pycom808g00140

calcium-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000808
Physical Location & Seq
Forward (+)
50490 .. 51425
936 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGTGTTTGTTCTATGACAATCAAGTTGCTATGCACATTACTTCCAATCTAGTTTTTCACGAGAGGACTAAACATATTGAGGTTGACTTTCATTACATTCGAGCACAAGTTCAATCGAAGGTTATTAACACTCATTACAAATGCAGTCACGACAAGTTGGCTGATATTTTTACGAAATACCTTCCTACTGCTCAATTTCAGCATTTATTATTCAAGGTTGGCTCAAAGAACCCCTTAATCCATCCAACTAGAGCAAATAAAAAAAATTATACCTTTTTTAGTGTTAGTTGTTGGAAATGTGCTAAACTAATCTTGTTTAATATAAATGGCAAAGATTGTTTTTTAAAGCCATCTCATATAAATGTTATATGCTTAAACGATAAGTCCAAGGAATATGAGACCATTCTCTTTTGTATACATATCCTAAACTTTCCTGATCATAGGATTGCCAATTGGAGAGTGACTGGTCTCAAGTCATTGGTAATAAGTCCATTGAACGCGATCAACAAGGAGTTCTCATACTCATGTCACATGAAAACTCATGGTTGGGATAATGCAAATGAGTCATTTGACCTGAGGCATCATAGTTGTTTTATGGTTAGGTCCCTGATCTTTGACTATGTTAAAGGGTTGAATGCACAACAAGGGATCTCTAACCTTCAAACCATTTGA
Functional Annotation

Protein Analysis

224

Amino Acids

26.02

Weight (kDa)

9.18

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 415
AccII CGCG 1 cut(s) 500
AclWI GGATC 1 cut(s) 656
AgsI TTSAA 5 cut(s) 113, 214, 496, 634, 662
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 2 cut(s) 392, 473
AlwI GGATC 1 cut(s) 656
AspS9I GGNCC 1 cut(s) 603
AvaII GGWCC 1 cut(s) 603
AxyI CCTNAGG 1 cut(s) 575
BauI CACGAG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 106
BccI CCATC 2 cut(s) 249, 358
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 2 cut(s) 392, 473
BfaI CTAG 2 cut(s) 50, 249
Bme18I GGWCC 1 cut(s) 603
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 1 cut(s) 605
BmsI GCATC 1 cut(s) 589
BpuEI CTTGAG 1 cut(s) 455
BsaI GGTCTC 2 cut(s) 392, 473
BsaJI CCNNGG 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 469
Bse21I CCTNAGG 1 cut(s) 575
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 566
BseNI ACTGG 1 cut(s) 469
Bsh1236I CGCG 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 106
BslFI GGGAC 1 cut(s) 589
BsmAI GTCTC 2 cut(s) 392, 473
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 1 cut(s) 640
Bso31I GGTCTC 2 cut(s) 392, 473
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 4 cut(s) 436, 501, 609, 648
BspCNI CTCAG 1 cut(s) 567
BspFNI CGCG 1 cut(s) 500
BspLI GGNNCC 1 cut(s) 605
BspPI GGATC 1 cut(s) 656
BspTNI GGTCTC 2 cut(s) 392, 473
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 4 cut(s) 436, 501, 609, 648
BssNAI GTATAC 1 cut(s) 416
BssSI CACGAG 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 387
Bst1107I GTATAC 1 cut(s) 416
Bst2BI CACGAG 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 575
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 1 cut(s) 500
BstKTI GATC 4 cut(s) 439, 504, 612, 651
BstMAI GTCTC 2 cut(s) 392, 473
BstMBI GATC 4 cut(s) 436, 501, 609, 648
BstUI CGCG 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 648
BstYI RGATCY 1 cut(s) 648
BstZ17I GTATAC 1 cut(s) 416
Bsu36I CCTNAGG 1 cut(s) 575
BtsCI GGATG 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 603
CviAII CATG 3 cut(s) 525, 532, 542
CviJI RGCY 3 cut(s) 161, 222, 349
CviKI_1 RGCY 3 cut(s) 161, 222, 349
DdeI CTNAG 1 cut(s) 575
DpnI GATC 4 cut(s) 438, 503, 611, 650
DpnII GATC 4 cut(s) 436, 501, 609, 648
DraI TTTAAA 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 387
Eco31I GGTCTC 2 cut(s) 392, 473
Eco47I GGWCC 1 cut(s) 603
Eco81I CCTNAGG 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 603
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 3 cut(s) 528, 535, 545
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 589
FatI CATG 3 cut(s) 524, 531, 541
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 1 cut(s) 415
FokI GGATG 1 cut(s) 228
FspBI CTAG 2 cut(s) 50, 249
Hin1II CATG 3 cut(s) 528, 535, 545
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 1 cut(s) 563
Hpy166II GTNNAC 2 cut(s) 85, 416
Hpy188III TCNNGA 3 cut(s) 59, 149, 434
Hpy8I GTNNAC 2 cut(s) 85, 416
HpyAV CCTTC 3 cut(s) 112, 191, 668
HpyCH4V TGCA 4 cut(s) 34, 144, 557, 638
HpyF3I CTNAG 1 cut(s) 575
Hsp92II CATG 3 cut(s) 528, 535, 545
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 4 cut(s) 436, 501, 609, 648
LpnPI CCDG 4 cut(s) 447, 450, 587, 620
LweI GCATC 1 cut(s) 589
MaeI CTAG 2 cut(s) 50, 249
MaeIII GTNAC 3 cut(s) 146, 460, 527
MalI GATC 4 cut(s) 438, 503, 611, 650
MboI GATC 4 cut(s) 436, 501, 609, 648
MfeI CAATTG 1 cut(s) 451
MflI RGATCY 1 cut(s) 648
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 3 cut(s) 194, 265, 451
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 2 cut(s) 269, 272
MnlI CCTC 3 cut(s) 57, 73, 570
MseI TTAA 6 cut(s) 126, 236, 318, 344, 374, 624
MslI CAYNNNNRTG 2 cut(s) 360, 523
MunI CAATTG 1 cut(s) 451
Mva1269I GAATGC 1 cut(s) 640
MvnI CGCG 1 cut(s) 500
NdeII GATC 4 cut(s) 436, 501, 609, 648
NlaIII CATG 3 cut(s) 528, 535, 545
NlaIV GGNNCC 1 cut(s) 605
NmuCI GTSAC 3 cut(s) 146, 460, 527
PctI GAATGC 1 cut(s) 640
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
PpuMI RGGWCCY 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 603
PspN4I GGNNCC 1 cut(s) 605
PspPI GGNCC 1 cut(s) 603
PspPPI RGGWCCY 1 cut(s) 603
PsuI RGATCY 1 cut(s) 648
RseI CAYNNNNRTG 2 cut(s) 360, 523
SaqAI TTAA 6 cut(s) 126, 236, 318, 344, 374, 624
Sau3AI GATC 4 cut(s) 436, 501, 609, 648
Sau96I GGNCC 1 cut(s) 603
SchI GAGTC 1 cut(s) 572
SduI GDGCHC 1 cut(s) 106
SetI ASST 8 cut(s) 84, 123, 183, 219, 275, 576, 605, 660
SfaNI GCATC 1 cut(s) 589
SinI GGWCC 1 cut(s) 603
SmiMI CAYNNNNRTG 2 cut(s) 360, 523
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 3 cut(s) 194, 265, 451
SspMI CTAG 2 cut(s) 50, 249
StyI CCWWGG 1 cut(s) 387
TaqI TCGA 2 cut(s) 100, 116
TasI AATT 3 cut(s) 194, 265, 451
Tru1I TTAA 6 cut(s) 126, 236, 318, 344, 374, 624
Tru9I TTAA 6 cut(s) 126, 236, 318, 344, 374, 624
TseFI GTSAC 3 cut(s) 146, 460, 527
Tsp45I GTSAC 3 cut(s) 146, 460, 527
TspDTI ATGAA 2 cut(s) 80, 548
VpaK11BI GGWCC 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 415
XspI CTAG 2 cut(s) 50, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.