RLG00000023621

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000095
Physical Location & Seq
Forward (+)
26169919 .. 26172352
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023621

Sequence Viewer

Length: 723 bp
ATGGAGGAAGAAGGCATACGTTCAACTCCTCGGTCAGTTGAAGACAAGGATAATGAGTACCACTTGAGAAAGAGAGAGAAAAATGGTGATGAGTACAACTCAGTGGACCGAATTAGTGAATTGCCGAATGAAATTTCCGCTAGGATATTGTCTTTCTTACCCCTAAAGGAAGCGCAAGCTACTAGTATCCTTTCTAGGAGATGGAGATATGCTTGGGATTCTACTGCCACTCTCGACTTCGATGCTAAATTTCATGCACCTAGAAATTTGCGTAGCTTCAGAGCCCTCGAAAAGGAATTGAAAGACTCGGAAAGTCGCAGATATGTCAACTGGGTGAATAGTGTGGTGGAACGACACAGAGGCCCAACCGTGGAACGATTCAGGATTTGCTATGATCTTGATTGTCGTTTCACAACTTCGATTGATCAATGGATTCAATTTGCAATGGAAAATGGAGTTGAGGAACTTGAGTTGGAGCTCTTTGTGGAATGCGGCCTTGTCTCCAGTTTTTTCCTTGGGCCAGGTTATGAGGTCTACAAAAATAAGAACCAAGAATTTCATATGCTGGAAAATCTCAAGCATTTGGTTTTAATAGTTGAAGCTGGTTATCCTTGGGTTCTTCATCAATTGGCTTTTTTCATGAAGGCATCTCCTTTCTTGGAGAGACTTGTGTTGAAGATAAATGAGTCGAGTGTAAAGGGAATGAGGTTTAAAGGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

241

Amino Acids

28.31

Weight (kDa)

5.96

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 38 - 74 2.1e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 534
AciI CCGC 2 cut(s) 138, 492
AcsI RAATTY 4 cut(s) 132, 248, 265, 554
AcuI CTGAAG 1 cut(s) 262
AfaI GTAC 2 cut(s) 59, 95
AfiI CCNNNNNNNGG 2 cut(s) 292, 370
AgsI TTSAA 6 cut(s) 24, 41, 301, 437, 599, 676
AhlI ACTAGT 1 cut(s) 182
AjnI CCWGG 1 cut(s) 520
AluBI AGCT 4 cut(s) 179, 276, 478, 602
AluI AGCT 4 cut(s) 179, 276, 478, 602
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 2 cut(s) 505, 658
AoxI GGCC 3 cut(s) 361, 493, 518
ApoI RAATTY 4 cut(s) 132, 248, 265, 554
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 3 cut(s) 106, 362, 518
AsuHPI GGTGA 2 cut(s) 98, 346
AvaII GGWCC 1 cut(s) 106
BanII GRGCYC 2 cut(s) 286, 480
BarI GAAGNNNNNNTAC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 480
BccI CCATC 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 1 cut(s) 522
BciVI GTATCC 1 cut(s) 197
BclI TGATCA 1 cut(s) 424
BcoDI GTCTC 2 cut(s) 505, 658
BcuI ACTAGT 1 cut(s) 182
BfaI CTAG 5 cut(s) 141, 183, 195, 261, 721
BfuI GTATCC 1 cut(s) 197
BisI GCNGC 1 cut(s) 493
BlsI GCNGC 1 cut(s) 494
Bme1390I CCNGG 1 cut(s) 522
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 3 cut(s) 106, 362, 518
BmrFI CCNGG 1 cut(s) 522
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 2 cut(s) 232, 656
BmuI ACTGGG 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpmI CTGGAG 1 cut(s) 487
BpuEI CTTGAG 3 cut(s) 85, 488, 560
BsaJI CCNNGG 4 cut(s) 29, 369, 514, 611
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 370
Bse1I ACTGG 2 cut(s) 335, 504
Bse3DI GCAATG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 4 cut(s) 29, 369, 514, 611
BseLI CCNNNNNNNGG 2 cut(s) 292, 370
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 335, 504
BseRI GAGGAG 1 cut(s) 18
BshFI GGCC 3 cut(s) 363, 495, 520
BsiHKAI GWGCWC 1 cut(s) 480
BslI CCNNNNNNNGG 2 cut(s) 292, 370
BsmAI GTCTC 2 cut(s) 505, 658
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 3 cut(s) 363, 495, 520
Bsp1286I GDGCHC 2 cut(s) 286, 480
Bsp143I GATC 2 cut(s) 394, 424
BspACI CCGC 2 cut(s) 138, 492
BspANI GGCC 3 cut(s) 363, 495, 520
BspCNI CTCAG 1 cut(s) 113
BspHI TCATGA 1 cut(s) 639
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 2 cut(s) 335, 504
BssECI CCNNGG 4 cut(s) 29, 369, 514, 611
BssMI GATC 2 cut(s) 394, 424
BssT1I CCWWGG 2 cut(s) 514, 611
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 369
BstENI CCTNNNNNAGG 1 cut(s) 290
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 2 cut(s) 397, 427
BstMAI GTCTC 2 cut(s) 505, 658
BstMBI GATC 2 cut(s) 394, 424
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 48
BsuI GTATCC 1 cut(s) 197
BsuRI GGCC 3 cut(s) 363, 495, 520
BtgI CCRYGG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 177
CciI TCATGA 1 cut(s) 639
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 3 cut(s) 106, 362, 518
Csp6I GTAC 2 cut(s) 58, 94
CviAII CATG 2 cut(s) 254, 640
CviJI RGCY 9 cut(s) 179, 276, 284, 363, 478, 495, 520, 602, 632
CviKI_1 RGCY 9 cut(s) 179, 276, 284, 363, 478, 495, 520, 602, 632
CviQI GTAC 2 cut(s) 58, 94
DdeI CTNAG 1 cut(s) 100
DpnI GATC 2 cut(s) 396, 426
DpnII GATC 2 cut(s) 394, 424
DraI TTTAAA 1 cut(s) 712
Ecl136II GAGCTC 1 cut(s) 478
Eco130I CCWWGG 2 cut(s) 514, 611
Eco24I GRGCYC 2 cut(s) 286, 480
Eco47I GGWCC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 478
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 2 cut(s) 514, 611
EcoT38I GRGCYC 2 cut(s) 286, 480
ErhI CCWWGG 2 cut(s) 514, 611
FaeI CATG 2 cut(s) 257, 643
FaiI YATR 9 cut(s) 17, 210, 255, 324, 393, 528, 561, 563, 641
FatI CATG 2 cut(s) 253, 639
FauNDI CATATG 1 cut(s) 561
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 1 cut(s) 493
FriOI GRGCYC 2 cut(s) 286, 480
Fsp4HI GCNGC 1 cut(s) 493
FspBI CTAG 5 cut(s) 141, 183, 195, 261, 721
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 493
GsuI CTGGAG 1 cut(s) 487
HaeIII GGCC 3 cut(s) 363, 495, 520
HhaI GCGC 1 cut(s) 175
Hin1II CATG 2 cut(s) 257, 643
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 5 cut(s) 218, 305, 378, 433, 686
HphI GGTGA 2 cut(s) 98, 346
Hpy166II GTNNAC 3 cut(s) 106, 328, 535
Hpy188I TCNGA 2 cut(s) 281, 310
Hpy188III TCNNGA 4 cut(s) 233, 382, 398, 640
Hpy8I GTNNAC 3 cut(s) 106, 328, 535
HpyAV CCTTC 2 cut(s) 5, 637
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 257, 443
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 2 cut(s) 257, 643
HspAI GCGC 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 2 cut(s) 394, 424
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 7 cut(s) 316, 367, 507, 517, 534, 551, 588
LweI GCATC 2 cut(s) 232, 656
MaeI CTAG 5 cut(s) 141, 183, 195, 261, 721
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 716
MalI GATC 2 cut(s) 396, 426
MboI GATC 2 cut(s) 394, 424
MboII GAAGA 4 cut(s) 20, 53, 611, 688
MfeI CAATTG 1 cut(s) 626
MhlI GDGCHC 2 cut(s) 286, 480
MluCI AATT 9 cut(s) 111, 119, 132, 248, 265, 296, 437, 554, 626
MlyI GAGTC 2 cut(s) 299, 695
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 6 cut(s) 39, 296, 353, 454, 523, 699
MseI TTAA 2 cut(s) 590, 711
MspR9I CCNGG 1 cut(s) 522
MunI CAATTG 1 cut(s) 626
Mva1269I GAATGC 1 cut(s) 494
MvaI CCWGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 561
NdeII GATC 2 cut(s) 394, 424
NlaIII CATG 2 cut(s) 257, 643
NmuCI GTSAC 1 cut(s) 716
PagI TCATGA 1 cut(s) 639
PctI GAATGC 1 cut(s) 494
PfeI GAWTC 3 cut(s) 218, 378, 433
PkrI GCNGC 1 cut(s) 494
PleI GAGTC 2 cut(s) 299, 694
PpsI GAGTC 2 cut(s) 299, 694
Psp124BI GAGCTC 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PspPI GGNCC 3 cut(s) 106, 362, 518
RsaI GTAC 2 cut(s) 59, 95
RsaNI GTAC 2 cut(s) 58, 94
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 590, 711
SatI GCNGC 1 cut(s) 493
Sau3AI GATC 2 cut(s) 394, 424
Sau96I GGNCC 3 cut(s) 106, 362, 518
SchI GAGTC 2 cut(s) 299, 695
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 2 cut(s) 286, 480
SfaNI GCATC 2 cut(s) 232, 656
SinI GGWCC 1 cut(s) 106
SmlI CTYRAG 3 cut(s) 64, 467, 575
SmoI CTYRAG 3 cut(s) 64, 467, 575
SpeI ACTAGT 1 cut(s) 182
Sse9I AATT 9 cut(s) 111, 119, 132, 248, 265, 296, 437, 554, 626
SsiI CCGC 2 cut(s) 138, 492
SspMI CTAG 5 cut(s) 141, 183, 195, 261, 721
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 2 cut(s) 514, 611
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 1 cut(s) 22
TaqI TCGA 5 cut(s) 234, 240, 288, 419, 689
TaqII GACCGA 2 cut(s) 21, 123
TasI AATT 9 cut(s) 111, 119, 132, 248, 265, 296, 437, 554, 626
TatI WGTACW 1 cut(s) 93
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 3 cut(s) 218, 378, 433
Tru1I TTAA 2 cut(s) 590, 711
Tru9I TTAA 2 cut(s) 590, 711
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 716
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 6 cut(s) 144, 242, 548, 611, 628, 656
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 4 cut(s) 132, 248, 265, 554
XmiI GTMKAC 1 cut(s) 534
XspI CTAG 5 cut(s) 141, 183, 195, 261, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.