Rorug07G0041200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000095
Physical Location & Seq
Forward (+)
2894615 .. 2897841
3227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0041200.1

Sequence Viewer

Length: 1389 bp
ATGCTGCAGGAAACTAAGGACCCGGCGATCAAGCTTTTCGGGATGAAGATTCTGCTGCCGGCCGGCGGCGACTACGATGACTTGGGGTTTACTATGCCCGGAAAGAAACGAGTTGATCAAGAACATGAAGAAGAGAAGGATTCACCATCAACAAAAGACACTGAGAGCATAGAAGAACAAGATGATTCTCCAAAAACTGAAGACTCAACAAGTATGGAAATGCTACCAGATTGTAATGTGAACCCAAAGACACCCTCAATCGATGAAGAAAGCGCAAAATCAAAAGCTCCGAAGGAGAAAGAACAGAATGATGCAACCAACTTGCAAGAGAAAACCCTGAAGAAGCCTGACAAGATACTACCATGCCCTCGCTGCAATAGCATGGACACCAAGTTTTGTTACTACAACAATTACAACGTCAATCAACCGCGCCATTTCTGCAAGGCTTGTCAAAGATATTGGACTGCAGGCGGTACAATGAGGAATGTGCCTGTGGGAGCTGGACGTCGGAAGAACAAGAACTCTGCCTCACACTATCGCCAGATCACAATTTCTGAGGCTCTCCAAGTAGCTCGAATGGATGCTCCAAATGGAGCTCACCACCCCGGATTGAAAAGCAATGGGAGAGTCCTTAACTTTGGCGTAGATGCACCAGTGTGTGATTCCATGGCTTCTGTTTTACACCTTGCAGATAAAAAGGGTTTAAATATTACTACTCGAAATGGATTTCATAAGAGCGAAGAATTAGTATTTCCAGCTCCTTGCAAGGGTAGAGAAAATGGCAATGATTGCTCAATTGCATCTTCTGTAACAGCTTCGAAACCACAAATTCAGAATGCCAATGGCTTCTCCTCACAAATTCCTTGTCTTCCTGGTGTTCCTTGGCCTTATCAATGGAATTCAGCTGTTCCCCCACCGGCTTTTGGCCCTCCGGGAATGCCTATACCAGTTTTCCCAGCAGCTTATTGGAACTGTGGCGTCCCTTTCCAAGTGCCAGTTCCTTGGTTCAGTCCACAGCCTGCTTCTCCCAACCAAAAGTCTCCAAACTCTGCCTCAATTTCTCCGACACTGGGGAAGCATTCAAGGGAGGGAGAGATTCTCAGACCAGAAGTTCATTTGGAGAAAGAAGAACCATCAAAAAAGAAAAATGGATTTGTTTTGGTTCCAAAAACATTAAGGATTGATGACCCAAGTGAAGCTGCAAAGAGTTCAATATGGACAACACTTGGGATCAAGAATGATTGCATCAGCAGTGGGAATGAGCTGTTTAAGGCCTTCCAATCACAATCAAAGGGTGATCAAAAGAAACATGTCCCTGAAACCTCTCCAGCTTTGCTAGCCAACCCAGCAGCCTTGTCTAGATCACTCAACTTCCACGAGAGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

462

Amino Acids

50.77

Weight (kDa)

8.33

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 118 - 174 4.9e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 508
AccII CGCG 1 cut(s) 430
AciI CCGC 3 cut(s) 66, 428, 471
AclWI GGATC 1 cut(s) 1238
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 3 cut(s) 828, 858, 898
AcuI CTGAAG 2 cut(s) 219, 359
AcyI GRCGYC 2 cut(s) 505, 978
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 4 cut(s) 65, 767, 923, 1070
AflIII ACRYGT 1 cut(s) 1309
AgsI TTSAA 3 cut(s) 613, 1083, 1212
AjnI CCWGG 1 cut(s) 871
AjuI GAANNNNNNNTTGG 2 cut(s) 981, 1013
AleI CACNNNNGTG 1 cut(s) 655
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 1 cut(s) 1044
AlwI GGATC 1 cut(s) 1238
AoxI GGCC 4 cut(s) 60, 884, 925, 1272
ApeKI GCWGC 6 cut(s) 4, 55, 372, 959, 1199, 1349
ApoI RAATTY 3 cut(s) 828, 858, 898
ArsI GACNNNNNNTTYG 2 cut(s) 850, 882
AspLEI GCGC 2 cut(s) 275, 432
AspS9I GGNCC 2 cut(s) 19, 926
AsuC2I CCSGG 4 cut(s) 23, 99, 606, 933
AsuHPI GGTGA 3 cut(s) 135, 590, 1307
AsuII TTCGAA 1 cut(s) 818
AsuNHI GCTAGC 1 cut(s) 1336
AvaII GGWCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 598
BauI CACGAG 1 cut(s) 1376
BbsI GAAGAC 2 cut(s) 207, 860
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 5 cut(s) 42, 359, 971, 1186, 1361
BccI CCATC 2 cut(s) 154, 1141
BciT130I CCWGG 1 cut(s) 873
BclI TGATCA 2 cut(s) 115, 1297
BcnI CCSGG 4 cut(s) 23, 99, 606, 933
BcoDI GTCTC 1 cut(s) 1044
BfaI CTAG 2 cut(s) 1337, 1359
BfmI CTRYAG 2 cut(s) 5, 465
BisI GCNGC 7 cut(s) 5, 56, 67, 373, 960, 1200, 1350
BlsI GCNGC 7 cut(s) 6, 57, 68, 374, 961, 1201, 1351
Bme1390I CCNGG 5 cut(s) 23, 99, 606, 873, 933
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 19, 926
BmiI GGNNCC 2 cut(s) 21, 1164
BmrFI CCNGG 5 cut(s) 23, 99, 606, 873, 933
BmrI ACTGGG 1 cut(s) 1079
BmsI GCATC 5 cut(s) 301, 571, 637, 809, 1254
BmtI GCTAGC 1 cut(s) 1340
BmuI ACTGGG 1 cut(s) 1079
BpiI GAAGAC 2 cut(s) 207, 860
BplI GAGNNNNNCTC 2 cut(s) 1083, 1115
BpmI CTGGAG 1 cut(s) 1311
Bpu14I TTCGAA 1 cut(s) 818
BpuMI CCSGG 4 cut(s) 23, 99, 606, 933
Bsa29I ATCGAT 1 cut(s) 261
BsaHI GRCGYC 2 cut(s) 505, 978
BsaJI CCNNGG 4 cut(s) 604, 666, 881, 1001
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 767, 923, 1070
Bse118I RCCGGY 3 cut(s) 58, 62, 916
Bse1I ACTGG 4 cut(s) 653, 947, 995, 1074
Bse3DI GCAATG 2 cut(s) 625, 790
BseBI CCWGG 1 cut(s) 873
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 4 cut(s) 604, 666, 881, 1001
BseGI GGATG 2 cut(s) 48, 586
BseLI CCNNNNNNNGG 4 cut(s) 65, 767, 923, 1070
BseMI GCAATG 2 cut(s) 625, 790
BseMII CTCAG 3 cut(s) 153, 546, 1114
BseNI ACTGG 4 cut(s) 653, 947, 995, 1074
BseRI GAGGAG 1 cut(s) 841
BseX3I CGGCCG 1 cut(s) 60
BseXI GCAGC 5 cut(s) 42, 359, 971, 1186, 1361
BseYI CCCAGC 2 cut(s) 955, 1345
Bsh1236I CGCG 1 cut(s) 430
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 4 cut(s) 62, 886, 927, 1274
BshVI ATCGAT 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 7 cut(s) 23, 59, 63, 99, 606, 917, 932
BslFI GGGAC 2 cut(s) 965, 1298
BslI CCNNNNNNNGG 4 cut(s) 65, 767, 923, 1070
BsmAI GTCTC 1 cut(s) 1044
BsmFI GGGAC 2 cut(s) 965, 1298
BsmI GAATGC 3 cut(s) 841, 942, 1078
BsnI GGCC 4 cut(s) 62, 886, 927, 1274
Bsp119I TTCGAA 1 cut(s) 818
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 6 cut(s) 27, 115, 543, 1230, 1297, 1361
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 3 cut(s) 66, 428, 471
BspANI GGCC 4 cut(s) 62, 886, 927, 1274
BspCNI CTCAG 3 cut(s) 154, 547, 1113
BspDI ATCGAT 1 cut(s) 261
BspFNI CGCG 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 21, 1164
BspMAI CTGCAG 2 cut(s) 9, 469
BspOI GCTAGC 1 cut(s) 1340
BspPI GGATC 1 cut(s) 1238
BspT104I TTCGAA 1 cut(s) 818
BsrDI GCAATG 2 cut(s) 625, 790
BsrFI RCCGGY 3 cut(s) 58, 62, 916
BsrI ACTGG 4 cut(s) 653, 947, 995, 1074
BssAI RCCGGY 3 cut(s) 58, 62, 916
BssECI CCNNGG 4 cut(s) 604, 666, 881, 1001
BssMI GATC 6 cut(s) 27, 115, 543, 1230, 1297, 1361
BssNI GRCGYC 2 cut(s) 505, 978
BssSI CACGAG 1 cut(s) 1376
BssT1I CCWWGG 3 cut(s) 666, 881, 1001
Bst2BI CACGAG 1 cut(s) 1376
Bst2UI CCWGG 1 cut(s) 873
Bst4CI ACNGT 1 cut(s) 974
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 2 cut(s) 505, 978
BstAPI GCANNNNNTGC 1 cut(s) 789
BstBI TTCGAA 1 cut(s) 818
BstC8I GCNNGC 5 cut(s) 60, 64, 469, 1020, 1338
BstDEI CTNAG 4 cut(s) 15, 162, 555, 1100
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 2 cut(s) 48, 586
BstFNI CGCG 1 cut(s) 430
BstHHI GCGC 2 cut(s) 275, 432
BstKTI GATC 6 cut(s) 30, 118, 546, 1233, 1300, 1364
BstMAI GTCTC 1 cut(s) 1044
BstMBI GATC 6 cut(s) 27, 115, 543, 1230, 1297, 1361
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 6 cut(s) 372, 378, 438, 789, 1337, 1346
BstNI CCWGG 1 cut(s) 873
BstNSI RCATGY 1 cut(s) 1313
BstSCI CCNGG 5 cut(s) 21, 97, 604, 871, 931
BstSFI CTRYAG 2 cut(s) 5, 465
BstUI CGCG 1 cut(s) 430
BstV1I GCAGC 5 cut(s) 42, 359, 971, 1186, 1361
BstV2I GAAGAC 2 cut(s) 207, 860
BstXI CCANNNNNNTGG 1 cut(s) 1002
BstZI CGGCCG 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 261
BsuRI GGCC 4 cut(s) 62, 886, 927, 1274
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 666
BtsCI GGATG 2 cut(s) 48, 586
BtsI GCAGTG 1 cut(s) 1258
BtsIMutI CAGTG 4 cut(s) 159, 660, 1067, 1258
Cac8I GCNNGC 5 cut(s) 60, 64, 469, 1020, 1338
CfoI GCGC 2 cut(s) 275, 432
Cfr10I RCCGGY 3 cut(s) 58, 62, 916
Cfr13I GGNCC 2 cut(s) 19, 926
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 1 cut(s) 967
Csp6I GTAC 1 cut(s) 474
CviAII CATG 5 cut(s) 125, 363, 382, 667, 1310
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 4 cut(s) 15, 162, 555, 1100
DpnI GATC 6 cut(s) 29, 117, 545, 1232, 1299, 1363
DpnII GATC 6 cut(s) 27, 115, 543, 1230, 1297, 1361
DraI TTTAAA 1 cut(s) 705
EaeI YGGCCR 1 cut(s) 60
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 596
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 3 cut(s) 666, 881, 1001
Eco147I AGGCCT 1 cut(s) 1274
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 1 cut(s) 19
Eco52I CGGCCG 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 596
Eco57I CTGAAG 2 cut(s) 219, 359
EcoICRI GAGCTC 1 cut(s) 596
EcoO109I RGGNCCY 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 898
EcoRII CCWGG 1 cut(s) 871
EcoT14I CCWWGG 3 cut(s) 666, 881, 1001
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 3 cut(s) 666, 881, 1001
FaeI CATG 5 cut(s) 128, 366, 385, 670, 1313
FaqI GGGAC 2 cut(s) 965, 1298
FatI CATG 5 cut(s) 124, 362, 381, 666, 1309
FbaI TGATCA 2 cut(s) 115, 1297
Fnu4HI GCNGC 7 cut(s) 5, 56, 67, 373, 960, 1200, 1350
FokI GGATG 2 cut(s) 55, 593
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 7 cut(s) 5, 56, 67, 373, 960, 1200, 1350
FspBI CTAG 2 cut(s) 1337, 1359
GlaI GCGC 2 cut(s) 274, 431
GluI GCNGC 7 cut(s) 5, 56, 67, 373, 960, 1200, 1350
GsaI CCCAGC 2 cut(s) 959, 1349
GsuI CTGGAG 1 cut(s) 1311
HaeIII GGCC 4 cut(s) 62, 886, 927, 1274
HapII CCGG 7 cut(s) 23, 59, 63, 99, 606, 917, 932
HgaI GACGC 1 cut(s) 967
HhaI GCGC 2 cut(s) 275, 432
Hin1I GRCGYC 2 cut(s) 505, 978
Hin1II CATG 5 cut(s) 128, 366, 385, 670, 1313
Hin6I GCGC 2 cut(s) 273, 430
HinP1I GCGC 2 cut(s) 273, 430
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 7 cut(s) 49, 140, 185, 203, 627, 662, 1096
HpaII CCGG 7 cut(s) 23, 59, 63, 99, 606, 917, 932
HphI GGTGA 3 cut(s) 135, 590, 1307
Hpy166II GTNNAC 3 cut(s) 90, 241, 1013
Hpy188I TCNGA 6 cut(s) 291, 510, 556, 834, 1065, 1103
Hpy188III TCNNGA 4 cut(s) 40, 119, 1234, 1359
Hpy8I GTNNAC 3 cut(s) 90, 241, 1013
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 3 cut(s) 130, 286, 1285
HpyCH4III ACNGT 1 cut(s) 974
HpyCH4IV ACGT 2 cut(s) 417, 505
HpyF10VI GCNNNNNNNGC 6 cut(s) 372, 378, 438, 789, 1337, 1346
HpyF3I CTNAG 4 cut(s) 15, 162, 555, 1100
HpySE526I ACGT 2 cut(s) 417, 505
Hsp92I GRCGYC 2 cut(s) 505, 978
Hsp92II CATG 5 cut(s) 128, 366, 385, 670, 1313
HspAI GCGC 2 cut(s) 273, 430
KroI GCCGGC 2 cut(s) 58, 62
KroNI GCCGGC 2 cut(s) 60, 64
Ksp22I TGATCA 2 cut(s) 115, 1297
Kzo9I GATC 6 cut(s) 27, 115, 543, 1230, 1297, 1361
LmnI GCTCC 5 cut(s) 292, 497, 589, 593, 763
Lsp1109I GCAGC 5 cut(s) 42, 359, 971, 1186, 1361
LweI GCATC 5 cut(s) 301, 571, 637, 809, 1254
MaeI CTAG 2 cut(s) 1337, 1359
MaeII ACGT 2 cut(s) 417, 505
MaeIII GTNAC 2 cut(s) 398, 808
MalI GATC 6 cut(s) 29, 117, 545, 1232, 1299, 1363
MboI GATC 6 cut(s) 27, 115, 543, 1230, 1297, 1361
MfeI CAATTG 1 cut(s) 795
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 8 cut(s) 409, 549, 743, 795, 828, 858, 898, 1056
MlyI GAGTC 2 cut(s) 197, 636
MmeI TCCRAC 2 cut(s) 488, 1088
MroNI GCCGGC 2 cut(s) 58, 62
MseI TTAA 4 cut(s) 633, 704, 1175, 1269
MslI CAYNNNNRTG 1 cut(s) 655
MspA1I CMGCKG 1 cut(s) 905
MspI CCGG 7 cut(s) 23, 59, 63, 99, 606, 917, 932
MspR9I CCNGG 5 cut(s) 23, 99, 606, 873, 933
MunI CAATTG 1 cut(s) 795
Mva1269I GAATGC 3 cut(s) 841, 942, 1078
MvaI CCWGG 1 cut(s) 873
MvnI CGCG 1 cut(s) 430
MwoI GCNNNNNNNGC 6 cut(s) 372, 378, 438, 789, 1337, 1346
NaeI GCCGGC 2 cut(s) 60, 64
NciI CCSGG 4 cut(s) 23, 99, 606, 933
NcoI CCATGG 1 cut(s) 666
NdeII GATC 6 cut(s) 27, 115, 543, 1230, 1297, 1361
NgoMIV GCCGGC 2 cut(s) 58, 62
NheI GCTAGC 1 cut(s) 1336
NlaIII CATG 5 cut(s) 128, 366, 385, 670, 1313
NlaIV GGNNCC 2 cut(s) 21, 1164
NspI RCATGY 1 cut(s) 1313
NspV TTCGAA 1 cut(s) 818
OliI CACNNNNGTG 1 cut(s) 655
PceI AGGCCT 1 cut(s) 1274
PciI ACATGT 1 cut(s) 1309
PctI GAATGC 3 cut(s) 841, 942, 1078
PdiI GCCGGC 2 cut(s) 60, 64
PfeI GAWTC 5 cut(s) 49, 140, 185, 662, 1096
PfoI TCCNGGA 1 cut(s) 931
PkrI GCNGC 7 cut(s) 6, 57, 68, 374, 961, 1201, 1351
PleI GAGTC 2 cut(s) 197, 635
PpsI GAGTC 2 cut(s) 197, 635
PpuMI RGGWCCY 1 cut(s) 19
PscI ACATGT 1 cut(s) 1309
Psp124BI GAGCTC 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 871
PspFI CCCAGC 2 cut(s) 955, 1345
PspGI CCWGG 1 cut(s) 871
PspN4I GGNNCC 2 cut(s) 21, 1164
PspPI GGNCC 2 cut(s) 19, 926
PspPPI RGGWCCY 1 cut(s) 19
PstI CTGCAG 2 cut(s) 9, 469
PvuII CAGCTG 1 cut(s) 905
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 1 cut(s) 655
SacI GAGCTC 1 cut(s) 598
SaqAI TTAA 4 cut(s) 633, 704, 1175, 1269
SatI GCNGC 7 cut(s) 5, 56, 67, 373, 960, 1200, 1350
Sau3AI GATC 6 cut(s) 27, 115, 543, 1230, 1297, 1361
Sau96I GGNCC 2 cut(s) 19, 926
SchI GAGTC 2 cut(s) 197, 636
ScrFI CCNGG 5 cut(s) 23, 99, 606, 873, 933
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 5 cut(s) 301, 571, 637, 809, 1254
SfcI CTRYAG 2 cut(s) 5, 465
SfuI TTCGAA 1 cut(s) 818
SinI GGWCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 655
Sse9I AATT 8 cut(s) 409, 549, 743, 795, 828, 858, 898, 1056
SseBI AGGCCT 1 cut(s) 1274
SsiI CCGC 3 cut(s) 66, 428, 471
SspI AATATT 1 cut(s) 709
SspMI CTAG 2 cut(s) 1337, 1359
SstI GAGCTC 1 cut(s) 598
StuI AGGCCT 1 cut(s) 1274
StyD4I CCNGG 5 cut(s) 21, 97, 604, 871, 931
StyI CCWWGG 3 cut(s) 666, 881, 1001
TaaI ACNGT 1 cut(s) 974
TaiI ACGT 2 cut(s) 420, 508
TaqI TCGA 4 cut(s) 261, 574, 718, 818
TasI AATT 8 cut(s) 409, 549, 743, 795, 828, 858, 898, 1056
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 5 cut(s) 49, 140, 185, 662, 1096
Tru1I TTAA 4 cut(s) 633, 704, 1175, 1269
Tru9I TTAA 4 cut(s) 633, 704, 1175, 1269
TscAI CASTG 4 cut(s) 166, 660, 1074, 1258
TseI GCWGC 6 cut(s) 4, 55, 372, 959, 1199, 1349
TspDTI ATGAA 5 cut(s) 59, 141, 279, 719, 1103
TspRI CASTG 4 cut(s) 166, 660, 1074, 1258
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 3 cut(s) 828, 858, 898
XbaI TCTAGA 1 cut(s) 1358
XceI RCATGY 1 cut(s) 1313
XcmI CCANNNNNNNNNTGG 1 cut(s) 963
XspI CTAG 2 cut(s) 1337, 1359
ZraI GACGTC 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.