Rh2BG047600

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
3386400 .. 3387889
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG047600.1

Sequence Viewer

Length: 1125 bp
ATGACTCTCAACTTTCAAGATGTTGACTTTTCTGTTGGTGATAGTTTTCACTGCTTCAAAGCCCTAGAACAAAAACTAAGAGATCAGAAAAGCCGTAAATATGTCAAATGGGTGGATCGTGTGTTGGAACAGCATGAAGGCCACAACATTGAACGATTCAGGGCTTTCTTCTTTCTAAATAGCAGGTTTAAGAATTCCATTGATAAGTGGATTGAGTTTGCAATGGAAAAGAGAGTTCAAGTCTCGGTGGAGAAGGTGACTCTTCAGCAGATTGGTTTCAAATCCCTCAAAGTTCTTCGTCTCCAGCAGATTGGTATGACTGATGAAGTTCTTGAGTACTTCTTGTCTAACTGTCCAGTTCTTGAGCGATTAACTGTGACAGTTGCAAAAAATTTGGTTTGTTTAAGAGTTGTTGGTCCGTCAATCTCATTGAAGTATTTGGCAATAAATGATTGTCCTAACCTCAAAAGCATTGAGATTTGCAAAGCAAATATTGTTTCATTTGTCTATAGGGGAGTTTGGATAGACCTGCTTATTAGTAACGTGCCCTTGCTGGTTGAGGTCCATATATCTGAGAGGGCTCTTGATAAAGTTGATTTTACAACACTTGCGTTCGACAAGCTTTCATGTTGTCTTTCTCATTTGGAGATTCTGAAGCTGAATATTTGGGGAGTGGTCTACAATCCGAATTATGACCTCCCTGTATTAGAAAATCTGAAGCATTTGGAATTAAATATTGAGACAAATTACCATTGGGCTCTTTATCATCTGTCTTCTTTCATGAAGGCTTGTCCTCACATCCAGAGACTTGTATTGAAGTTGGACTTCCGAACATACGTCGAAACAACAGTAAGCAAAGCAACAAAATTCCCTCATCATAGCCTCAAGGTTGCAGAAATTATTGGTTATCGTGGCCGTCAATGTGCTGTTGAACATGTCGTGTACTTGATAGAGAATACTGTTGGACTAGAGAAAATTATTATTGATCCTGTTCGGCGTTGGATTTGGCCCCTCGGAATGGACAGGGGAACTAAAGTATTGGATGAGGAAGTGAAGGCAAGAAAGCATGCTAAGAAACACCTTAAAGAAAGAGTTCCTTCTACTACTGAATTTGTATGCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

374

Amino Acids

43.59

Weight (kDa)

8.94

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 87 - 167 1.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 92 - 371 1.8e-30 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 174, 537
AccI GTMKAC 1 cut(s) 678
AclWI GGATC 2 cut(s) 123, 980
AcoI YGGCCR 1 cut(s) 913
AcsI RAATTY 4 cut(s) 193, 391, 866, 1109
AcuI CTGAAG 3 cut(s) 248, 674, 737
AfaI GTAC 2 cut(s) 338, 944
AfiI CCNNNNNNNGG 1 cut(s) 1018
AflIII ACRYGT 1 cut(s) 934
AgsI TTSAA 8 cut(s) 17, 58, 152, 239, 280, 433, 817, 932
AluBI AGCT 2 cut(s) 622, 658
AluI AGCT 2 cut(s) 622, 658
Alw26I GTCTC 4 cut(s) 247, 305, 734, 799
AlwI GGATC 2 cut(s) 123, 980
AoxI GGCC 3 cut(s) 139, 913, 1007
ApoI RAATTY 4 cut(s) 193, 391, 866, 1109
Asp700I GAANNNNTTC 1 cut(s) 1092
AspS9I GGNCC 3 cut(s) 416, 562, 1008
AsuHPI GGTGA 2 cut(s) 50, 268
AvaII GGWCC 2 cut(s) 416, 562
BaeGI GKGCMC 1 cut(s) 549
BanII GRGCYC 2 cut(s) 583, 760
BbsI GAAGAC 1 cut(s) 765
BceAI ACGGC 2 cut(s) 78, 900
BcoDI GTCTC 4 cut(s) 247, 305, 734, 799
BfaI CTAG 2 cut(s) 65, 968
BfmI CTRYAG 1 cut(s) 508
BfuAI ACCTGC 2 cut(s) 174, 537
BmcAI AGTACT 1 cut(s) 338
Bme18I GGWCC 2 cut(s) 416, 562
BmgT120I GGNCC 3 cut(s) 416, 562, 1008
BmiI GGNNCC 1 cut(s) 1010
BpiI GAAGAC 1 cut(s) 765
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 3 cut(s) 353, 383, 869
BsaJI CCNNGG 1 cut(s) 1012
Bsc4I CCNNNNNNNGG 1 cut(s) 1018
Bse1I ACTGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 1012
BseGI GGATG 2 cut(s) 798, 1048
BseLI CCNNNNNNNGG 1 cut(s) 1018
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 549
BshFI GGCC 3 cut(s) 141, 915, 1009
BslI CCNNNNNNNGG 1 cut(s) 1018
BsmAI GTCTC 4 cut(s) 247, 305, 734, 799
BsmBI CGTCTC 1 cut(s) 305
BsnI GGCC 3 cut(s) 141, 915, 1009
Bsp1286I GDGCHC 3 cut(s) 549, 583, 760
Bsp143I GATC 3 cut(s) 82, 115, 985
BspANI GGCC 3 cut(s) 141, 915, 1009
BspCNI CTCAG 1 cut(s) 565
BspHI TCATGA 1 cut(s) 780
BspLI GGNNCC 1 cut(s) 1010
BspMI ACCTGC 2 cut(s) 174, 537
BspPI GGATC 2 cut(s) 123, 980
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 1012
BssMI GATC 3 cut(s) 82, 115, 985
Bst4CI ACNGT 5 cut(s) 353, 376, 382, 850, 961
Bst6I CTCTTC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 1068
BstDEI CTNAG 3 cut(s) 77, 573, 1071
BstF5I GGATG 2 cut(s) 798, 1048
BstKTI GATC 3 cut(s) 85, 118, 988
BstMAI GTCTC 4 cut(s) 247, 305, 734, 799
BstMBI GATC 3 cut(s) 82, 115, 985
BstNSI RCATGY 2 cut(s) 938, 1070
BstSFI CTRYAG 1 cut(s) 508
BstSLI GKGCMC 1 cut(s) 549
BstV2I GAAGAC 1 cut(s) 765
BstXI CCANNNNNNTGG 1 cut(s) 311
BsuRI GGCC 3 cut(s) 141, 915, 1009
BtsCI GGATG 2 cut(s) 798, 1048
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 2 cut(s) 174, 537
Cac8I GCNNGC 1 cut(s) 1068
CciI TCATGA 1 cut(s) 780
Cfr13I GGNCC 3 cut(s) 416, 562, 1008
Csp6I GTAC 2 cut(s) 337, 943
CviAII CATG 5 cut(s) 134, 627, 781, 935, 1067
CviQI GTAC 2 cut(s) 337, 943
DdeI CTNAG 3 cut(s) 77, 573, 1071
DpnI GATC 3 cut(s) 84, 117, 987
DpnII GATC 3 cut(s) 82, 115, 985
EaeI YGGCCR 1 cut(s) 913
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco24I GRGCYC 2 cut(s) 583, 760
Eco47I GGWCC 2 cut(s) 416, 562
Eco57I CTGAAG 3 cut(s) 248, 674, 737
EcoRI GAATTC 1 cut(s) 193
EcoT38I GRGCYC 2 cut(s) 583, 760
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 5 cut(s) 137, 630, 784, 938, 1070
FalI AAGNNNNNCTT 4 cut(s) 809, 841, 1081, 1113
FatI CATG 5 cut(s) 133, 626, 780, 934, 1066
FblI GTMKAC 1 cut(s) 678
FokI GGATG 2 cut(s) 785, 1055
FriOI GRGCYC 2 cut(s) 583, 760
FspBI CTAG 2 cut(s) 65, 968
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 3 cut(s) 141, 915, 1009
Hin1II CATG 5 cut(s) 137, 630, 784, 938, 1070
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 4 cut(s) 4, 156, 259, 649
HphI GGTGA 2 cut(s) 50, 268
Hpy166II GTNNAC 3 cut(s) 25, 679, 943
Hpy188I TCNGA 7 cut(s) 87, 574, 654, 687, 717, 830, 1016
Hpy188III TCNNGA 6 cut(s) 17, 332, 362, 584, 781, 802
Hpy8I GTNNAC 3 cut(s) 25, 679, 943
Hpy99I CGWCG 1 cut(s) 842
HpyAV CCTTC 5 cut(s) 131, 247, 778, 1048, 1107
HpyCH4III ACNGT 5 cut(s) 353, 376, 382, 850, 961
HpyCH4IV ACGT 2 cut(s) 543, 837
HpyCH4V TGCA 4 cut(s) 221, 386, 483, 893
HpyF3I CTNAG 3 cut(s) 77, 573, 1071
HpySE526I ACGT 2 cut(s) 543, 837
Hsp92II CATG 5 cut(s) 137, 630, 784, 938, 1070
Kzo9I GATC 3 cut(s) 82, 115, 985
MaeI CTAG 2 cut(s) 65, 968
MaeII ACGT 2 cut(s) 543, 837
MaeIII GTNAC 3 cut(s) 256, 376, 539
MalI GATC 3 cut(s) 84, 117, 987
MboI GATC 3 cut(s) 82, 115, 985
MboII GAAGA 4 cut(s) 160, 254, 287, 765
MhlI GDGCHC 3 cut(s) 549, 583, 760
MluCI AATT 9 cut(s) 193, 391, 688, 728, 745, 866, 897, 975, 1109
MlyI GAGTC 1 cut(s) 253
MmeI TCCRAC 4 cut(s) 105, 801, 943, 980
MroXI GAANNNNTTC 1 cut(s) 1092
MseI TTAA 5 cut(s) 189, 371, 404, 731, 1083
NdeII GATC 3 cut(s) 82, 115, 985
NlaIII CATG 5 cut(s) 137, 630, 784, 938, 1070
NlaIV GGNNCC 1 cut(s) 1010
NmuCI GTSAC 2 cut(s) 256, 376
NspI RCATGY 2 cut(s) 938, 1070
PaeI GCATGC 1 cut(s) 1070
PagI TCATGA 1 cut(s) 780
PciI ACATGT 1 cut(s) 934
PdmI GAANNNNTTC 1 cut(s) 1092
PfeI GAWTC 2 cut(s) 156, 649
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PscI ACATGT 1 cut(s) 934
PspN4I GGNNCC 1 cut(s) 1010
PspPI GGNCC 3 cut(s) 416, 562, 1008
RsaI GTAC 2 cut(s) 338, 944
RsaNI GTAC 2 cut(s) 337, 943
SaqAI TTAA 5 cut(s) 189, 371, 404, 731, 1083
Sau3AI GATC 3 cut(s) 82, 115, 985
Sau96I GGNCC 3 cut(s) 416, 562, 1008
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 253
SduI GDGCHC 3 cut(s) 549, 583, 760
SfcI CTRYAG 1 cut(s) 508
SinI GGWCC 2 cut(s) 416, 562
SmlI CTYRAG 3 cut(s) 332, 362, 884
SmoI CTYRAG 3 cut(s) 332, 362, 884
SphI GCATGC 1 cut(s) 1070
Sse9I AATT 9 cut(s) 193, 391, 688, 728, 745, 866, 897, 975, 1109
SspI AATATT 3 cut(s) 493, 664, 736
SspMI CTAG 2 cut(s) 65, 968
TaaI ACNGT 5 cut(s) 353, 376, 382, 850, 961
TaiI ACGT 2 cut(s) 546, 840
TaqI TCGA 2 cut(s) 615, 840
TasI AATT 9 cut(s) 193, 391, 688, 728, 745, 866, 897, 975, 1109
TatI WGTACW 2 cut(s) 336, 942
TfiI GAWTC 2 cut(s) 156, 649
Tru1I TTAA 5 cut(s) 189, 371, 404, 731, 1083
Tru9I TTAA 5 cut(s) 189, 371, 404, 731, 1083
TscAI CASTG 1 cut(s) 56
TseFI GTSAC 2 cut(s) 256, 376
Tsp45I GTSAC 2 cut(s) 256, 376
TspDTI ATGAA 6 cut(s) 150, 339, 489, 615, 769, 797
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 1 cut(s) 56
VpaK11BI GGWCC 2 cut(s) 416, 562
XapI RAATTY 4 cut(s) 193, 391, 866, 1109
XceI RCATGY 2 cut(s) 938, 1070
XmiI GTMKAC 1 cut(s) 678
XmnI GAANNNNTTC 1 cut(s) 1092
XspI CTAG 2 cut(s) 65, 968
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.