Rroxscaffold_6G00400970

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000095
Physical Location & Seq
Reverse (-)
23231589 .. 23239352
7764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400970.1

Sequence Viewer

Length: 1866 bp
ATGCCGAGGAGGCTGCCCGAAGATGTAAACGAGCAAGATTCTCTCGAGGGGAAAAAGAGAACATTCAATTCACCGCAGAATCTGCGGGGAATAAAAGAAAAGAGAGGGTCTAAAGGGGGACGTCGAGTTCTAAAGGTGGAGACTCGAAGGAAGAATGTGGAGGTGATTAATATGATCGTGGAGGAAGATTCAACTGCGGTGGAGAATGGTAAACGTAAGTTAGAGAAGACTTTGGAGGGTGAACAAAACACAACAAAGAAGATTAATTTCAACTTGAGCAAGATACAGAGGATTAAGAAGCTTGAGTCCAACAAGGTGGACCGAATCAGCGCCCTACCAGATGAAATTCTTGTGAATATAGTTGCCTTCTTGCCACTAGATGAAGCACAGGCTACGAGTATCCTTTCTAGGCGATGGCGTTATATCTGGAAGTCTGTGTTGGATTATACTATGACTCTTAACTTTGATGCTGAGAAGCATTTGTCCAATTTTGCATCCCGGGAAGAGTTAGCAATTCGTTGGTATGTCGATTGGGTGGATACAGTGTTGAACCAGTACACAGGCCGAAAAATGAAGCAGTTCAGGGTTTGTTATGATTTGGACAGCACGTTTTCAAGGTCGATTGATGAATGGATTCATTTTGCAATGACAAAGGGAGTTGAAATGCTTGAGTTGGACTTATTAGAATATGGTGTTACTGGCCGTTTGGAGTATCCAATTTATACATTTCCCCACAGACTTTTAGGCATCATGAAAGAATCTGCTTGGAAGCACATCTGTTCTGATGTTCCTAGGCTAAGTCCTTGTGCATGCATTGGCTTTAAGTCCCTCAAAGTTCTTAGTTTGAAATGTGTTGATGTGGATGGACAAGTTCTTGAGTACATGTTTTCTAATTGTCCAGTTCTTGAACGGTTATCACTAGGTTATTCCTCGAGCTTGGTTGGTCTAAGAGTTGTTGGTCCATCAATTGCATTGAAGTACTTAGAAATTCGAGGATGTGCTAGACTTGAGAGCATTGAGATCTGTGACACAAACCTTGTTTCTTTTGTTTATTACGGAAATGAGATACACTTGATAGTTAGAAACGTACCACTCCTTGTTGAGGTATCAATTTGTGAGTCTTGTAGTAATGATTACATACAGGTTGCGTTCACCCAACTCTCATGCTGTCTCTCTCAATTAGAGATTCTCAAACTAATTGATGTCATACTGCCCTACAAGAGGAATCCTGTATTTCCTATATTCACAAATCTCAAGCATTTGGAATTAAGATTTTATGAAGATGATGATTGCATTCTTCTTCATTTAACTTCTTTCATTAAGGCATCCCCTTGCTTGCACAACCTTGTGCTGGAGTTGTACCCTTTAACATGCCGAAGAGAAATAGAATTTAGAAAAGCTGCCAAATGCTTCCATGATTACCTAAAGGTAGTGGAAATATTTGGATATCATGGACGCAAAAGTGATTTTGAACTGGTCAAGTTCTTGACAGATATTGCTGTTAATTTGGAGAAAATTGTTACTGATCCTGCTCATCCTGCTGAACGACATTACTGTTATCCTAAACACAGACGAAAGCCGGATATTGAAGTCGTGGCGAGGGCTGAACAGTCAAGTTATGATTATGCTACCATAGTCAAGAAAAAAATTCCTTCGACTTGGGAATTGATTGTGTTGGAAAATGCAGGGGTGCACTTGCTTAAGTTATCTAAAGACAGGCAATCATCGGATACTAAGTCAGAAAGTCAAGGTTTTACTTGGATTACTGCTCATGGGTCTCCGACTTATATGCTGCAAAGGAGCTCTCCCGTGTATGCTTATCTCCTGACTGACATATTTTATGCTGAGAGAAGAGCGGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

621

Amino Acids

71.87

Weight (kDa)

8.39

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 109 - 146 9.1e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 185 - 560 8.9e-43 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 208 - 344 8.9e-11 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 469 - 506 1e-05 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 1856
AciI CCGC 4 cut(s) 74, 85, 197, 1856
AclWI GGATC 1 cut(s) 1520
AcoI YGGCCR 1 cut(s) 700
AcsI RAATTY 4 cut(s) 345, 987, 1388, 1647
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 5 cut(s) 557, 881, 980, 1089, 1361
AfiI CCNNNNNNNGG 3 cut(s) 1102, 1221, 1351
AflII CTTAAG 1 cut(s) 1700
AflIII ACRYGT 1 cut(s) 882
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AloI GAACNNNNNNTCC 2 cut(s) 111, 143
AluBI AGCT 4 cut(s) 301, 936, 1400, 1803
AluI AGCT 4 cut(s) 301, 936, 1400, 1803
Alw21I GWGCWC 2 cut(s) 1695, 1805
Alw26I GTCTC 3 cut(s) 134, 1175, 1782
Alw44I GTGCAC 1 cut(s) 1691
AlwI GGATC 1 cut(s) 1520
AlwNI CAGNNNCTG 1 cut(s) 82
Ama87I CYCGRG 3 cut(s) 44, 498, 931
AoxI GGCC 2 cut(s) 562, 700
ApaLI GTGCAC 1 cut(s) 1691
ApeKI GCWGC 3 cut(s) 13, 1400, 1792
ApoI RAATTY 4 cut(s) 345, 987, 1388, 1647
AseI ATTAAT 2 cut(s) 168, 264
Asp700I GAANNNNTTC 2 cut(s) 578, 633
AspA2I CCTAGG 1 cut(s) 791
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 319, 959
AsuC2I CCSGG 2 cut(s) 499, 500
AsuHPI GGTGA 4 cut(s) 63, 175, 251, 1144
AvaI CYCGRG 3 cut(s) 44, 498, 931
AvaII GGWCC 2 cut(s) 319, 959
AvrII CCTAGG 1 cut(s) 791
BaeGI GKGCMC 1 cut(s) 1695
BanII GRGCYC 1 cut(s) 1805
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 1695, 1805
BbvI GCAGC 2 cut(s) 1387, 1779
BccI CCATC 3 cut(s) 408, 857, 970
BceAI ACGGC 1 cut(s) 687
BcgI CGANNNNNNTGC 3 cut(s) 29, 1771, 1805
BciVI GTATCC 4 cut(s) 410, 532, 723, 1723
BcnI CCSGG 2 cut(s) 499, 500
BcoDI GTCTC 3 cut(s) 134, 1175, 1782
BfaI CTAG 5 cut(s) 377, 408, 792, 920, 1002
BfoI RGCGCY 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 1700
BfuI GTATCC 4 cut(s) 410, 532, 723, 1723
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 1020
BisI GCNGC 3 cut(s) 14, 1401, 1793
BlnI CCTAGG 1 cut(s) 791
BlsI GCNGC 3 cut(s) 15, 1402, 1794
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 2 cut(s) 499, 500
Bme18I GGWCC 2 cut(s) 319, 959
BmeT110I CYCGRG 3 cut(s) 44, 498, 931
BmgT120I GGNCC 2 cut(s) 319, 959
BmrFI CCNGG 2 cut(s) 499, 500
BmsI GCATC 4 cut(s) 457, 503, 756, 1334
BpiI GAAGAC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 1373
BpuEI CTTGAG 6 cut(s) 295, 323, 689, 896, 1028, 1238
BpuMI CCSGG 2 cut(s) 499, 500
BsaHI GRCGYC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 1782
BsaJI CCNNGG 3 cut(s) 5, 498, 791
Bsc4I CCNNNNNNNGG 3 cut(s) 1102, 1221, 1351
Bse1I ACTGG 4 cut(s) 553, 703, 899, 1479
Bse3DI GCAATG 1 cut(s) 651
BseDI CCNNGG 3 cut(s) 5, 498, 791
BseGI GGATG 5 cut(s) 494, 868, 1001, 1325, 1534
BseLI CCNNNNNNNGG 3 cut(s) 1102, 1221, 1351
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 2 cut(s) 462, 1836
BseNI ACTGG 4 cut(s) 553, 703, 899, 1479
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 1695
BseXI GCAGC 2 cut(s) 1387, 1779
BshFI GGCC 2 cut(s) 564, 702
BsiHKAI GWGCWC 2 cut(s) 1695, 1805
BsiHKCI CYCGRG 3 cut(s) 44, 498, 931
BsiSI CCGG 2 cut(s) 499, 1580
BslFI GGGAC 2 cut(s) 132, 811
BslI CCNNNNNNNGG 3 cut(s) 1102, 1221, 1351
BsmAI GTCTC 3 cut(s) 134, 1175, 1782
BsmFI GGGAC 2 cut(s) 132, 811
BsmI GAATGC 1 cut(s) 1293
BsnI GGCC 2 cut(s) 564, 702
Bso31I GGTCTC 1 cut(s) 1782
BsoBI CYCGRG 3 cut(s) 44, 498, 931
Bsp1286I GDGCHC 2 cut(s) 1695, 1805
Bsp143I GATC 3 cut(s) 174, 1020, 1525
BspACI CCGC 4 cut(s) 74, 85, 197, 1856
BspANI GGCC 2 cut(s) 564, 702
BspCNI CTCAG 2 cut(s) 463, 1837
BspHI TCATGA 1 cut(s) 750
BspPI GGATC 1 cut(s) 1520
BspQI GCTCTTC 1 cut(s) 1846
BspTI CTTAAG 1 cut(s) 1700
BspTNI GGTCTC 1 cut(s) 1782
BsrBI CCGCTC 1 cut(s) 1856
BsrDI GCAATG 1 cut(s) 651
BsrI ACTGG 4 cut(s) 553, 703, 899, 1479
BssECI CCNNGG 3 cut(s) 5, 498, 791
BssMI GATC 3 cut(s) 174, 1020, 1525
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 791
Bst4CI ACNGT 4 cut(s) 544, 912, 1556, 1611
Bst6I CTCTTC 3 cut(s) 498, 1372, 1846
BstACI GRCGYC 1 cut(s) 121
BstAFI CTTAAG 1 cut(s) 1700
BstAPI GCANNNNNTGC 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 811, 1337
BstDEI CTNAG 7 cut(s) 471, 797, 839, 947, 982, 1734, 1845
BstENI CCTNNNNNAGG 2 cut(s) 1100, 1219
BstF5I GGATG 5 cut(s) 494, 868, 1001, 1325, 1534
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 3 cut(s) 177, 1023, 1528
BstMAI GTCTC 3 cut(s) 134, 1175, 1782
BstMBI GATC 3 cut(s) 174, 1020, 1525
BstMWI GCNNNNNNNGC 3 cut(s) 10, 82, 1538
BstNSI RCATGY 3 cut(s) 813, 886, 1374
BstSCI CCNGG 2 cut(s) 497, 498
BstSLI GKGCMC 1 cut(s) 1695
BstV1I GCAGC 2 cut(s) 1387, 1779
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 1020
BstXI CCANNNNNNTGG 1 cut(s) 316
BstYI RGATCY 1 cut(s) 1020
BsuI GTATCC 4 cut(s) 410, 532, 723, 1723
BsuRI GGCC 2 cut(s) 564, 702
BtgZI GCGATG 1 cut(s) 427
BtsCI GGATG 5 cut(s) 494, 868, 1001, 1325, 1534
BtsIMutI CAGTG 1 cut(s) 549
Cac8I GCNNGC 2 cut(s) 811, 1337
CaiI CAGNNNCTG 1 cut(s) 82
CciI TCATGA 1 cut(s) 750
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 319, 959
Cfr9I CCCGGG 1 cut(s) 498
CseI GACGC 1 cut(s) 1464
Csp6I GTAC 5 cut(s) 556, 880, 979, 1088, 1360
CspCI CAANNNNNGTGG 2 cut(s) 180, 215
CviAII CATG 8 cut(s) 751, 810, 883, 1164, 1371, 1415, 1451, 1772
CviQI GTAC 5 cut(s) 556, 880, 979, 1088, 1360
DdeI CTNAG 7 cut(s) 471, 797, 839, 947, 982, 1734, 1845
DpnI GATC 3 cut(s) 176, 1022, 1527
DpnII GATC 3 cut(s) 174, 1020, 1525
EaeI YGGCCR 1 cut(s) 700
Eam1104I CTCTTC 3 cut(s) 498, 1372, 1846
EarI CTCTTC 3 cut(s) 498, 1372, 1846
Ecl136II GAGCTC 1 cut(s) 1803
Eco130I CCWWGG 1 cut(s) 791
Eco24I GRGCYC 1 cut(s) 1805
Eco31I GGTCTC 1 cut(s) 1782
Eco32I GATATC 1 cut(s) 1448
Eco47I GGWCC 2 cut(s) 319, 959
Eco53kI GAGCTC 1 cut(s) 1803
Eco88I CYCGRG 3 cut(s) 44, 498, 931
EcoICRI GAGCTC 1 cut(s) 1803
EcoNI CCTNNNNNAGG 2 cut(s) 1100, 1219
EcoRV GATATC 1 cut(s) 1448
EcoT14I CCWWGG 1 cut(s) 791
EcoT22I ATGCAT 1 cut(s) 815
EcoT38I GRGCYC 1 cut(s) 1805
ErhI CCWWGG 1 cut(s) 791
FaeI CATG 8 cut(s) 754, 813, 886, 1167, 1374, 1418, 1454, 1775
FaqI GGGAC 2 cut(s) 132, 811
FatI CATG 8 cut(s) 750, 809, 882, 1163, 1370, 1414, 1450, 1771
FauI CCCGC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 14, 1401, 1793
FokI GGATG 5 cut(s) 481, 875, 1008, 1312, 1521
FriOI GRGCYC 1 cut(s) 1805
Fsp4HI GCNGC 3 cut(s) 14, 1401, 1793
FspBI CTAG 5 cut(s) 377, 408, 792, 920, 1002
GlaI GCGC 1 cut(s) 331
GluI GCNGC 3 cut(s) 14, 1401, 1793
GsuI CTGGAG 1 cut(s) 1373
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 2 cut(s) 564, 702
HapII CCGG 2 cut(s) 499, 1580
HgaI GACGC 1 cut(s) 1464
HhaI GCGC 1 cut(s) 332
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 8 cut(s) 754, 813, 886, 1167, 1374, 1418, 1454, 1775
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 299
HpaII CCGG 2 cut(s) 499, 1580
HphI GGTGA 4 cut(s) 63, 175, 251, 1144
Hpy166II GTNNAC 7 cut(s) 28, 212, 242, 319, 558, 1152, 1693
Hpy188I TCNGA 4 cut(s) 784, 1729, 1741, 1782
Hpy188III TCNNGA 8 cut(s) 44, 427, 751, 875, 905, 1486, 1639, 1825
Hpy8I GTNNAC 7 cut(s) 28, 212, 242, 319, 558, 1152, 1693
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 3 cut(s) 141, 376, 1662
HpyCH4III ACNGT 4 cut(s) 544, 912, 1556, 1611
HpyCH4IV ACGT 4 cut(s) 121, 214, 608, 1086
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 82, 1538
HpyF3I CTNAG 7 cut(s) 471, 797, 839, 947, 982, 1734, 1845
HpySE526I ACGT 4 cut(s) 121, 214, 608, 1086
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 8 cut(s) 754, 813, 886, 1167, 1374, 1418, 1454, 1775
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 3 cut(s) 174, 1020, 1525
LguI GCTCTTC 1 cut(s) 1846
LmnI GCTCC 1 cut(s) 1800
Lsp1109I GCAGC 2 cut(s) 1387, 1779
LweI GCATC 4 cut(s) 457, 503, 756, 1334
MaeI CTAG 5 cut(s) 377, 408, 792, 920, 1002
MaeII ACGT 4 cut(s) 121, 214, 608, 1086
MaeIII GTNAC 3 cut(s) 694, 1025, 1519
MalI GATC 3 cut(s) 176, 1022, 1527
MbiI CCGCTC 1 cut(s) 1856
MboI GATC 3 cut(s) 174, 1020, 1525
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 1 cut(s) 1020
MhlI GDGCHC 2 cut(s) 1695, 1805
MlyI GAGTC 4 cut(s) 136, 314, 448, 1127
MmeI TCCRAC 5 cut(s) 333, 420, 654, 1656, 1805
Mph1103I ATGCAT 1 cut(s) 815
MroXI GAANNNNTTC 2 cut(s) 578, 633
MspCI CTTAAG 1 cut(s) 1700
MspI CCGG 2 cut(s) 499, 1580
MspR9I CCNGG 2 cut(s) 499, 500
MunI CAATTG 1 cut(s) 966
Mva1269I GAATGC 1 cut(s) 1293
MwoI GCNNNNNNNGC 3 cut(s) 10, 82, 1538
NciI CCSGG 2 cut(s) 499, 500
NdeII GATC 3 cut(s) 174, 1020, 1525
NlaIII CATG 8 cut(s) 754, 813, 886, 1167, 1374, 1418, 1454, 1775
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 1025
NsiI ATGCAT 1 cut(s) 815
NspI RCATGY 3 cut(s) 813, 886, 1374
PaeI GCATGC 1 cut(s) 813
PaeR7I CTCGAG 2 cut(s) 44, 931
PagI TCATGA 1 cut(s) 750
PciI ACATGT 1 cut(s) 882
PciSI GCTCTTC 1 cut(s) 1846
PctI GAATGC 1 cut(s) 1293
PdmI GAANNNNTTC 2 cut(s) 578, 633
PfeI GAWTC 8 cut(s) 38, 79, 188, 324, 634, 758, 1186, 1225
PkrI GCNGC 3 cut(s) 15, 1402, 1794
PleI GAGTC 4 cut(s) 136, 313, 448, 1126
PpsI GAGTC 4 cut(s) 136, 313, 448, 1126
PscI ACATGT 1 cut(s) 882
PshBI ATTAAT 2 cut(s) 168, 264
Psp124BI GAGCTC 1 cut(s) 1805
PspPI GGNCC 2 cut(s) 319, 959
PspXI VCTCGAGB 1 cut(s) 931
PstNI CAGNNNCTG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 1020
RsaI GTAC 5 cut(s) 557, 881, 980, 1089, 1361
RsaNI GTAC 5 cut(s) 556, 880, 979, 1088, 1360
SacI GAGCTC 1 cut(s) 1805
SapI GCTCTTC 1 cut(s) 1846
SatI GCNGC 3 cut(s) 14, 1401, 1793
Sau3AI GATC 3 cut(s) 174, 1020, 1525
Sau96I GGNCC 2 cut(s) 319, 959
ScaI AGTACT 1 cut(s) 980
SchI GAGTC 4 cut(s) 136, 314, 448, 1127
ScrFI CCNGG 2 cut(s) 499, 500
SduI GDGCHC 2 cut(s) 1695, 1805
SfaNI GCATC 4 cut(s) 457, 503, 756, 1334
Sfr274I CTCGAG 2 cut(s) 44, 931
SinI GGWCC 2 cut(s) 319, 959
SlaI CTCGAG 2 cut(s) 44, 931
SmaI CCCGGG 1 cut(s) 500
SmlI CTYRAG 9 cut(s) 44, 274, 302, 668, 875, 931, 1007, 1253, 1700
SmoI CTYRAG 9 cut(s) 44, 274, 302, 668, 875, 931, 1007, 1253, 1700
SphI GCATGC 1 cut(s) 813
SsiI CCGC 4 cut(s) 74, 85, 197, 1856
SspI AATATT 1 cut(s) 1440
SspMI CTAG 5 cut(s) 377, 408, 792, 920, 1002
SstI GAGCTC 1 cut(s) 1805
StyD4I CCNGG 2 cut(s) 497, 498
StyI CCWWGG 1 cut(s) 791
TaaI ACNGT 4 cut(s) 544, 912, 1556, 1611
TaiI ACGT 4 cut(s) 124, 217, 611, 1089
TaqI TCGA 8 cut(s) 45, 124, 145, 528, 620, 932, 991, 1655
TaqII GACCGA 1 cut(s) 336
TatI WGTACW 3 cut(s) 555, 879, 978
TfiI GAWTC 8 cut(s) 38, 79, 188, 324, 634, 758, 1186, 1225
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 1 cut(s) 1025
TseI GCWGC 3 cut(s) 13, 1400, 1792
Tsp45I GTSAC 1 cut(s) 1025
TspDTI ATGAA 9 cut(s) 357, 396, 587, 626, 642, 767, 1292, 1293, 1306
TspGWI ACGGA 1 cut(s) 1071
TspMI CCCGGG 1 cut(s) 498
TspRI CASTG 1 cut(s) 549
Vha464I CTTAAG 1 cut(s) 1700
VneI GTGCAC 1 cut(s) 1691
VpaK11BI GGWCC 2 cut(s) 319, 959
VspI ATTAAT 2 cut(s) 168, 264
XagI CCTNNNNNAGG 2 cut(s) 1100, 1219
XapI RAATTY 4 cut(s) 345, 987, 1388, 1647
XceI RCATGY 3 cut(s) 813, 886, 1374
XhoI CTCGAG 2 cut(s) 44, 931
XmaI CCCGGG 1 cut(s) 498
XmaJI CCTAGG 1 cut(s) 791
XmnI GAANNNNTTC 2 cut(s) 578, 633
XspI CTAG 5 cut(s) 377, 408, 792, 920, 1002
ZraI GACGTC 1 cut(s) 122
ZrmI AGTACT 1 cut(s) 980
Zsp2I ATGCAT 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.