Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000095

Physical Location & Seq

Genomic Coordinates Reverse (-)

1316757 .. 1317053

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG020900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGAAAGCAGTGTTGAAATGCTTGAATTGGAATTTTATCCAGAAGTTTTTATTAGATTTGAAGATTATACATTTCCCCAAAAACTTTTGGGGATCTGCAGTCCAAGTCTGGTCTCTTGTGGATACAATATTGGCTTCAAGTCCCTCAAAGTTCTTCAGATCCGACATGTTGGTATGACTGGAGAAGTTCTCGAGTATTTCCTGGCCAACTGCCCATTACTCGAGAGATTATCAGTGTCTTCCACAAAACATTTGGTTAATTTAAGAGTTGTTGGTACATCGATTGCGTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016874 GO:0016879 GO:0016880 GO:0017178 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

Diphthami_syn_2 Ribonuc_L-PSP

Protein Analysis

98

Amino Acids

11.06

Weight (kDa)

5.6

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	30 - 95	1e-07	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000095)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica	MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica	Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis	pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis	RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata	RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora	Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii	Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa	Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha	Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana	Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	101, 154
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	1 cut(s)	277
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	5 cut(s)	17, 26, 62, 139, 292
AjnI	CCWGG	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	2 cut(s)	101, 154
Ama87I	CYCGRG	2 cut(s)	191, 221
AoxI	GGCC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	32
AvaI	CYCGRG	2 cut(s)	191, 221
BalI	TGGCCA	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	203
BmeT110I	CYCGRG	2 cut(s)	191, 221
BmrFI	CCNGG	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BpmI	CTGGAG	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	203
BseCI	ATCGAT	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	281
BsiHKCI	CYCGRG	2 cut(s)	191, 221
BslFI	GGGAC	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	2 cut(s)	191, 221
Bsp143I	GATC	2 cut(s)	93, 159
BspANI	GGCC	1 cut(s)	206
BspDI	ATCGAT	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	101
BspPI	GGATC	2 cut(s)	101, 154
BspTNI	GGTCTC	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	93, 159
Bst2UI	CCWGG	1 cut(s)	203
BstKTI	GATC	2 cut(s)	96, 162
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	2 cut(s)	93, 159
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	2 cut(s)	93, 159
BstYI	RGATCY	2 cut(s)	93, 159
Bsu15I	ATCGAT	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 240
ClaI	ATCGAT	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	2 cut(s)	135, 206
CviKI_1	RGCY	2 cut(s)	135, 206
CviQI	GTAC	1 cut(s)	276
DpnI	GATC	2 cut(s)	95, 161
DpnII	GATC	2 cut(s)	93, 159
EaeI	YGGCCR	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	2 cut(s)	191, 221
EcoRII	CCWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	170
FaiI	YATR	3 cut(s)	69, 168, 176
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	159, 164
Hpy188III	TCNNGA	3 cut(s)	41, 191, 223
HpyCH4V	TGCA	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	93, 159
LpnPI	CCDG	5 cut(s)	54, 95, 165, 188, 215
MalI	GATC	2 cut(s)	95, 161
MboI	GATC	2 cut(s)	93, 159
MboII	GAAGA	3 cut(s)	74, 146, 231
MflI	RGATCY	2 cut(s)	93, 159
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	3 cut(s)	26, 32, 259
MluNI	TGGCCA	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	1 cut(s)	155
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	2 cut(s)	258, 263
Msp20I	TGGCCA	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	93, 159
NlaIII	CATG	1 cut(s)	170
NspI	RCATGY	1 cut(s)	170
PaeR7I	CTCGAG	2 cut(s)	191, 221
PciI	ACATGT	1 cut(s)	166
PscI	ACATGT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	101
PsuI	RGATCY	2 cut(s)	93, 159
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	258, 263
Sau3AI	GATC	2 cut(s)	93, 159
ScrFI	CCNGG	1 cut(s)	203
SfcI	CTRYAG	1 cut(s)	97
Sfr274I	CTCGAG	2 cut(s)	191, 221
SlaI	CTCGAG	2 cut(s)	191, 221
SmlI	CTYRAG	2 cut(s)	191, 221
SmoI	CTYRAG	2 cut(s)	191, 221
Sse9I	AATT	3 cut(s)	26, 32, 259
SspI	AATATT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	201
TaqI	TCGA	3 cut(s)	192, 222, 281
TasI	AATT	3 cut(s)	26, 32, 259
Tru1I	TTAA	2 cut(s)	258, 263
Tru9I	TTAA	2 cut(s)	258, 263
TscAI	CASTG	2 cut(s)	16, 240
TspRI	CASTG	2 cut(s)	16, 240
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XhoI	CTCGAG	2 cut(s)	191, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.