Rmu_ssc0000368.1_g000069

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000368.1
OG0000095
Physical Location & Seq
Reverse (-)
316241 .. 317078
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000368.1_g000069.1.cds

Sequence Viewer

Length: 657 bp
atgatctgtctgcccaacccgaggtcaaagacccatccttcttcctctgcacagaaagcctgccactactcagcatcagcatcccctcccgggccagaacgcggtagcagaagcgcctgcagcgttcgtgagatgccggataagattgttgccgatatcttgtctctcttgtcactgaaggaatcaggagctacaagtaccctttctaagagatttaggtatgtgtgggcatcttctaagaatcttaattttgatgctgatgaatctgtacggcgctaccactgggagcgtaacccagaaatgaaagacctggaaaaccgtaaatatgtagattgggtcaatcatgtggtggaacagcatagagatgatcaggaggacgtggaacgatttagggtttgcttctttggtatagacaagcgatttactagttcaattgataggtggattcaatttgcaatgaagaagagagttcgtgttttggagttgaattttttggtgagacaaagtgaagagaagtacacatttccagattatataaaaaggtcttctgaatacatgggctttgagtccctcagagttcttcgtttcgaacgtgttaatgtgactggagatattattgagtacttgttgctcaactgcccttgccttgaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

218

Amino Acids

25.61

Weight (kDa)

8.86

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 102
AciI CCGC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 4 cut(s) 199, 270, 518, 623
AfiI CCNNNNNNNGG 3 cut(s) 21, 90, 101
AflIII ACRYGT 1 cut(s) 592
AgsI TTSAA 4 cut(s) 432, 449, 487, 650
AhlI ACTAGT 1 cut(s) 425
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 168, 493
Ama87I CYCGRG 2 cut(s) 19, 89
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 487
AspLEI GCGC 2 cut(s) 116, 276
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 2 cut(s) 90, 91
AsuHPI GGTGA 1 cut(s) 508
AsuII TTCGAA 1 cut(s) 588
AvaI CYCGRG 2 cut(s) 19, 89
BbsI GAAGAC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 132
BccI CCATC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 311
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 2 cut(s) 90, 91
BcoDI GTCTC 2 cut(s) 168, 493
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 118
BfoI RGCGCY 2 cut(s) 117, 277
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
BmcAI AGTACT 1 cut(s) 623
Bme1390I CCNGG 3 cut(s) 90, 91, 311
BmeT110I CYCGRG 2 cut(s) 19, 89
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 92
BmrFI CCNGG 3 cut(s) 90, 91, 311
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 5 cut(s) 83, 89, 123, 239, 244
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 537
BpmI CTGGAG 1 cut(s) 627
Bpu14I TTCGAA 1 cut(s) 588
BpuMI CCSGG 2 cut(s) 90, 91
BsaJI CCNNGG 2 cut(s) 20, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 90, 101
Bse1I ACTGG 2 cut(s) 287, 610
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 20, 89
BseGI GGATG 2 cut(s) 34, 80
BseLI CCNNNNNNNGG 3 cut(s) 21, 90, 101
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 2 cut(s) 84, 586
BseNI ACTGG 2 cut(s) 287, 610
BseXI GCAGC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 94
BsiHKCI CYCGRG 2 cut(s) 19, 89
BsiSI CCGG 2 cut(s) 90, 137
BslFI GGGAC 1 cut(s) 553
BslI CCNNNNNNNGG 3 cut(s) 21, 90, 101
BsmAI GTCTC 2 cut(s) 168, 493
BsmFI GGGAC 1 cut(s) 553
BsnI GGCC 1 cut(s) 94
BsoBI CYCGRG 2 cut(s) 19, 89
Bsp119I TTCGAA 1 cut(s) 588
Bsp143I GATC 2 cut(s) 3, 367
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 2 cut(s) 83, 585
BspFNI CGCG 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 588
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 2 cut(s) 287, 610
BssECI CCNNGG 2 cut(s) 20, 89
BssMI GATC 2 cut(s) 3, 367
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 2 cut(s) 458, 504
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 2 cut(s) 61, 118
BstDEI CTNAG 4 cut(s) 70, 207, 237, 572
BstF5I GGATG 2 cut(s) 34, 80
BstFNI CGCG 1 cut(s) 102
BstH2I RGCGCY 2 cut(s) 117, 277
BstHHI GCGC 2 cut(s) 116, 276
BstKTI GATC 2 cut(s) 6, 370
BstMAI GTCTC 2 cut(s) 168, 493
BstMBI GATC 2 cut(s) 3, 367
BstMWI GCNNNNNNNGC 2 cut(s) 56, 120
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 3 cut(s) 88, 89, 309
BstSFI CTRYAG 1 cut(s) 118
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 537
BsuRI GGCC 1 cut(s) 94
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 2 cut(s) 34, 80
BtsIMutI CAGTG 2 cut(s) 173, 280
Cac8I GCNNGC 2 cut(s) 61, 118
CfoI GCGC 2 cut(s) 116, 276
Cfr13I GGNCC 1 cut(s) 92
Cfr9I CCCGGG 1 cut(s) 89
Csp6I GTAC 4 cut(s) 198, 269, 517, 622
CviAII CATG 2 cut(s) 344, 556
CviJI RGCY 4 cut(s) 59, 94, 191, 561
CviKI_1 RGCY 4 cut(s) 59, 94, 191, 561
CviQI GTAC 4 cut(s) 198, 269, 517, 622
DdeI CTNAG 4 cut(s) 70, 207, 237, 572
DpnI GATC 2 cut(s) 5, 369
DpnII GATC 2 cut(s) 3, 367
Eam1104I CTCTTC 2 cut(s) 458, 504
EarI CTCTTC 2 cut(s) 458, 504
Eco32I GATATC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 197
Eco88I CYCGRG 2 cut(s) 19, 89
EcoRII CCWGG 1 cut(s) 309
EcoRV GATATC 1 cut(s) 157
FaeI CATG 2 cut(s) 347, 559
FaiI YATR 8 cut(s) 222, 327, 345, 360, 410, 534, 536, 557
FaqI GGGAC 1 cut(s) 553
FatI CATG 2 cut(s) 343, 555
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 2 cut(s) 21, 67
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 426
GlaI GCGC 2 cut(s) 115, 275
GluI GCNGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 627
HaeII RGCGCY 2 cut(s) 117, 277
HaeIII GGCC 1 cut(s) 94
HapII CCGG 2 cut(s) 90, 137
HhaI GCGC 2 cut(s) 116, 276
Hin1II CATG 2 cut(s) 347, 559
Hin6I GCGC 2 cut(s) 114, 274
HinP1I GCGC 2 cut(s) 114, 274
HinfI GANTC 5 cut(s) 182, 241, 263, 445, 566
HpaII CCGG 2 cut(s) 90, 137
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 519
Hpy188I TCNGA 2 cut(s) 550, 575
Hpy188III TCNNGA 4 cut(s) 128, 186, 371, 527
Hpy8I GTNNAC 1 cut(s) 519
HpyAV CCTTC 2 cut(s) 48, 172
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 2 cut(s) 378, 592
HpyCH4V TGCA 3 cut(s) 50, 120, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 120
HpyF3I CTNAG 4 cut(s) 70, 207, 237, 572
HpySE526I ACGT 2 cut(s) 378, 592
Hsp92II CATG 2 cut(s) 347, 559
HspAI GCGC 2 cut(s) 114, 274
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 2 cut(s) 3, 367
LmnI GCTCC 2 cut(s) 188, 286
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 5 cut(s) 83, 89, 123, 239, 244
MaeI CTAG 1 cut(s) 426
MaeII ACGT 2 cut(s) 378, 592
MaeIII GTNAC 3 cut(s) 171, 290, 601
MalI GATC 2 cut(s) 5, 369
MboI GATC 2 cut(s) 3, 367
MboII GAAGA 7 cut(s) 33, 225, 472, 475, 521, 537, 572
MfeI CAATTG 1 cut(s) 432
MluCI AATT 4 cut(s) 247, 432, 449, 487
MlyI GAGTC 1 cut(s) 575
MnlI CCTC 5 cut(s) 15, 55, 96, 367, 581
MseI TTAA 2 cut(s) 246, 597
MslI CAYNNNNRTG 1 cut(s) 363
MspI CCGG 2 cut(s) 90, 137
MspR9I CCNGG 3 cut(s) 90, 91, 311
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 56, 120
NciI CCSGG 2 cut(s) 90, 91
NdeII GATC 2 cut(s) 3, 367
NlaIII CATG 2 cut(s) 347, 559
NmuCI GTSAC 2 cut(s) 171, 601
NspV TTCGAA 1 cut(s) 588
PcsI WCGNNNNNNNCGW 1 cut(s) 589
PfeI GAWTC 4 cut(s) 182, 241, 263, 445
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 122
RsaI GTAC 4 cut(s) 199, 270, 518, 623
RsaNI GTAC 4 cut(s) 198, 269, 517, 622
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 2 cut(s) 246, 597
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 3, 367
Sau96I GGNCC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 623
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 3 cut(s) 90, 91, 311
SetI ASST 8 cut(s) 26, 193, 221, 312, 381, 443, 545, 595
SfaNI GCATC 5 cut(s) 83, 89, 123, 239, 244
SfcI CTRYAG 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 588
SmaI CCCGGG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 363
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 4 cut(s) 247, 432, 449, 487
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 88, 89, 309
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 2 cut(s) 381, 595
TaqI TCGA 1 cut(s) 588
TasI AATT 4 cut(s) 247, 432, 449, 487
TatI WGTACW 2 cut(s) 516, 621
TfiI GAWTC 4 cut(s) 182, 241, 263, 445
Tru1I TTAA 2 cut(s) 246, 597
Tru9I TTAA 2 cut(s) 246, 597
TscAI CASTG 2 cut(s) 180, 287
TseFI GTSAC 2 cut(s) 171, 601
TseI GCWGC 1 cut(s) 120
Tsp45I GTSAC 2 cut(s) 171, 601
TspDTI ATGAA 3 cut(s) 276, 317, 473
TspMI CCCGGG 1 cut(s) 89
TspRI CASTG 2 cut(s) 180, 287
XapI RAATTY 1 cut(s) 487
XmaI CCCGGG 1 cut(s) 89
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.