Rroxscaffold_1G00013770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000095
Physical Location & Seq
Forward (+)
16952226 .. 16957788
5563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013770.1

Sequence Viewer

Length: 459 bp
ATGAAGTCCGATGTTTTTCATGCCTTCGATGTTTTCTTATTGTGGCCGTGGAAGAGAGTCTATGCTCTTCTTGTGAATTTCATACCTCTCTTCAGCCTCGCGCTGCGCGCACTCCTCTTCAGTAACACACTTTCTCTCTCTCCCCCCCCCCCCCCTCCCTTGCGCTCAGCAATCACTGGTGGTGGTGGGAGCTTGATAGGAGAAGGTGGTCAATCCACTATTCGAGAAGCATCGGAAGCAGATCAGGATTGGAAGGGGATTGCCTCTGAAGAGAGATCCGTCCGGATTCGTCGACCTTGGGCCATTTGTTCAGATCTAACTCGGTATGTATTCGATCCTTCCTTTTTTTCCCCCTATATATCATGCATATTCATCTTAGTATGGTGGATTAGATTGGGTTTTCATTACTGTGGCTTTGCAATATCAGGATGGATAAGTCAGAATTTGGCAATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.15

Weight (kDa)

8.55

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 292
AccII CGCG 2 cut(s) 101, 108
AccIII TCCGGA 1 cut(s) 282
AclWI GGATC 2 cut(s) 270, 329
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 2 cut(s) 76, 442
AcuI CTGAAG 3 cut(s) 76, 103, 288
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
AlwI GGATC 2 cut(s) 270, 329
Aor13HI TCCGGA 1 cut(s) 282
AoxI GGCC 2 cut(s) 44, 300
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 76, 442
AspLEI GCGC 4 cut(s) 103, 108, 110, 165
AspS9I GGNCC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 423
BceAI ACGGC 1 cut(s) 31
BglII AGATCT 1 cut(s) 313
BisI GCNGC 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 300
BmsI GCATC 1 cut(s) 239
Bpu1102I GCTNAGC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 47, 296
BsaWI WCCGGW 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 47, 296
BseGI GGATG 1 cut(s) 434
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 181
BsePI GCGCGC 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 90
Bsh1236I CGCG 2 cut(s) 101, 108
BshFI GGCC 2 cut(s) 46, 302
BsiSI CCGG 1 cut(s) 283
BsnI GGCC 2 cut(s) 46, 302
Bsp13I TCCGGA 1 cut(s) 282
Bsp143I GATC 4 cut(s) 241, 275, 313, 334
Bsp1720I GCTNAGC 1 cut(s) 166
BspANI GGCC 2 cut(s) 46, 302
BspCNI CTCAG 1 cut(s) 179
BspEI TCCGGA 1 cut(s) 282
BspFNI CGCG 2 cut(s) 101, 108
BspPI GGATC 2 cut(s) 270, 329
BspQI GCTCTTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 47, 296
BssHII GCGCGC 1 cut(s) 106
BssMI GATC 4 cut(s) 241, 275, 313, 334
BssT1I CCWWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 5 cut(s) 47, 72, 95, 122, 264
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 166, 376
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 434
BstFNI CGCG 2 cut(s) 101, 108
BstHHI GCGC 4 cut(s) 103, 108, 110, 165
BstKTI GATC 4 cut(s) 244, 278, 316, 337
BstMBI GATC 4 cut(s) 241, 275, 313, 334
BstMWI GCNNNNNNNGC 2 cut(s) 107, 236
BstUI CGCG 2 cut(s) 101, 108
BstV1I GCAGC 1 cut(s) 90
BstX2I RGATCY 2 cut(s) 275, 313
BstYI RGATCY 2 cut(s) 275, 313
BsuRI GGCC 2 cut(s) 46, 302
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 4 cut(s) 103, 108, 110, 165
Cfr13I GGNCC 1 cut(s) 300
CviAII CATG 2 cut(s) 20, 363
CviJI RGCY 5 cut(s) 46, 96, 192, 302, 414
CviKI_1 RGCY 5 cut(s) 46, 96, 192, 302, 414
DdeI CTNAG 2 cut(s) 166, 376
DpnI GATC 4 cut(s) 243, 277, 315, 336
DpnII GATC 4 cut(s) 241, 275, 313, 334
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 5 cut(s) 47, 72, 95, 122, 264
EarI CTCTTC 5 cut(s) 47, 72, 95, 122, 264
Eco130I CCWWGG 1 cut(s) 296
Eco57I CTGAAG 3 cut(s) 76, 103, 288
EcoT14I CCWWGG 1 cut(s) 296
EcoT22I ATGCAT 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 2 cut(s) 23, 366
FaiI YATR 9 cut(s) 21, 63, 83, 327, 357, 359, 364, 368, 382
FatI CATG 2 cut(s) 19, 362
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 104
GlaI GCGC 4 cut(s) 102, 107, 109, 164
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 2 cut(s) 46, 302
HapII CCGG 1 cut(s) 283
HhaI GCGC 4 cut(s) 103, 108, 110, 165
Hin1II CATG 2 cut(s) 23, 366
Hin6I GCGC 4 cut(s) 101, 106, 108, 163
HinP1I GCGC 4 cut(s) 101, 106, 108, 163
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 2 cut(s) 57, 286
HpaII CCGG 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 5 cut(s) 10, 235, 268, 313, 441
Hpy188III TCNNGA 4 cut(s) 224, 245, 283, 426
Hpy8I GTNNAC 1 cut(s) 293
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 4 cut(s) 34, 197, 247, 348
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 2 cut(s) 366, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 236
HpyF3I CTNAG 2 cut(s) 166, 376
Hsp92II CATG 2 cut(s) 23, 366
HspAI GCGC 4 cut(s) 101, 106, 108, 163
Kpn2I TCCGGA 1 cut(s) 282
Kzo9I GATC 4 cut(s) 241, 275, 313, 334
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 4 cut(s) 162, 230, 296, 411
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 122
MalI GATC 4 cut(s) 243, 277, 315, 336
MboI GATC 4 cut(s) 241, 275, 313, 334
MboII GAAGA 5 cut(s) 59, 64, 82, 109, 281
MflI RGATCY 2 cut(s) 275, 313
MluCI AATT 2 cut(s) 76, 442
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 5 cut(s) 96, 107, 125, 165, 274
Mph1103I ATGCAT 1 cut(s) 368
MroI TCCGGA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 1 cut(s) 283
MteI GCGCNGCGC 1 cut(s) 104
MvnI CGCG 2 cut(s) 101, 108
MwoI GCNNNNNNNGC 2 cut(s) 107, 236
NdeII GATC 4 cut(s) 241, 275, 313, 334
NlaIII CATG 2 cut(s) 23, 366
NsiI ATGCAT 1 cut(s) 368
PauI GCGCGC 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 300
PsuI RGATCY 2 cut(s) 275, 313
PteI GCGCGC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 408
SalI GTCGAC 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 72
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 4 cut(s) 241, 275, 313, 334
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 1 cut(s) 66
SetI ASST 4 cut(s) 88, 194, 208, 298
SfaNI GCATC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 2 cut(s) 76, 442
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 4 cut(s) 27, 223, 292, 333
TasI AATT 2 cut(s) 76, 442
TfiI GAWTC 1 cut(s) 286
TscAI CASTG 1 cut(s) 181
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 5 cut(s) 8, 17, 70, 361, 392
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 181
XapI RAATTY 2 cut(s) 76, 442
XmiI GTMKAC 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.