RchiOBHm_Chr5g0026841

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000095
Physical Location & Seq
Reverse (-)
20843520 .. 20843918
399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30642

Sequence Viewer

Length: 399 bp
ATGGAAAAGGGAGTTCGAACACTGGAGCTGGACTTTTCAGTCTGGGGTTGTGTTCCTCCAATGTATACTTTCCCCCATTACCTTTTGAAACACTTGTGTGACGATCATATTCCAATTCAAGGCCCTTGTGCATGCATCGGTTTGAAGTCCCTTAAGGTTCTTAATTTCAATTGTGTTAATGTGGCTGGAGAAGTTCTCGAGTACTTCTTGTCTAATTGTACCGTTCTTGAACAACTATTAGTGTGTGAGTCCCCATCCTTGATTGATCTAAGAGTTGTTGGTTCATCGGTTGCATTGAAGTATCTACTCGTACAAGACTGTAGCAACATCAAAAGCATTGAGATTTATGATGCAAAACTCATTTCATTTATATACAAGGGAGAGCCGGAGAGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

132

Amino Acids

14.76

Weight (kDa)

5.06

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 3 - 120 1.7e-06 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 42 - 129 9.9e-13 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 65
AfaI GTAC 3 cut(s) 203, 220, 312
AfiI CCNNNNNNNGG 1 cut(s) 119
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 6 cut(s) 88, 119, 145, 169, 230, 298
AleI CACNNNNGTG 1 cut(s) 96
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 122
AsuII TTCGAA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 197
BccI CCATC 1 cut(s) 262
BfmI CTRYAG 1 cut(s) 319
BfrI CTTAAG 1 cut(s) 152
BmcAI AGTACT 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 122
BmsI GCATC 2 cut(s) 144, 340
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 2 cut(s) 44, 207
Bpu14I TTCGAA 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 27
BshFI GGCC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 386
BslFI GGGAC 2 cut(s) 133, 235
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 133, 235
BsnI GGCC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 197
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 2 cut(s) 103, 265
BspANI GGCC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 152
BsrI ACTGG 1 cut(s) 27
BssMI GATC 2 cut(s) 103, 265
BssNAI GTATAC 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 223, 320
BstAFI CTTAAG 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 2 cut(s) 106, 268
BstMBI GATC 2 cut(s) 103, 265
BstNSI RCATGY 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 319
BstZ17I GTATAC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 3 cut(s) 202, 219, 311
CviAII CATG 1 cut(s) 132
CviJI RGCY 4 cut(s) 28, 123, 185, 385
CviKI_1 RGCY 4 cut(s) 28, 123, 185, 385
CviQI GTAC 3 cut(s) 202, 219, 311
DdeI CTNAG 1 cut(s) 269
DpnI GATC 2 cut(s) 105, 267
DpnII GATC 2 cut(s) 103, 265
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 137
FaeI CATG 1 cut(s) 135
FaiI YATR 8 cut(s) 66, 108, 133, 348, 371, 373, 395, 397
FaqI GGGAC 2 cut(s) 133, 235
FatI CATG 1 cut(s) 131
FauNDI CATATG 1 cut(s) 395
FblI GTMKAC 1 cut(s) 65
FokI GGATG 1 cut(s) 241
GsuI CTGGAG 2 cut(s) 44, 207
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 386
Hin1II CATG 1 cut(s) 135
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 66
Hpy188III TCNNGA 2 cut(s) 197, 227
Hpy8I GTNNAC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 223, 320
HpyCH4V TGCA 4 cut(s) 131, 135, 293, 353
HpyF3I CTNAG 1 cut(s) 269
Hsp92II CATG 1 cut(s) 135
Kzo9I GATC 2 cut(s) 103, 265
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 8, 14, 28, 171
LweI GCATC 2 cut(s) 144, 340
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 105, 267
MboI GATC 2 cut(s) 103, 265
MfeI CAATTG 1 cut(s) 169
MluCI AATT 4 cut(s) 114, 163, 169, 214
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 1 cut(s) 66
Mph1103I ATGCAT 1 cut(s) 137
MseI TTAA 3 cut(s) 153, 162, 177
MslI CAYNNNNRTG 1 cut(s) 96
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 1 cut(s) 386
MunI CAATTG 1 cut(s) 169
NdeI CATATG 1 cut(s) 395
NdeII GATC 2 cut(s) 103, 265
NlaIII CATG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 98
NsiI ATGCAT 1 cut(s) 137
NspI RCATGY 1 cut(s) 135
NspV TTCGAA 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 96
PaeI GCATGC 1 cut(s) 135
PaeR7I CTCGAG 1 cut(s) 197
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 3 cut(s) 203, 220, 312
RsaNI GTAC 3 cut(s) 202, 219, 311
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 3 cut(s) 153, 162, 177
Sau3AI GATC 2 cut(s) 103, 265
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 203
SchI GAGTC 1 cut(s) 257
SetI ASST 3 cut(s) 30, 84, 159
SfaNI GCATC 2 cut(s) 144, 340
SfcI CTRYAG 1 cut(s) 319
Sfr274I CTCGAG 1 cut(s) 197
SfuI TTCGAA 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 152, 197
SmoI CTYRAG 2 cut(s) 152, 197
SphI GCATGC 1 cut(s) 135
Sse9I AATT 4 cut(s) 114, 163, 169, 214
TaaI ACNGT 2 cut(s) 223, 320
TaqI TCGA 2 cut(s) 16, 198
TasI AATT 4 cut(s) 114, 163, 169, 214
TatI WGTACW 1 cut(s) 201
Tru1I TTAA 3 cut(s) 153, 162, 177
Tru9I TTAA 3 cut(s) 153, 162, 177
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 273, 354
TspRI CASTG 1 cut(s) 27
Vha464I CTTAAG 1 cut(s) 152
XceI RCATGY 1 cut(s) 135
XhoI CTCGAG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.