Rh3BG020400

diphthine-ammonia ligase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
1293591 .. 1295064
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG020400.1

Sequence Viewer

Length: 1224 bp
ATGAACCTTAGGTTTGATGCTGTTGACTGCTCAACTGACAATAATTTCCGCCACTACCCTTGCAAACTAAAAGAATTTATAGAGTACTGGAAGCGCTGGAAATACATCGATTGGGTGAATCGTGTGGTGCAACAGCATAGAGGGAAACATATAGGAGAATTCAGGATCAGCCACCCTTTAGATAGTCGCTTTTCAAGTTCCATTAATGAATGGATTCAATTTGCAATGGAAAAGAGTGTTGAAAGGCTTGAGTTGGATTTTGATCCAGCAGTTTACGTTTTTACTAGATTTGAAGATTATACATTTCCCCACAAACTTTTGGGGATCTGCTTTCCAAGTCTGGGCTTTTGTGGATACAATATTGGTTTCAAGTCCCTCAAAGTTCTTCAGATCCGACATGTTGGTGTGACTGGAGAAGTTCTCGAGTATTTCCTGTCCAACTGTCCATTACTCGAGAGATTATCAGTCACTTGCGCAAAACGTTTGGTTAATTTAAGAGTTGTTGGTTCATCGATTGCGTTGAAGTATTTGGTGATACAAAATTGTCATAACCTGGAAAGCATTGAAATCAGAGACGTAAACATCGTTTCATTTATTTATTGTGGATATCGTTCAACAAATATCAGTAACGTACCATTGCTTTCTGAGGTAACCGTTTCTAATCGGTGTTGTCCAAAGGATTTTATAAGGGTTGTGTTGAACCAACTTTCCTGCTGTCTTTCCAACATAGAGATTCTGAAGCTGCATCTCCAGCTGGGAGCGGGCCACAATGAGAATCCTGTATTGCCTCTATTTGCAAATCTGAAGCATTTGGAATTACTAGTTGTAGCAAATTATTATAAGGCACTTCATCATTTAAATAGCTTCCTCAAGGCATCTCCTTACTTGCAGAGACTCGTATTGAAGTTGCAGCTGTATTCGGAGAGAGCATGCATGGGAATGGGAGAAATTGAGAAAGCAGCTGATTGCCCCCATAATCACCTCAAGGTAGTAGAAATAGTTGGCTATCGAGCTCATAAATCTGGTGTTGAACTTGTCATGCACTTAATAAAGAATGGTCTTGGACTGGAGAAAATTGTGATTGATCCTGTACGGACATGGAGATACCCTAATGGAGCTGATAAGCCACATACAGAACTCGATGAAGAAGTGAAGGCAAGAGATCATGCTAAGCAATACCTTGAAGCAAAAATGCCTTCAACTGTAGAATTTGTGTGCCTGTAG

Protein Analysis

407

Amino Acids

46.96

Weight (kDa)

8.52

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 43 - 404 1.1e-41 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 69 - 193 2.7e-08 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 322 - 361 1.3e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 686, 840
Acc16I TGCGCA 1 cut(s) 475
AccBSI CCGCTC 1 cut(s) 761
AciI CCGC 2 cut(s) 49, 761
AclI AACGTT 1 cut(s) 481
AclWI GGATC 5 cut(s) 173, 257, 332, 385, 1079
AcsI RAATTY 3 cut(s) 74, 158, 1208
AcuI CTGAAG 3 cut(s) 371, 758, 824
AfaI GTAC 3 cut(s) 86, 633, 1092
AfeI AGCGCT 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 341
AflIII ACRYGT 1 cut(s) 397
AhlI ACTAGT 1 cut(s) 820
AjnI CCWGG 1 cut(s) 552
AloI GAACNNNNNNTCC 2 cut(s) 692, 724
AluBI AGCT 7 cut(s) 742, 754, 864, 913, 962, 1013, 1118
AluI AGCT 7 cut(s) 742, 754, 864, 913, 962, 1013, 1118
Alw21I GWGCWC 1 cut(s) 1015
Alw26I GTCTC 2 cut(s) 567, 886
AlwI GGATC 5 cut(s) 173, 257, 332, 385, 1079
Ama87I CYCGRG 2 cut(s) 422, 452
Aor51HI AGCGCT 1 cut(s) 95
AoxI GGCC 1 cut(s) 763
ApeKI GCWGC 3 cut(s) 742, 910, 959
ApoI RAATTY 3 cut(s) 74, 158, 1208
AseI ATTAAT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 2 cut(s) 96, 476
AspS9I GGNCC 1 cut(s) 763
AsuHPI GGTGA 3 cut(s) 127, 544, 971
AvaI CYCGRG 2 cut(s) 422, 452
AxyI CCTNAGG 1 cut(s) 8
BanII GRGCYC 1 cut(s) 1015
Bbv12I GWGCWC 1 cut(s) 1015
BbvI GCAGC 3 cut(s) 729, 922, 971
BciT130I CCWGG 1 cut(s) 554
BciVI GTATCC 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 567, 886
BcuI ACTAGT 1 cut(s) 820
BfaI CTAG 2 cut(s) 285, 821
BfmI CTRYAG 2 cut(s) 1203, 1220
BfoI RGCGCY 1 cut(s) 97
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 3 cut(s) 743, 911, 960
BlpI GCTNAGC 1 cut(s) 1170
BlsI GCNGC 3 cut(s) 744, 912, 961
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 554
BmeT110I CYCGRG 2 cut(s) 422, 452
BmgT120I GGNCC 1 cut(s) 763
BmrFI CCNGG 1 cut(s) 554
BmsI GCATC 3 cut(s) 7, 754, 884
BplI GAGNNNNNCTC 2 cut(s) 405, 437
BpmI CTGGAG 3 cut(s) 432, 734, 1088
Bpu1102I GCTNAGC 1 cut(s) 1170
BpuEI CTTGAG 3 cut(s) 269, 854, 968
Bsa29I ATCGAT 2 cut(s) 108, 512
BsaBI GATNNNNATC 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 3 cut(s) 92, 415, 1071
Bse21I CCTNAGG 1 cut(s) 8
Bse3DI GCAATG 2 cut(s) 231, 635
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 1 cut(s) 554
BseCI ATCGAT 2 cut(s) 108, 512
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 2 cut(s) 231, 635
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 3 cut(s) 92, 415, 1071
BseXI GCAGC 3 cut(s) 729, 922, 971
BseYI CCCAGC 1 cut(s) 754
BshFI GGCC 1 cut(s) 765
BshVI ATCGAT 2 cut(s) 108, 512
BsiHKAI GWGCWC 1 cut(s) 1015
BsiHKCI CYCGRG 2 cut(s) 422, 452
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 567, 886
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 1 cut(s) 765
BsoBI CYCGRG 2 cut(s) 422, 452
Bsp1286I GDGCHC 1 cut(s) 1015
Bsp143I GATC 6 cut(s) 165, 262, 324, 390, 1084, 1162
Bsp1720I GCTNAGC 1 cut(s) 1170
BspACI CCGC 2 cut(s) 49, 761
BspANI GGCC 1 cut(s) 765
BspCNI CTCAG 1 cut(s) 637
BspDI ATCGAT 2 cut(s) 108, 512
BspPI GGATC 5 cut(s) 173, 257, 332, 385, 1079
BsrBI CCGCTC 1 cut(s) 761
BsrDI GCAATG 2 cut(s) 231, 635
BsrI ACTGG 3 cut(s) 92, 415, 1071
BssMI GATC 6 cut(s) 165, 262, 324, 390, 1084, 1162
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 3 cut(s) 443, 655, 1204
BstC8I GCNNGC 2 cut(s) 763, 931
BstDEI CTNAG 3 cut(s) 8, 645, 1170
BstEII GGTNACC 1 cut(s) 649
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 2 cut(s) 96, 476
BstKTI GATC 6 cut(s) 168, 265, 327, 393, 1087, 1165
BstMAI GTCTC 2 cut(s) 567, 886
BstMBI GATC 6 cut(s) 165, 262, 324, 390, 1084, 1162
BstMWI GCNNNNNNNGC 1 cut(s) 751
BstNI CCWGG 1 cut(s) 554
BstNSI RCATGY 2 cut(s) 401, 933
BstPI GGTNACC 1 cut(s) 649
BstSCI CCNGG 1 cut(s) 552
BstSFI CTRYAG 2 cut(s) 1203, 1220
BstV1I GCAGC 3 cut(s) 729, 922, 971
BstX2I RGATCY 2 cut(s) 324, 390
BstYI RGATCY 2 cut(s) 324, 390
Bsu15I ATCGAT 2 cut(s) 108, 512
Bsu36I CCTNAGG 1 cut(s) 8
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 765
BsuTUI ATCGAT 2 cut(s) 108, 512
Cac8I GCNNGC 2 cut(s) 763, 931
CfoI GCGC 2 cut(s) 96, 476
Cfr13I GGNCC 1 cut(s) 763
ClaI ATCGAT 2 cut(s) 108, 512
Csp6I GTAC 3 cut(s) 85, 632, 1091
CspCI CAANNNNNGTGG 2 cut(s) 41, 76
CviAII CATG 6 cut(s) 398, 930, 934, 1039, 1098, 1166
CviQI GTAC 3 cut(s) 85, 632, 1091
DdeI CTNAG 3 cut(s) 8, 645, 1170
DpnI GATC 6 cut(s) 167, 264, 326, 392, 1086, 1164
DpnII GATC 6 cut(s) 165, 262, 324, 390, 1084, 1162
DraI TTTAAA 1 cut(s) 858
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 1013
Eco24I GRGCYC 1 cut(s) 1015
Eco32I GATATC 1 cut(s) 608
Eco47III AGCGCT 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 1013
Eco57I CTGAAG 3 cut(s) 371, 758, 824
Eco81I CCTNAGG 1 cut(s) 8
Eco88I CYCGRG 2 cut(s) 422, 452
Eco91I GGTNACC 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 1013
EcoO65I GGTNACC 1 cut(s) 649
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 552
EcoRV GATATC 1 cut(s) 608
EcoT22I ATGCAT 1 cut(s) 935
EcoT38I GRGCYC 1 cut(s) 1015
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 6 cut(s) 401, 933, 937, 1042, 1101, 1169
FaqI GGGAC 1 cut(s) 358
FatI CATG 6 cut(s) 397, 929, 933, 1038, 1097, 1165
FauI CCCGC 1 cut(s) 754
Fnu4HI GCNGC 3 cut(s) 743, 911, 960
FriOI GRGCYC 1 cut(s) 1015
Fsp4HI GCNGC 3 cut(s) 743, 911, 960
FspBI CTAG 2 cut(s) 285, 821
FspI TGCGCA 1 cut(s) 475
GlaI GCGC 2 cut(s) 95, 475
GluI GCNGC 3 cut(s) 743, 911, 960
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 3 cut(s) 432, 734, 1088
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 1 cut(s) 765
HhaI GCGC 2 cut(s) 96, 476
Hin1II CATG 6 cut(s) 401, 933, 937, 1042, 1101, 1169
Hin6I GCGC 2 cut(s) 94, 474
HinP1I GCGC 2 cut(s) 94, 474
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 5 cut(s) 118, 214, 733, 775, 894
HphI GGTGA 3 cut(s) 127, 544, 971
Hpy166II GTNNAC 3 cut(s) 25, 274, 580
Hpy188I TCNGA 7 cut(s) 390, 395, 572, 646, 738, 804, 922
Hpy188III TCNNGA 3 cut(s) 163, 422, 454
Hpy8I GTNNAC 3 cut(s) 25, 274, 580
HpyAV CCTTC 2 cut(s) 1147, 1206
HpyCH4III ACNGT 3 cut(s) 443, 655, 1204
HpyCH4IV ACGT 4 cut(s) 276, 481, 576, 630
HpyCH4V TGCA 9 cut(s) 63, 130, 224, 745, 797, 889, 910, 933, 1042
HpyF10VI GCNNNNNNNGC 1 cut(s) 751
HpyF3I CTNAG 3 cut(s) 8, 645, 1170
HpySE526I ACGT 4 cut(s) 276, 481, 576, 630
Hsp92II CATG 6 cut(s) 401, 933, 937, 1042, 1101, 1169
HspAI GCGC 2 cut(s) 94, 474
Kzo9I GATC 6 cut(s) 165, 262, 324, 390, 1084, 1162
LmnI GCTCC 2 cut(s) 758, 1115
Lsp1109I GCAGC 3 cut(s) 729, 922, 971
LweI GCATC 3 cut(s) 7, 754, 884
MaeI CTAG 2 cut(s) 285, 821
MaeII ACGT 4 cut(s) 276, 481, 576, 630
MaeIII GTNAC 4 cut(s) 406, 466, 626, 649
MalI GATC 6 cut(s) 167, 264, 326, 392, 1086, 1164
MbiI CCGCTC 1 cut(s) 761
MboI GATC 6 cut(s) 165, 262, 324, 390, 1084, 1162
MboII GAAGA 3 cut(s) 305, 377, 1157
MflI RGATCY 2 cut(s) 324, 390
MhlI GDGCHC 1 cut(s) 1015
MlyI GAGTC 1 cut(s) 888
MmeI TCCRAC 4 cut(s) 234, 418, 462, 747
MnlI CCTC 6 cut(s) 134, 386, 640, 798, 878, 992
Mph1103I ATGCAT 1 cut(s) 935
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 5 cut(s) 204, 489, 494, 857, 1046
MslI CAYNNNNRTG 2 cut(s) 402, 938
MspA1I CMGCKG 3 cut(s) 754, 913, 962
MspR9I CCNGG 1 cut(s) 554
MvaI CCWGG 1 cut(s) 554
MwoI GCNNNNNNNGC 1 cut(s) 751
NdeII GATC 6 cut(s) 165, 262, 324, 390, 1084, 1162
NlaIII CATG 6 cut(s) 401, 933, 937, 1042, 1101, 1169
NmuCI GTSAC 2 cut(s) 406, 466
NsbI TGCGCA 1 cut(s) 475
NsiI ATGCAT 1 cut(s) 935
NspI RCATGY 2 cut(s) 401, 933
PaeI GCATGC 1 cut(s) 933
PaeR7I CTCGAG 2 cut(s) 422, 452
PciI ACATGT 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 4 cut(s) 118, 214, 733, 775
PkrI GCNGC 3 cut(s) 744, 912, 961
PleI GAGTC 1 cut(s) 888
PpsI GAGTC 1 cut(s) 888
PscI ACATGT 1 cut(s) 397
PshBI ATTAAT 1 cut(s) 204
PsiI TTATAA 2 cut(s) 686, 840
Psp124BI GAGCTC 1 cut(s) 1015
Psp1406I AACGTT 1 cut(s) 481
Psp6I CCWGG 1 cut(s) 552
PspEI GGTNACC 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 1 cut(s) 552
PspPI GGNCC 1 cut(s) 763
PsuI RGATCY 2 cut(s) 324, 390
PvuII CAGCTG 3 cut(s) 754, 913, 962
RsaI GTAC 3 cut(s) 86, 633, 1092
RsaNI GTAC 3 cut(s) 85, 632, 1091
RseI CAYNNNNRTG 2 cut(s) 402, 938
SacI GAGCTC 1 cut(s) 1015
SaqAI TTAA 5 cut(s) 204, 489, 494, 857, 1046
SatI GCNGC 3 cut(s) 743, 911, 960
Sau3AI GATC 6 cut(s) 165, 262, 324, 390, 1084, 1162
Sau96I GGNCC 1 cut(s) 763
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 888
ScrFI CCNGG 1 cut(s) 554
SduI GDGCHC 1 cut(s) 1015
SfaNI GCATC 3 cut(s) 7, 754, 884
SfcI CTRYAG 2 cut(s) 1203, 1220
Sfr274I CTCGAG 2 cut(s) 422, 452
SlaI CTCGAG 2 cut(s) 422, 452
SmiI ATTTAAAT 1 cut(s) 858
SmiMI CAYNNNNRTG 2 cut(s) 402, 938
SmlI CTYRAG 5 cut(s) 248, 422, 452, 869, 983
SmoI CTYRAG 5 cut(s) 248, 422, 452, 869, 983
SpeI ACTAGT 1 cut(s) 820
SphI GCATGC 1 cut(s) 933
SsiI CCGC 2 cut(s) 49, 761
SspI AATATT 1 cut(s) 361
SspMI CTAG 2 cut(s) 285, 821
SstI GAGCTC 1 cut(s) 1015
StyD4I CCNGG 1 cut(s) 552
SwaI ATTTAAAT 1 cut(s) 858
TaaI ACNGT 3 cut(s) 443, 655, 1204
TaiI ACGT 4 cut(s) 279, 484, 579, 633
TaqI TCGA 6 cut(s) 108, 423, 453, 512, 1009, 1140
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 4 cut(s) 118, 214, 733, 775
Tru1I TTAA 5 cut(s) 204, 489, 494, 857, 1046
Tru9I TTAA 5 cut(s) 204, 489, 494, 857, 1046
TseFI GTSAC 2 cut(s) 406, 466
TseI GCWGC 3 cut(s) 742, 910, 959
Tsp45I GTSAC 2 cut(s) 406, 466
TspDTI ATGAA 6 cut(s) 17, 222, 498, 579, 839, 1158
TspGWI ACGGA 1 cut(s) 1108
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 3 cut(s) 74, 158, 1208
XceI RCATGY 2 cut(s) 401, 933
XhoI CTCGAG 2 cut(s) 422, 452
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 2 cut(s) 285, 821
ZrmI AGTACT 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.