Rmu_co8446009.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8446009.1
OG0000095
Physical Location & Seq
Reverse (-)
1 .. 1013
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8446009.1_g000001.1.cds

Sequence Viewer

Length: 882 bp
atgtgggcatccactaaaaatctcaattttgatgctgatgaaactgtacggcgttattattgggagcacaaccaagaactcagagaccaggaaagctctaaatatgtagattgggtcaatcatgtggtggaacagcatagagagcaggaggacttggaacaatttagggtttgcttccttggtctagataaccgttttactagttcaattgataaatggattcagtttgcaatgaaaaagagagttcaagttctggtgttggattttgtgacgagattatatgatgcaaaacattacacattttcaaactacctagaaacgtcctctgaacactttaactttgaatccctcaaagttcttcatttggaatgcgttaatgtgactggagatgttcttgagtgcatgttgcgaaactgcccttttcttgaacaagtatcagtgtattatgccaacaatttggttgagttaagcgttgtcgatccatccattgcactcaagtatttggagataagatattgtggtgacatcaaaaggattcagattcatgatgcaaaacttgtttcattgtcttatagtggatgtcccatagaattggatctcagtaatgtgcctttgctgattgaggtatccatttgttatgatgggtttaccgatgaatccatgagacttgccttcacccatctttcttgctgcataaatcagctacagactctcatgctggatatccccatgttcgtgcaggtccaccaaaagaatttccctgtactaccaaatctcaagaatttagaagtaagagtctgcgcagatgcttgccggaatactcttcctgtgttaacctctttcatgaaggcatttcctaatttgcagaggcttgttttgaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

294

Amino Acids

34.43

Weight (kDa)

5.5

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 802
Acc36I ACCTGC 1 cut(s) 730
AclWI GGATC 2 cut(s) 473, 603
AcsI RAATTY 2 cut(s) 754, 781
AfaI GTAC 2 cut(s) 48, 765
AgsI TTSAA 6 cut(s) 207, 248, 306, 344, 428, 880
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 96, 703
AluI AGCT 2 cut(s) 96, 703
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 78, 658
AlwI GGATC 2 cut(s) 473, 603
ApeKI GCWGC 1 cut(s) 690
ApoI RAATTY 2 cut(s) 754, 781
AspLEI GCGC 1 cut(s) 803
AspS9I GGNCC 1 cut(s) 742
AsuHPI GGTGA 2 cut(s) 533, 667
AvaII GGWCC 1 cut(s) 742
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 677
BccI CCATC 3 cut(s) 490, 635, 687
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 89
BciVI GTATCC 1 cut(s) 637
BcoDI GTCTC 2 cut(s) 78, 658
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 3 cut(s) 185, 201, 314
BfmI CTRYAG 1 cut(s) 704
BfuAI ACCTGC 1 cut(s) 730
BfuI GTATCC 1 cut(s) 637
BisI GCNGC 1 cut(s) 691
BlsI GCNGC 1 cut(s) 692
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 742
BmgT120I GGNCC 1 cut(s) 742
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 5 cut(s) 17, 22, 274, 538, 796
BpmI CTGGAG 1 cut(s) 405
BpuEI CTTGAG 3 cut(s) 416, 479, 761
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 388
Bse3DI GCAATG 2 cut(s) 237, 486
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 3 cut(s) 8, 482, 584
BseMI GCAATG 2 cut(s) 237, 486
BseMII CTCAG 2 cut(s) 94, 613
BseNI ACTGG 1 cut(s) 388
BseXI GCAGC 1 cut(s) 677
BsgI GTGCAG 1 cut(s) 758
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 814
BslFI GGGAC 1 cut(s) 567
BsmAI GTCTC 2 cut(s) 78, 658
BsmFI GGGAC 1 cut(s) 567
BsmI GAATGC 1 cut(s) 374
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 478, 595
BspCNI CTCAG 2 cut(s) 93, 612
BspHI TCATGA 2 cut(s) 544, 843
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 2 cut(s) 473, 603
BspTNI GGTCTC 1 cut(s) 78
BsrDI GCAATG 2 cut(s) 237, 486
BsrI ACTGG 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 2 cut(s) 478, 595
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 46, 194
Bst6I CTCTTC 1 cut(s) 828
BstC8I GCNNGC 1 cut(s) 811
BstDEI CTNAG 2 cut(s) 80, 599
BstF5I GGATG 3 cut(s) 8, 482, 584
BstHHI GCGC 1 cut(s) 803
BstKTI GATC 2 cut(s) 481, 598
BstMAI GTCTC 2 cut(s) 78, 658
BstMBI GATC 2 cut(s) 478, 595
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 704
BstV1I GCAGC 1 cut(s) 677
BstX2I RGATCY 1 cut(s) 595
BstXI CCANNNNNNTGG 2 cut(s) 457, 592
BstYI RGATCY 1 cut(s) 595
BsuI GTATCC 1 cut(s) 637
BtsCI GGATG 3 cut(s) 8, 482, 584
BtsIMutI CAGTG 1 cut(s) 444
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 1 cut(s) 811
CciI TCATGA 2 cut(s) 544, 843
CfoI GCGC 1 cut(s) 803
Cfr13I GGNCC 1 cut(s) 742
Csp6I GTAC 2 cut(s) 47, 764
CviAII CATG 7 cut(s) 122, 403, 545, 661, 715, 730, 844
CviJI RGCY 3 cut(s) 96, 703, 871
CviKI_1 RGCY 3 cut(s) 96, 703, 871
CviQI GTAC 2 cut(s) 47, 764
DdeI CTNAG 2 cut(s) 80, 599
DpnI GATC 2 cut(s) 480, 597
DpnII GATC 2 cut(s) 478, 595
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Eco130I CCWWGG 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 742
EcoRII CCWGG 1 cut(s) 87
EcoRV GATATC 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 7 cut(s) 125, 406, 548, 664, 718, 733, 847
FaqI GGGAC 1 cut(s) 567
FatI CATG 7 cut(s) 121, 402, 544, 660, 714, 729, 843
Fnu4HI GCNGC 1 cut(s) 691
FokI GGATG 2 cut(s) 469, 591
Fsp4HI GCNGC 1 cut(s) 691
FspBI CTAG 3 cut(s) 185, 201, 314
FspI TGCGCA 1 cut(s) 802
GlaI GCGC 1 cut(s) 802
GluI GCNGC 1 cut(s) 691
GsuI CTGGAG 1 cut(s) 405
HapII CCGG 1 cut(s) 814
HhaI GCGC 1 cut(s) 803
Hin1II CATG 7 cut(s) 125, 406, 548, 664, 718, 733, 847
Hin6I GCGC 1 cut(s) 801
HinP1I GCGC 1 cut(s) 801
HincII GTYRAC 1 cut(s) 834
HindII GTYRAC 1 cut(s) 834
HinfI GANTC 7 cut(s) 220, 344, 535, 541, 656, 709, 795
HpaI GTTAAC 1 cut(s) 834
HpaII CCGG 1 cut(s) 814
HphI GGTGA 2 cut(s) 533, 667
Hpy166II GTNNAC 3 cut(s) 648, 745, 834
Hpy188I TCNGA 3 cut(s) 83, 328, 540
Hpy188III TCNNGA 6 cut(s) 185, 395, 425, 545, 778, 844
Hpy8I GTNNAC 3 cut(s) 648, 745, 834
HpyAV CCTTC 2 cut(s) 682, 841
HpyCH4III ACNGT 2 cut(s) 46, 194
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 8 cut(s) 230, 287, 402, 491, 551, 693, 739, 865
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 2 cut(s) 80, 599
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 7 cut(s) 125, 406, 548, 664, 718, 733, 847
HspAI GCGC 1 cut(s) 801
KspAI GTTAAC 1 cut(s) 834
Kzo9I GATC 2 cut(s) 478, 595
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 677
LweI GCATC 5 cut(s) 17, 22, 274, 538, 796
MaeI CTAG 3 cut(s) 185, 201, 314
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 3 cut(s) 268, 379, 521
MalI GATC 2 cut(s) 480, 597
MboI GATC 2 cut(s) 478, 595
MboII GAAGA 2 cut(s) 350, 815
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 8 cut(s) 25, 161, 207, 454, 590, 754, 781, 859
MlyI GAGTC 2 cut(s) 703, 804
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 6 cut(s) 142, 334, 359, 616, 847, 861
MseI TTAA 4 cut(s) 336, 375, 467, 833
MslI CAYNNNNRTG 1 cut(s) 734
MspI CCGG 1 cut(s) 814
MspR9I CCNGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 2 cut(s) 478, 595
NlaIII CATG 7 cut(s) 125, 406, 548, 664, 718, 733, 847
NmuCI GTSAC 3 cut(s) 268, 379, 521
NsbI TGCGCA 1 cut(s) 802
NspI RCATGY 1 cut(s) 406
PagI TCATGA 2 cut(s) 544, 843
PctI GAATGC 1 cut(s) 374
PfeI GAWTC 5 cut(s) 220, 344, 535, 541, 656
PkrI GCNGC 1 cut(s) 692
PleI GAGTC 2 cut(s) 703, 803
PpsI GAGTC 2 cut(s) 703, 803
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspPI GGNCC 1 cut(s) 742
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 2 cut(s) 48, 765
RsaNI GTAC 2 cut(s) 47, 764
RseI CAYNNNNRTG 1 cut(s) 734
SaqAI TTAA 4 cut(s) 336, 375, 467, 833
SatI GCNGC 1 cut(s) 691
Sau3AI GATC 2 cut(s) 478, 595
Sau96I GGNCC 1 cut(s) 742
SchI GAGTC 2 cut(s) 703, 804
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 69
SetI ASST 7 cut(s) 98, 315, 323, 627, 705, 744, 839
SfaNI GCATC 5 cut(s) 17, 22, 274, 538, 796
SfcI CTRYAG 1 cut(s) 704
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 3 cut(s) 395, 494, 776
SmoI CTYRAG 3 cut(s) 395, 494, 776
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 8 cut(s) 25, 161, 207, 454, 590, 754, 781, 859
SspMI CTAG 3 cut(s) 185, 201, 314
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 46, 194
TaiI ACGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 477
TasI AATT 8 cut(s) 25, 161, 207, 454, 590, 754, 781, 859
TatI WGTACW 1 cut(s) 763
TfiI GAWTC 5 cut(s) 220, 344, 535, 541, 656
Tru1I TTAA 4 cut(s) 336, 375, 467, 833
Tru9I TTAA 4 cut(s) 336, 375, 467, 833
TscAI CASTG 1 cut(s) 444
TseFI GTSAC 3 cut(s) 268, 379, 521
TseI GCWGC 1 cut(s) 690
Tsp45I GTSAC 3 cut(s) 268, 379, 521
TspDTI ATGAA 8 cut(s) 54, 248, 350, 533, 552, 669, 832, 860
TspRI CASTG 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 2 cut(s) 754, 781
XbaI TCTAGA 1 cut(s) 184
XceI RCATGY 1 cut(s) 406
XspI CTAG 3 cut(s) 185, 201, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.