG 1 cut(s) 648
PasI CCCWGGG 1 cut(s) 951
PciSI GCTCTTC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 925
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
Psp6I CCWGG 2 cut(s) 853, 950
PspEI GGTNACC 1 cut(s) 440
PspGI CCWGG 2 cut(s) 853, 950
PspN4I GGNNCC 2 cut(s) 958, 966
PspPI GGNCC 1 cut(s) 776
PsuI RGATCY 3 cut(s) 46, 214, 315
RsaI GTAC 2 cut(s) 615, 867
RsaNI GTAC 2 cut(s) 614, 866
SapI GCTCTTC 1 cut(s) 46
SaqAI TTAA 6 cut(s) 101, 384, 599, 731, 822, 942
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 3 cut(s) 46, 214, 315
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 3 cut(s) 357, 855, 952
SduI GDGCHC 2 cut(s) 902, 959
SfaNI GCATC 2 cut(s) 4, 523
SfcI CTRYAG 1 cut(s) 210
Sfr274I CTCGAG 1 cut(s) 648
SinI GGWCC 1 cut(s) 776
SlaI CTCGAG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 311, 648
SmoI CTYRAG 2 cut(s) 311, 648
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 3 cut(s) 355, 853, 950
StyI CCWWGG 2 cut(s) 793, 960
TaaI ACNGT 2 cut(s) 469, 683
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 111, 649, 813
TatI WGTACW 2 cut(s) 613, 865
TfiI GAWTC 1 cut(s) 925
Tru1I TTAA 6 cut(s) 101, 384, 599, 731, 822, 942
Tru9I TTAA 6 cut(s) 101, 384, 599, 731, 822, 942
TscAI CASTG 1 cut(s) 907
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 120, 803
TspRI CASTG 1 cut(s) 907
VneI GTGCAC 1 cut(s) 898
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 5 cut(s) 60, 266, 638, 727, 815
XhoI CTCGAG 1 cut(s) 648
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.