FvH4_1g15681

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000095
Physical Location & Seq
Reverse (-)
8902868 .. 8904522
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15681.t1

Sequence Viewer

Length: 651 bp
ATGAGTCCATCAACTGCATTCAAGTACTTGGTCATACAGCGATGTAACAATCTTACAAGAATTCAGATTTCTGATGCAAATCTTGTTTCATTCGTTAATGAGGCAGATGGGTTGCAGTCTAATAAGGTAGATTTGCATCTTAAGAATCTACCGCTTCTTGTTGAGGTATCTCTTGGTGGAAGACGTTCAATTGATTTCTTAGAAGTTGCCTTCCAAATCTGTTGCTGTCTTGCACAATTAGAGGTTCTCAAACTGAATGAGTTCAGCATGATCTACAGAAGGGAGTCTGTATTTCCTACACTATGTAATCTCAAGCATTTGGAATTACCATTGCATGAAGATGATGATAGCGCTCTTCTGCAACTATCTTCCTTCATGAAGGCAGCTCCGTTATTGCATACACTTGTGTTGCAGTTACGCTATTCAATGAGAAGGAAAGGACCCTTTCCCAATAAGAAAGCTGCCAAGTGCTTGCATAACAACCTCAAGGTGGTGGAAATTGTCATGTTAACCTCCTTGTGTGCTGAGACTTCTATGCCATTTCAAGGATTAGCATTGTGTGTAGACTTGCGCAGGCGGTTGTTAATGTCTCATCTTCGAATGGAGAAGAGGACTGGAATTTTACCTCAATGGAGGGAAGGAACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

217

Amino Acids

24.64

Weight (kDa)

8.95

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 6 - 172 5.5e-11 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 572
AccI GTMKAC 1 cut(s) 564
AciI CCGC 2 cut(s) 152, 577
AcsI RAATTY 2 cut(s) 60, 618
AfaI GTAC 1 cut(s) 26
AfeI AGCGCT 1 cut(s) 352
AfiI CCNNNNNNNGG 2 cut(s) 490, 545
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 4 cut(s) 22, 189, 426, 545
AluBI AGCT 2 cut(s) 386, 461
AluI AGCT 2 cut(s) 386, 461
Alw26I GTCTC 2 cut(s) 521, 594
Aor51HI AGCGCT 1 cut(s) 352
ApeKI GCWGC 2 cut(s) 383, 461
ApoI RAATTY 2 cut(s) 60, 618
Asp700I GAANNNNTTC 2 cut(s) 184, 260
AspLEI GCGC 2 cut(s) 353, 573
AspS9I GGNCC 1 cut(s) 440
AsuII TTCGAA 1 cut(s) 598
AvaII GGWCC 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 395, 448
BccI CCATC 2 cut(s) 16, 101
BcoDI GTCTC 2 cut(s) 521, 594
BfmI CTRYAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 354
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 384, 462
BlsI GCNGC 2 cut(s) 385, 463
BmcAI AGTACT 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 1 cut(s) 442
BmsI GCATC 2 cut(s) 64, 145
BpiI GAAGAC 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 598
BpuEI CTTGAG 2 cut(s) 296, 470
BsaBI GATNNNNATC 2 cut(s) 78, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 490, 545
Bse1I ACTGG 1 cut(s) 619
Bse3DI GCAATG 1 cut(s) 329
Bse8I GATNNNNATC 2 cut(s) 78, 135
BseJI GATNNNNATC 2 cut(s) 78, 135
BseLI CCNNNNNNNGG 2 cut(s) 490, 545
BseMI GCAATG 1 cut(s) 329
BseMII CTCAG 2 cut(s) 516, 636
BseNI ACTGG 1 cut(s) 619
BseXI GCAGC 2 cut(s) 395, 448
BslI CCNNNNNNNGG 2 cut(s) 490, 545
BsmAI GTCTC 2 cut(s) 521, 594
BsmI GAATGC 1 cut(s) 17
Bsp119I TTCGAA 1 cut(s) 598
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 2 cut(s) 152, 577
BspCNI CTCAG 2 cut(s) 517, 637
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 442
BspQI GCTCTTC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 598
BspTI CTTAAG 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 329
BsrI ACTGG 1 cut(s) 619
BssMI GATC 1 cut(s) 270
Bst6I CTCTTC 2 cut(s) 360, 602
BstAFI CTTAAG 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 598
BstC8I GCNNGC 2 cut(s) 473, 575
BstDEI CTNAG 3 cut(s) 199, 525, 645
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 2 cut(s) 353, 573
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 2 cut(s) 521, 594
BstMBI GATC 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 395, 448
BstV2I GAAGAC 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 473, 575
CciI TCATGA 1 cut(s) 375
CfoI GCGC 2 cut(s) 353, 573
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 25
CviAII CATG 4 cut(s) 268, 335, 376, 505
CviJI RGCY 2 cut(s) 386, 461
CviKI_1 RGCY 2 cut(s) 386, 461
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 3 cut(s) 199, 525, 645
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 360, 602
EarI CTCTTC 2 cut(s) 360, 602
Eco47I GGWCC 1 cut(s) 440
Eco47III AGCGCT 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 60
FaeI CATG 4 cut(s) 271, 338, 379, 508
FaiI YATR 9 cut(s) 35, 269, 304, 336, 377, 399, 477, 506, 536
FatI CATG 4 cut(s) 267, 334, 375, 504
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 2 cut(s) 384, 462
Fsp4HI GCNGC 2 cut(s) 384, 462
FspI TGCGCA 1 cut(s) 572
GlaI GCGC 2 cut(s) 352, 572
GluI GCNGC 2 cut(s) 384, 462
HaeII RGCGCY 1 cut(s) 354
HhaI GCGC 2 cut(s) 353, 573
Hin1II CATG 4 cut(s) 271, 338, 379, 508
Hin6I GCGC 2 cut(s) 351, 571
HinP1I GCGC 2 cut(s) 351, 571
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 3 cut(s) 4, 145, 284
HpaI GTTAAC 1 cut(s) 510
Hpy166II GTNNAC 2 cut(s) 510, 565
Hpy188I TCNGA 2 cut(s) 66, 73
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 2 cut(s) 510, 565
HpyAV CCTTC 6 cut(s) 220, 273, 373, 382, 426, 632
HpyCH4IV ACGT 1 cut(s) 184
HpyF3I CTNAG 3 cut(s) 199, 525, 645
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 4 cut(s) 271, 338, 379, 508
HspAI GCGC 2 cut(s) 351, 571
KspAI GTTAAC 1 cut(s) 510
Kzo9I GATC 1 cut(s) 270
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 391
LpnPI CCDG 2 cut(s) 559, 600
Lsp1109I GCAGC 2 cut(s) 395, 448
LweI GCATC 2 cut(s) 64, 145
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 44, 414
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 6 cut(s) 192, 347, 350, 360, 587, 619
MfeI CAATTG 1 cut(s) 189
MluCI AATT 6 cut(s) 60, 189, 236, 323, 498, 618
MlyI GAGTC 2 cut(s) 13, 293
MnlI CCTC 8 cut(s) 94, 157, 235, 494, 523, 603, 627, 636
MroXI GAANNNNTTC 2 cut(s) 184, 260
MseI TTAA 4 cut(s) 96, 141, 509, 584
MslI CAYNNNNRTG 1 cut(s) 339
MspCI CTTAAG 1 cut(s) 140
MunI CAATTG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 17
NdeII GATC 1 cut(s) 270
NlaIII CATG 4 cut(s) 271, 338, 379, 508
NlaIV GGNNCC 1 cut(s) 442
NsbI TGCGCA 1 cut(s) 572
NspV TTCGAA 1 cut(s) 598
PagI TCATGA 1 cut(s) 375
PciSI GCTCTTC 1 cut(s) 360
PctI GAATGC 1 cut(s) 17
PdmI GAANNNNTTC 2 cut(s) 184, 260
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 385, 463
PleI GAGTC 2 cut(s) 12, 292
PpsI GAGTC 2 cut(s) 12, 292
PpuMI RGGWCCY 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 1 cut(s) 440
PspPPI RGGWCCY 1 cut(s) 440
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 339
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 4 cut(s) 96, 141, 509, 584
SatI GCNGC 2 cut(s) 384, 462
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 440
ScaI AGTACT 1 cut(s) 26
SchI GAGTC 2 cut(s) 13, 293
SfaNI GCATC 2 cut(s) 64, 145
SfcI CTRYAG 1 cut(s) 274
SfuI TTCGAA 1 cut(s) 598
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 3 cut(s) 140, 311, 485
SmoI CTYRAG 3 cut(s) 140, 311, 485
Sse9I AATT 6 cut(s) 60, 189, 236, 323, 498, 618
SsiI CCGC 2 cut(s) 152, 577
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 598
TasI AATT 6 cut(s) 60, 189, 236, 323, 498, 618
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 4 cut(s) 96, 141, 509, 584
Tru9I TTAA 4 cut(s) 96, 141, 509, 584
TseI GCWGC 2 cut(s) 383, 461
TspDTI ATGAA 4 cut(s) 78, 351, 364, 392
TspGWI ACGGA 1 cut(s) 378
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 2 cut(s) 60, 618
XmiI GTMKAC 1 cut(s) 564
XmnI GAANNNNTTC 2 cut(s) 184, 260
ZrmI AGTACT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.