Rroxscaffold_3G00258350

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000095
Physical Location & Seq
Reverse (-)
52681418 .. 52684017
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258350.1

Sequence Viewer

Length: 1428 bp
ATGGCTGAACCAAGCAACAAGGGTGGTTACAATTTGAGAAAGAGAAGGAAAGCATGTGCTTTGGTGGATAGAATCAGTGGAATGCCGGATGAAATTCTAGTGAGTATATTGTCTTTGTTGCCGCTGAAGGAAGCACAGGCTACTTGTATCTTGTCTAGGAGATGGCATTATGTGTGGGCGTCTCTCATGACTCTCAACTTTGACACCAACAAAAGGTTGAGCACCTTGAAGGGTCTGAAGCCGAAGGAACGAGACCAGGGCCTTATCAAGAGGTATGCTAAGTGGGTCAACAGCGTGGTTGAACAGCATAGAGCCCCATGCATTGACCAGTTCCGTGTCTCGTTTTATCTAGACAAGACTTTTTCCAGTTCTATTGATAAGTGGGTTGAGTTTGCACTGAAAAAGGGTGTTCAAATGCTGGAGCTGAATTTGTTAGAATATGTCTATTATTGCAAGATCAAACCGGGATATCCTTTTCCCCAGCGACTTTTGGGTCTCAACAGAGGAGAAGGTGAACAAGAGTCTGCTTGGAAGCACTTGTGTCGTGATGGTCCCAGTCGTCAACCCTGCGTGTGCGTTGGCTTCAAGTCACTCAGAGTTCTTACCTTGGAATGTGTTGACATCTCTGGAGAGGTTCTCGAGTACTTTTTGCGCAGTTGTCCCGTTCTGGAAAGAGTTTCGGTGTATGGCTCCTCAACGTTGGTGTATCTACGAGTTGTCGGTCCATCCATTGCATTGAAGCACTTAGTGATACAAAGATGTAGCAACGTCGTAGGCATTGACATAGTTGATGCAGATGTCATTTCATTTACTTATGATGGTGGGGAGGGAATACATTTGCGTCTTGAGAATGTACCGCATCTTGTTGAGGTATCCATTTATGAGCACCGTGAATATTACTCTTTTTTAAGCATTGATGTTCTCTTTGCCAGCCTTTCCTCCTGTGTTTCTCAGCTGGAGATTCTGAAAATGAATAATACGATACTGTACTACAGGGAGAGTTATATGGTTCCCTTGTTACCAAATCTCAAGCTTTTGGGATTATCCTTTAAAGATGATGAGGCACTAATGCAATTGGCTTCCTTCTTGAAATCATCTCCTTGCGTTGAAAGGCTTGTGATACACTTGCACTACTCAATATCAAATCGAAAAAAATGCCACTTTAAGAATAAGAAAGCTGCCAAATGCTCCCATGCAGATCTCAAGGCCGTGAAGTTGGTAGGTTATGATGGCAGCACGCGCGAAGATGAAATTGTCAAGTACTTGACAAAAACTGCGATCAACTTGGAACAAATTGTTATCGATCCTGCCCGGAATTGGCTTTATAGAATTCCAAAAAGGAAGGATGCAATGAGACGAGAAGAACAAGTAAGAGCTCATTTTCGGCAGCTCAAAGTGCCTTCAAATATAGACTTTGTATGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

475

Amino Acids

54.55

Weight (kDa)

9.19

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 62 2.4e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 109 - 441 5.2e-28 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 125 - 374 9.7e-15 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 492
Acc16I TGCGCA 1 cut(s) 653
AccII CGCG 2 cut(s) 1240, 1242
AciI CCGC 2 cut(s) 122, 857
AclI AACGTT 1 cut(s) 698
AclWI GGATC 1 cut(s) 1298
AcsI RAATTY 3 cut(s) 93, 427, 1329
AcuI CTGAAG 2 cut(s) 146, 257
AcyI GRCGYC 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 748
AfaI GTAC 4 cut(s) 644, 855, 989, 1262
AfiI CCNNNNNNNGG 2 cut(s) 213, 1317
AgsI TTSAA 8 cut(s) 229, 302, 413, 586, 739, 1090, 1109, 1404
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 6 cut(s) 424, 955, 1033, 1178, 1376, 1390
AluI AGCT 6 cut(s) 424, 955, 1033, 1178, 1376, 1390
Alw21I GWGCWC 3 cut(s) 224, 888, 1378
Alw26I GTCTC 5 cut(s) 186, 246, 343, 500, 1348
AlwI GGATC 1 cut(s) 1298
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 2 cut(s) 259, 1206
ApeKI GCWGC 3 cut(s) 1178, 1233, 1387
ApoI RAATTY 3 cut(s) 93, 427, 1329
AspLEI GCGC 2 cut(s) 654, 1242
AspS9I GGNCC 3 cut(s) 259, 551, 722
AsuC2I CCSGG 2 cut(s) 465, 1312
AsuHPI GGTGA 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 2 cut(s) 551, 722
BanII GRGCYC 2 cut(s) 316, 1378
Bbv12I GWGCWC 3 cut(s) 224, 888, 1378
BbvI GCAGC 3 cut(s) 1165, 1245, 1399
BccI CCATC 5 cut(s) 156, 542, 733, 812, 1223
BceAI ACGGC 1 cut(s) 1193
BcgI CGANNNNNNTGC 4 cut(s) 524, 558, 1137, 1171
BciT130I CCWGG 1 cut(s) 257
BciVI GTATCC 1 cut(s) 883
BcnI CCSGG 2 cut(s) 465, 1312
BcoDI GTCTC 5 cut(s) 186, 246, 343, 500, 1348
BfaI CTAG 3 cut(s) 98, 156, 350
BfmI CTRYAG 1 cut(s) 991
BfuI GTATCC 1 cut(s) 883
BglII AGATCT 1 cut(s) 1198
BisI GCNGC 4 cut(s) 122, 1179, 1234, 1388
BlsI GCNGC 4 cut(s) 123, 1180, 1235, 1389
BmcAI AGTACT 2 cut(s) 644, 1262
Bme1390I CCNGG 3 cut(s) 257, 465, 1312
Bme18I GGWCC 2 cut(s) 551, 722
BmeT110I CYCGRG 1 cut(s) 638
BmgT120I GGNCC 3 cut(s) 259, 551, 722
BmiI GGNNCC 3 cut(s) 553, 691, 1011
BmrFI CCNGG 3 cut(s) 257, 465, 1312
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 3 cut(s) 781, 868, 1336
BmuI ACTGGG 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 621, 653
BpmI CTGGAG 3 cut(s) 440, 648, 977
BpuEI CTTGAG 3 cut(s) 866, 1013, 1187
BpuMI CCSGG 2 cut(s) 465, 1312
Bsa29I ATCGAT 1 cut(s) 1302
BsaHI GRCGYC 1 cut(s) 179
BsaI GGTCTC 2 cut(s) 246, 500
BsaJI CCNNGG 2 cut(s) 256, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 1317
Bse1I ACTGG 3 cut(s) 328, 366, 555
Bse3DI GCAATG 2 cut(s) 729, 1356
BseBI CCWGG 1 cut(s) 257
BseCI ATCGAT 1 cut(s) 1302
BseDI CCNNGG 2 cut(s) 256, 606
BseGI GGATG 3 cut(s) 94, 725, 1351
BseLI CCNNNNNNNGG 2 cut(s) 213, 1317
BseMI GCAATG 2 cut(s) 729, 1356
BseMII CTCAG 2 cut(s) 607, 965
BseNI ACTGG 3 cut(s) 328, 366, 555
BseRI GAGGAG 2 cut(s) 519, 682
BseXI GCAGC 3 cut(s) 1165, 1245, 1399
BseYI CCCAGC 1 cut(s) 480
Bsh1236I CGCG 2 cut(s) 1240, 1242
BshFI GGCC 2 cut(s) 261, 1208
BshVI ATCGAT 1 cut(s) 1302
BsiHKAI GWGCWC 3 cut(s) 224, 888, 1378
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 3 cut(s) 86, 464, 1312
BslFI GGGAC 2 cut(s) 537, 645
BslI CCNNNNNNNGG 2 cut(s) 213, 1317
BsmAI GTCTC 5 cut(s) 186, 246, 343, 500, 1348
BsmBI CGTCTC 2 cut(s) 186, 1348
BsmFI GGGAC 2 cut(s) 537, 645
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 2 cut(s) 261, 1208
Bso31I GGTCTC 2 cut(s) 246, 500
BsoBI CYCGRG 1 cut(s) 638
Bsp1286I GDGCHC 4 cut(s) 224, 316, 888, 1378
Bsp143I GATC 4 cut(s) 456, 1198, 1278, 1303
BspACI CCGC 2 cut(s) 122, 857
BspANI GGCC 2 cut(s) 261, 1208
BspCNI CTCAG 2 cut(s) 606, 964
BspDI ATCGAT 1 cut(s) 1302
BspFNI CGCG 2 cut(s) 1240, 1242
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 553, 691, 1011
BspPI GGATC 1 cut(s) 1298
BspTNI GGTCTC 2 cut(s) 246, 500
BsrDI GCAATG 2 cut(s) 729, 1356
BsrI ACTGG 3 cut(s) 328, 366, 555
BssECI CCNNGG 2 cut(s) 256, 606
BssMI GATC 4 cut(s) 456, 1198, 1278, 1303
BssNI GRCGYC 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 890, 987
BstACI GRCGYC 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 931, 1238
BstDEI CTNAG 4 cut(s) 279, 593, 745, 951
BstF5I GGATG 3 cut(s) 94, 725, 1351
BstFNI CGCG 2 cut(s) 1240, 1242
BstHHI GCGC 2 cut(s) 654, 1242
BstKTI GATC 4 cut(s) 459, 1201, 1281, 1306
BstMAI GTCTC 5 cut(s) 186, 246, 343, 500, 1348
BstMBI GATC 4 cut(s) 456, 1198, 1278, 1303
BstMWI GCNNNNNNNGC 2 cut(s) 1239, 1396
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 255, 463, 1310
BstSFI CTRYAG 1 cut(s) 991
BstUI CGCG 2 cut(s) 1240, 1242
BstV1I GCAGC 3 cut(s) 1165, 1245, 1399
BstX2I RGATCY 1 cut(s) 1198
BstYI RGATCY 1 cut(s) 1198
Bsu15I ATCGAT 1 cut(s) 1302
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 2 cut(s) 261, 1208
BsuTUI ATCGAT 1 cut(s) 1302
BtsCI GGATG 3 cut(s) 94, 725, 1351
BtsIMutI CAGTG 2 cut(s) 82, 395
Cac8I GCNNGC 2 cut(s) 931, 1238
CciI TCATGA 1 cut(s) 186
CfoI GCGC 2 cut(s) 654, 1242
Cfr13I GGNCC 3 cut(s) 259, 551, 722
ClaI ATCGAT 1 cut(s) 1302
CseI GACGC 2 cut(s) 168, 830
Csp6I GTAC 4 cut(s) 643, 854, 988, 1261
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 4 cut(s) 54, 187, 318, 1193
CviQI GTAC 4 cut(s) 643, 854, 988, 1261
DdeI CTNAG 4 cut(s) 279, 593, 745, 951
DpnI GATC 4 cut(s) 458, 1200, 1280, 1305
DpnII GATC 4 cut(s) 456, 1198, 1278, 1303
DraI TTTAAA 1 cut(s) 1051
DraIII CACNNNGTG 1 cut(s) 748
DrdI GACNNNNNNGTC 1 cut(s) 492
DseDI GACNNNNNNGTC 1 cut(s) 492
Ecl136II GAGCTC 1 cut(s) 1376
Eco130I CCWWGG 1 cut(s) 606
Eco24I GRGCYC 2 cut(s) 316, 1378
Eco31I GGTCTC 2 cut(s) 246, 500
Eco32I GATATC 1 cut(s) 470
Eco47I GGWCC 2 cut(s) 551, 722
Eco53kI GAGCTC 1 cut(s) 1376
Eco57I CTGAAG 2 cut(s) 146, 257
Eco88I CYCGRG 1 cut(s) 638
EcoICRI GAGCTC 1 cut(s) 1376
EcoO109I RGGNCCY 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 1329
EcoRII CCWGG 1 cut(s) 255
EcoRV GATATC 1 cut(s) 470
EcoT14I CCWWGG 1 cut(s) 606
EcoT22I ATGCAT 1 cut(s) 323
EcoT38I GRGCYC 2 cut(s) 316, 1378
ErhI CCWWGG 1 cut(s) 606
Esp3I CGTCTC 2 cut(s) 186, 1348
FaeI CATG 4 cut(s) 57, 190, 321, 1196
FaqI GGGAC 2 cut(s) 537, 645
FatI CATG 4 cut(s) 53, 186, 317, 1192
Fnu4HI GCNGC 4 cut(s) 122, 1179, 1234, 1388
FokI GGATG 3 cut(s) 101, 712, 1358
FriOI GRGCYC 2 cut(s) 316, 1378
Fsp4HI GCNGC 4 cut(s) 122, 1179, 1234, 1388
FspBI CTAG 3 cut(s) 98, 156, 350
FspI TGCGCA 1 cut(s) 653
GlaI GCGC 2 cut(s) 653, 1241
GluI GCNGC 4 cut(s) 122, 1179, 1234, 1388
GsaI CCCAGC 1 cut(s) 484
GsuI CTGGAG 3 cut(s) 440, 648, 977
HaeIII GGCC 2 cut(s) 261, 1208
HapII CCGG 3 cut(s) 86, 464, 1312
HgaI GACGC 2 cut(s) 168, 830
HhaI GCGC 2 cut(s) 654, 1242
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 4 cut(s) 57, 190, 321, 1196
Hin6I GCGC 2 cut(s) 652, 1240
HinP1I GCGC 2 cut(s) 652, 1240
HincII GTYRAC 3 cut(s) 289, 563, 619
HindII GTYRAC 3 cut(s) 289, 563, 619
HindIII AAGCTT 1 cut(s) 1031
HinfI GANTC 4 cut(s) 72, 190, 521, 961
HpaII CCGG 3 cut(s) 86, 464, 1312
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 4 cut(s) 289, 515, 563, 619
Hpy188I TCNGA 3 cut(s) 237, 596, 966
Hpy188III TCNNGA 9 cut(s) 187, 268, 350, 545, 627, 638, 668, 845, 1087
Hpy8I GTNNAC 4 cut(s) 289, 515, 563, 619
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 8 cut(s) 39, 121, 223, 238, 503, 1093, 1336, 1410
HpyCH4III ACNGT 2 cut(s) 890, 987
HpyCH4IV ACGT 2 cut(s) 698, 768
HpyCH4V TGCA 9 cut(s) 321, 395, 453, 734, 794, 1072, 1129, 1196, 1349
HpyF10VI GCNNNNNNNGC 2 cut(s) 1239, 1396
HpyF3I CTNAG 4 cut(s) 279, 593, 745, 951
HpySE526I ACGT 2 cut(s) 698, 768
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 4 cut(s) 57, 190, 321, 1196
HspAI GCGC 2 cut(s) 652, 1240
Kzo9I GATC 4 cut(s) 456, 1198, 1278, 1303
LmnI GCTCC 3 cut(s) 421, 695, 1193
Lsp1109I GCAGC 3 cut(s) 1165, 1245, 1399
LweI GCATC 3 cut(s) 781, 868, 1336
MaeI CTAG 3 cut(s) 98, 156, 350
MaeII ACGT 2 cut(s) 698, 768
MaeIII GTNAC 3 cut(s) 26, 588, 1017
MalI GATC 4 cut(s) 458, 1200, 1280, 1305
MboI GATC 4 cut(s) 456, 1198, 1278, 1303
MboII GAAGA 2 cut(s) 1256, 1373
MfeI CAATTG 1 cut(s) 1073
MflI RGATCY 1 cut(s) 1198
MhlI GDGCHC 4 cut(s) 224, 316, 888, 1378
MluCI AATT 8 cut(s) 31, 93, 427, 1073, 1251, 1293, 1315, 1329
MlyI GAGTC 2 cut(s) 184, 530
MnlI CCTC 8 cut(s) 264, 497, 625, 703, 820, 862, 949, 1054
Mph1103I ATGCAT 1 cut(s) 323
MseI TTAA 3 cut(s) 908, 1050, 1164
MspA1I CMGCKG 2 cut(s) 124, 955
MspI CCGG 3 cut(s) 86, 464, 1312
MspR9I CCNGG 3 cut(s) 257, 465, 1312
MunI CAATTG 1 cut(s) 1073
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 257
MvnI CGCG 2 cut(s) 1240, 1242
MwoI GCNNNNNNNGC 2 cut(s) 1239, 1396
NciI CCSGG 2 cut(s) 465, 1312
NdeII GATC 4 cut(s) 456, 1198, 1278, 1303
NlaIII CATG 4 cut(s) 57, 190, 321, 1196
NlaIV GGNNCC 3 cut(s) 553, 691, 1011
NmuCI GTSAC 1 cut(s) 588
NsbI TGCGCA 1 cut(s) 653
NsiI ATGCAT 1 cut(s) 323
NspI RCATGY 1 cut(s) 57
PaeR7I CTCGAG 1 cut(s) 638
PagI TCATGA 1 cut(s) 186
PctI GAATGC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 72, 961
PkrI GCNGC 4 cut(s) 123, 1180, 1235, 1389
PleI GAGTC 2 cut(s) 184, 529
PpsI GAGTC 2 cut(s) 184, 529
Psp124BI GAGCTC 1 cut(s) 1378
Psp1406I AACGTT 1 cut(s) 698
Psp6I CCWGG 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 480
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 3 cut(s) 553, 691, 1011
PspPI GGNCC 3 cut(s) 259, 551, 722
PsuI RGATCY 1 cut(s) 1198
PvuII CAGCTG 1 cut(s) 955
RsaI GTAC 4 cut(s) 644, 855, 989, 1262
RsaNI GTAC 4 cut(s) 643, 854, 988, 1261
SacI GAGCTC 1 cut(s) 1378
SaqAI TTAA 3 cut(s) 908, 1050, 1164
SatI GCNGC 4 cut(s) 122, 1179, 1234, 1388
Sau3AI GATC 4 cut(s) 456, 1198, 1278, 1303
Sau96I GGNCC 3 cut(s) 259, 551, 722
ScaI AGTACT 2 cut(s) 644, 1262
SchI GAGTC 2 cut(s) 184, 530
ScrFI CCNGG 3 cut(s) 257, 465, 1312
SduI GDGCHC 4 cut(s) 224, 316, 888, 1378
SfaNI GCATC 3 cut(s) 781, 868, 1336
SfcI CTRYAG 1 cut(s) 991
Sfr274I CTCGAG 1 cut(s) 638
SinI GGWCC 2 cut(s) 551, 722
SlaI CTCGAG 1 cut(s) 638
SmlI CTYRAG 4 cut(s) 638, 845, 1028, 1202
SmoI CTYRAG 4 cut(s) 638, 845, 1028, 1202
Sse9I AATT 8 cut(s) 31, 93, 427, 1073, 1251, 1293, 1315, 1329
SsiI CCGC 2 cut(s) 122, 857
SspI AATATT 1 cut(s) 896
SspMI CTAG 3 cut(s) 98, 156, 350
SstI GAGCTC 1 cut(s) 1378
StyD4I CCNGG 3 cut(s) 255, 463, 1310
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 2 cut(s) 890, 987
TaiI ACGT 2 cut(s) 701, 771
TaqI TCGA 3 cut(s) 639, 1147, 1302
TaqII GACCGA 1 cut(s) 710
TasI AATT 8 cut(s) 31, 93, 427, 1073, 1251, 1293, 1315, 1329
TatI WGTACW 3 cut(s) 642, 987, 1260
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 2 cut(s) 72, 961
Tru1I TTAA 3 cut(s) 908, 1050, 1164
Tru9I TTAA 3 cut(s) 908, 1050, 1164
TscAI CASTG 2 cut(s) 82, 402
TseFI GTSAC 1 cut(s) 588
TseI GCWGC 3 cut(s) 1178, 1233, 1387
Tsp45I GTSAC 1 cut(s) 588
TspDTI ATGAA 4 cut(s) 105, 795, 986, 1263
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 2 cut(s) 82, 402
VpaK11BI GGWCC 2 cut(s) 551, 722
XapI RAATTY 3 cut(s) 93, 427, 1329
XbaI TCTAGA 1 cut(s) 349
XceI RCATGY 1 cut(s) 57
XhoI CTCGAG 1 cut(s) 638
XspI CTAG 3 cut(s) 98, 156, 350
ZrmI AGTACT 2 cut(s) 644, 1262
Zsp2I ATGCAT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.