Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000430.1

Orthogroup ID

OG0000095

Physical Location & Seq

Genomic Coordinates Forward (+)

15513 .. 19208

Gene Structure 3696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000430.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggtggacagggtcagtgcattgcccgatgacattcttgttagtttagtgtctcgcttgccgctaaaggaagctgtagctaccagtgtcctttctaggcgatggcagaatgtaggactgtctactatgacccttaggtttgatgctgttgacttctcaattgacaataatatacgccactactttcgccaaccaaaagaatttaaagagcaggagagctggaattacatcaattgggtgaatcatgtggtgcaacagcatagaggcgaacatatagaagaattcaggattagcttctgtttagatagtcgcttttcaagttccattaatgaatggattcaatttgcaatggaaaacagtgttgaaatgcttgaattggatttttatccagaagtttttattagatttgaagattatacatttccccacaaacttttggggatctgcactccaagtctgggctgttgtggatacaatattggtttcaagtccctcaaagttcttcagatccgacatgttggtgtgactggagaagttctcgagtatttcctgtccaactgtccattactcgagagattatcagtgacttccgcaaaagatttgtttaatttaagagttgttggttcgtcgattgcgttgaagtatttggtgatactaaattgttctaacctggaaaccattgaaatcagagacgtaaacgtcgtttcatttatttactgtggatttaggtcgacaaacctgcttatcagtaatgtaccattgctttctgaggtaacagtttctaagcagtgttggcaaaaggattttataagggttgtctttacccaactttcctgctgtctctccagcatagagattctgaagctgcatatcgagggagcggcctacaatgagaatcctgtattgcctctattagcaaatctgaagcatttggaattactagttgcagcaaattattataaggcacttcatcatataaatagcttcctgaaggcatctccttacttgcagagactagtattaaagagcatgggagggtggcctccctacaaggtaccggccgacctccacaatagcgaggtagctcgggtcgacctccaccatagcgaggtagctcgggtgtcagactaccggatgcatgtcgtaggcgggactagccatgtcgtggggcccacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016874 GO:0016879 GO:0016880 GO:0017178 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

Diphthami_syn_2 Ribonuc_L-PSP

Protein Analysis

392

Amino Acids

44.77

Weight (kDa)

6.57

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica	MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica	Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis	pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis	RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata	RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora	Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii	Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa	Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha	Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana	Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	809, 960
AasI	GACNNNNNNGTC	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	747
Acc65I	GGTACC	1 cut(s)	1054
AccB1I	GGYRCC	1 cut(s)	1054
AccB7I	CCANNNNNTGG	1 cut(s)	1165
AccBSI	CCGCTC	1 cut(s)	881
AccI	GTMKAC	3 cut(s)	122, 731, 1092
AciI	CCGC	4 cut(s)	62, 591, 881, 1149
AclWI	GGATC	2 cut(s)	449, 502
AcoI	YGGCCR	1 cut(s)	1059
AcsI	RAATTY	2 cut(s)	200, 281
AcuI	CTGAAG	4 cut(s)	488, 881, 944, 1010
AfaI	GTAC	2 cut(s)	756, 1056
AfiI	CCNNNNNNNGG	3 cut(s)	458, 1108, 1165
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	8 cut(s)	318, 341, 365, 374, 410, 487, 640, 683
AhlI	ACTAGT	2 cut(s)	940, 1015
AjnI	CCWGG	1 cut(s)	669
AluBI	AGCT	8 cut(s)	74, 80, 219, 294, 865, 984, 1085, 1115
AluI	AGCT	8 cut(s)	74, 80, 219, 294, 865, 984, 1085, 1115
Alw26I	GTCTC	4 cut(s)	57, 684, 845, 1006
AlwI	GGATC	2 cut(s)	449, 502
Ama87I	CYCGRG	4 cut(s)	539, 569, 1086, 1116
AoxI	GGCC	4 cut(s)	882, 1040, 1059, 1169
ApaI	GGGCCC	1 cut(s)	1173
ApeKI	GCWGC	2 cut(s)	865, 947
ApoI	RAATTY	2 cut(s)	200, 281
AseI	ATTAAT	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	336
Asp718I	GGTACC	1 cut(s)	1054
AspS9I	GGNCC	2 cut(s)	1169, 1170
AsuHPI	GGTGA	2 cut(s)	250, 661
AvaI	CYCGRG	4 cut(s)	539, 569, 1086, 1116
AxyI	CCTNAGG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	1173
BanI	GGYRCC	1 cut(s)	1054
BanII	GRGCYC	1 cut(s)	1173
BbvI	GCAGC	2 cut(s)	852, 959
BccI	CCATC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BciT130I	CCWGG	1 cut(s)	671
BciVI	GTATCC	1 cut(s)	464
BcoDI	GTCTC	4 cut(s)	57, 684, 845, 1006
BcuI	ACTAGT	2 cut(s)	940, 1015
BfaI	CTAG	4 cut(s)	96, 941, 1016, 1155
BfmI	CTRYAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	747
BfuI	GTATCC	1 cut(s)	464
BisI	GCNGC	4 cut(s)	62, 866, 882, 948
BlsI	GCNGC	4 cut(s)	63, 867, 883, 949
Bme1390I	CCNGG	1 cut(s)	671
BmeT110I	CYCGRG	4 cut(s)	539, 569, 1086, 1116
BmgT120I	GGNCC	2 cut(s)	1169, 1170
BmiI	GGNNCC	3 cut(s)	1056, 1170, 1171
BmrFI	CCNGG	1 cut(s)	671
BmsI	GCATC	3 cut(s)	133, 1004, 1125
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
BpmI	CTGGAG	2 cut(s)	549, 829
BsaBI	GATNNNNATC	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	1131
Bsc4I	CCNNNNNNNGG	3 cut(s)	458, 1108, 1165
Bse118I	RCCGGY	1 cut(s)	1057
Bse1I	ACTGG	2 cut(s)	84, 532
Bse21I	CCTNAGG	1 cut(s)	134
Bse3DI	GCAATG	3 cut(s)	20, 354, 758
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	671
BseGI	GGATG	1 cut(s)	1140
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	458, 1108, 1165
BseMI	GCAATG	3 cut(s)	20, 354, 758
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	2 cut(s)	84, 532
BseSI	GKGCMC	1 cut(s)	1173
BseX3I	CGGCCG	1 cut(s)	1059
BseXI	GCAGC	2 cut(s)	852, 959
BsgI	GTGCAG	1 cut(s)	430
Bsh1285I	CGRYCG	1 cut(s)	1062
BshFI	GGCC	4 cut(s)	884, 1042, 1061, 1171
BshNI	GGYRCC	1 cut(s)	1054
BsiEI	CGRYCG	1 cut(s)	1062
BsiHKCI	CYCGRG	4 cut(s)	539, 569, 1086, 1116
BsiSI	CCGG	2 cut(s)	1058, 1132
BslFI	GGGAC	2 cut(s)	475, 1165
BslI	CCNNNNNNNGG	3 cut(s)	458, 1108, 1165
BsmAI	GTCTC	4 cut(s)	57, 684, 845, 1006
BsmBI	CGTCTC	1 cut(s)	684
BsmFI	GGGAC	2 cut(s)	475, 1165
BsnI	GGCC	4 cut(s)	884, 1042, 1061, 1171
BsoBI	CYCGRG	4 cut(s)	539, 569, 1086, 1116
Bsp120I	GGGCCC	1 cut(s)	1169
Bsp1286I	GDGCHC	1 cut(s)	1173
Bsp143I	GATC	2 cut(s)	441, 507
BspACI	CCGC	4 cut(s)	62, 591, 881, 1149
BspANI	GGCC	4 cut(s)	884, 1042, 1061, 1171
BspCNI	CTCAG	1 cut(s)	760
BspLI	GGNNCC	3 cut(s)	1056, 1170, 1171
BspMI	ACCTGC	1 cut(s)	747
BspPI	GGATC	2 cut(s)	449, 502
BspT107I	GGYRCC	1 cut(s)	1054
BsrBI	CCGCTC	1 cut(s)	881
BsrDI	GCAATG	3 cut(s)	20, 354, 758
BsrFI	RCCGGY	1 cut(s)	1057
BsrI	ACTGG	2 cut(s)	84, 532
BssAI	RCCGGY	1 cut(s)	1057
BssMI	GATC	2 cut(s)	441, 507
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	5 cut(s)	120, 359, 560, 719, 778
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	3 cut(s)	134, 768, 783
BstF5I	GGATG	1 cut(s)	1140
BstKTI	GATC	2 cut(s)	444, 510
BstMAI	GTCTC	4 cut(s)	57, 684, 845, 1006
BstMBI	GATC	2 cut(s)	441, 507
BstMCI	CGRYCG	1 cut(s)	1062
BstMWI	GCNNNNNNNGC	2 cut(s)	793, 1155
BstNI	CCWGG	1 cut(s)	671
BstNSI	RCATGY	2 cut(s)	518, 1142
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	1173
BstV1I	GCAGC	2 cut(s)	852, 959
BstX2I	RGATCY	2 cut(s)	441, 507
BstYI	RGATCY	2 cut(s)	441, 507
BstZI	CGGCCG	1 cut(s)	1059
Bsu36I	CCTNAGG	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	4 cut(s)	884, 1042, 1061, 1171
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	1140
BtsI	GCAGTG	1 cut(s)	794
BtsIMutI	CAGTG	5 cut(s)	22, 91, 364, 588, 794
BveI	ACCTGC	1 cut(s)	747
Cac8I	GCNNGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	1057
Cfr13I	GGNCC	2 cut(s)	1169, 1170
Csp6I	GTAC	2 cut(s)	755, 1055
CviAII	CATG	5 cut(s)	245, 515, 1030, 1139, 1160
CviQI	GTAC	2 cut(s)	755, 1055
DdeI	CTNAG	3 cut(s)	134, 768, 783
DpnI	GATC	2 cut(s)	443, 509
DpnII	GATC	2 cut(s)	441, 507
DraI	TTTAAA	1 cut(s)	205
DrdI	GACNNNNNNGTC	1 cut(s)	698
DseDI	GACNNNNNNGTC	1 cut(s)	698
EaeI	YGGCCR	1 cut(s)	1059
EagI	CGGCCG	1 cut(s)	1059
EclXI	CGGCCG	1 cut(s)	1059
Eco24I	GRGCYC	1 cut(s)	1173
Eco52I	CGGCCG	1 cut(s)	1059
Eco57I	CTGAAG	4 cut(s)	488, 881, 944, 1010
Eco81I	CCTNAGG	1 cut(s)	134
Eco88I	CYCGRG	4 cut(s)	539, 569, 1086, 1116
EcoO109I	RGGNCCY	1 cut(s)	1169
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	669
EcoT22I	ATGCAT	1 cut(s)	1140
EcoT38I	GRGCYC	1 cut(s)	1173
Esp3I	CGTCTC	1 cut(s)	684
FaeI	CATG	5 cut(s)	248, 518, 1033, 1142, 1163
FaqI	GGGAC	2 cut(s)	475, 1165
FatI	CATG	5 cut(s)	244, 514, 1029, 1138, 1159
FauI	CCCGC	1 cut(s)	1142
FblI	GTMKAC	3 cut(s)	122, 731, 1092
Fnu4HI	GCNGC	4 cut(s)	62, 866, 882, 948
FokI	GGATG	1 cut(s)	1147
FriOI	GRGCYC	1 cut(s)	1173
Fsp4HI	GCNGC	4 cut(s)	62, 866, 882, 948
FspBI	CTAG	4 cut(s)	96, 941, 1016, 1155
GluI	GCNGC	4 cut(s)	62, 866, 882, 948
GsuI	CTGGAG	2 cut(s)	549, 829
HaeIII	GGCC	4 cut(s)	884, 1042, 1061, 1171
HapII	CCGG	2 cut(s)	1058, 1132
Hin1II	CATG	5 cut(s)	248, 518, 1033, 1142, 1163
HincII	GTYRAC	3 cut(s)	151, 732, 1093
HindII	GTYRAC	3 cut(s)	151, 732, 1093
HinfI	GANTC	4 cut(s)	241, 337, 856, 895
HpaII	CCGG	2 cut(s)	1058, 1132
HphI	GGTGA	2 cut(s)	250, 661
Hpy166II	GTNNAC	6 cut(s)	7, 123, 151, 697, 732, 1093
Hpy188I	TCNGA	7 cut(s)	507, 512, 689, 769, 861, 924, 1126
Hpy188III	TCNNGA	5 cut(s)	286, 389, 539, 571, 988
Hpy8I	GTNNAC	6 cut(s)	7, 123, 151, 697, 732, 1093
Hpy99I	CGWCG	2 cut(s)	631, 704
HpyAV	CCTTC	1 cut(s)	985
HpyCH4III	ACNGT	5 cut(s)	120, 359, 560, 719, 778
HpyCH4IV	ACGT	2 cut(s)	693, 699
HpyCH4V	TGCA	8 cut(s)	20, 253, 347, 447, 868, 947, 1009, 1138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	793, 1155
HpyF3I	CTNAG	3 cut(s)	134, 768, 783
HpySE526I	ACGT	2 cut(s)	693, 699
Hsp92II	CATG	5 cut(s)	248, 518, 1033, 1142, 1163
KpnI	GGTACC	1 cut(s)	1058
Kzo9I	GATC	2 cut(s)	441, 507
LmnI	GCTCC	1 cut(s)	878
Lsp1109I	GCAGC	2 cut(s)	852, 959
LweI	GCATC	3 cut(s)	133, 1004, 1125
MaeI	CTAG	4 cut(s)	96, 941, 1016, 1155
MaeII	ACGT	2 cut(s)	693, 699
MaeIII	GTNAC	3 cut(s)	523, 583, 772
MalI	GATC	2 cut(s)	443, 509
MbiI	CCGCTC	1 cut(s)	881
MboI	GATC	2 cut(s)	441, 507
MboII	GAAGA	3 cut(s)	290, 422, 494
MfeI	CAATTG	2 cut(s)	159, 232
MflI	RGATCY	2 cut(s)	441, 507
MhlI	GDGCHC	1 cut(s)	1173
MmeI	TCCRAC	2 cut(s)	535, 579
Mph1103I	ATGCAT	1 cut(s)	1140
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	5 cut(s)	204, 327, 606, 611, 1022
MslI	CAYNNNNRTG	1 cut(s)	519
MspI	CCGG	2 cut(s)	1058, 1132
MspR9I	CCNGG	1 cut(s)	671
MunI	CAATTG	2 cut(s)	159, 232
MvaI	CCWGG	1 cut(s)	671
MwoI	GCNNNNNNNGC	2 cut(s)	793, 1155
NdeII	GATC	2 cut(s)	441, 507
NlaIII	CATG	5 cut(s)	248, 518, 1033, 1142, 1163
NlaIV	GGNNCC	3 cut(s)	1056, 1170, 1171
NmuCI	GTSAC	2 cut(s)	523, 583
NsiI	ATGCAT	1 cut(s)	1140
NspI	RCATGY	2 cut(s)	518, 1142
PaeR7I	CTCGAG	2 cut(s)	539, 569
PciI	ACATGT	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	2 cut(s)	632, 699
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	241, 337, 856, 895
PflFI	GACNNNGTC	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	1165
PkrI	GCNGC	4 cut(s)	63, 867, 883, 949
PscI	ACATGT	1 cut(s)	514
PshBI	ATTAAT	1 cut(s)	327
PsiI	TTATAA	2 cut(s)	809, 960
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	3 cut(s)	1056, 1170, 1171
PspOMI	GGGCCC	1 cut(s)	1169
PspPI	GGNCC	2 cut(s)	1169, 1170
PsuI	RGATCY	2 cut(s)	441, 507
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	2 cut(s)	756, 1056
RsaNI	GTAC	2 cut(s)	755, 1055
RseI	CAYNNNNRTG	1 cut(s)	519
SalI	GTCGAC	2 cut(s)	730, 1091
SaqAI	TTAA	5 cut(s)	204, 327, 606, 611, 1022
SatI	GCNGC	4 cut(s)	62, 866, 882, 948
Sau3AI	GATC	2 cut(s)	441, 507
Sau96I	GGNCC	2 cut(s)	1169, 1170
ScrFI	CCNGG	1 cut(s)	671
SduI	GDGCHC	1 cut(s)	1173
SfaNI	GCATC	3 cut(s)	133, 1004, 1125
SfcI	CTRYAG	1 cut(s)	75
Sfr274I	CTCGAG	2 cut(s)	539, 569
SlaI	CTCGAG	2 cut(s)	539, 569
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	539, 569
SmoI	CTYRAG	2 cut(s)	539, 569
SpeI	ACTAGT	2 cut(s)	940, 1015
SsiI	CCGC	4 cut(s)	62, 591, 881, 1149
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	4 cut(s)	96, 941, 1016, 1155
StyD4I	CCNGG	1 cut(s)	669
TaaI	ACNGT	5 cut(s)	120, 359, 560, 719, 778
TaiI	ACGT	2 cut(s)	696, 702
TaqI	TCGA	6 cut(s)	540, 570, 629, 731, 873, 1092
TauI	GCSGC	2 cut(s)	64, 884
TfiI	GAWTC	4 cut(s)	241, 337, 856, 895
Tru1I	TTAA	5 cut(s)	204, 327, 606, 611, 1022
Tru9I	TTAA	5 cut(s)	204, 327, 606, 611, 1022
TscAI	CASTG	5 cut(s)	22, 91, 364, 588, 794
TseFI	GTSAC	2 cut(s)	523, 583
TseI	GCWGC	2 cut(s)	865, 947
Tsp45I	GTSAC	2 cut(s)	523, 583
TspDTI	ATGAA	3 cut(s)	345, 696, 959
TspRI	CASTG	5 cut(s)	22, 91, 364, 588, 794
Tth111I	GACNNNGTC	1 cut(s)	11
Van91I	CCANNNNNTGG	1 cut(s)	1165
VspI	ATTAAT	1 cut(s)	327
XapI	RAATTY	2 cut(s)	200, 281
XceI	RCATGY	2 cut(s)	518, 1142
XhoI	CTCGAG	2 cut(s)	539, 569
XmiI	GTMKAC	3 cut(s)	122, 731, 1092
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	4 cut(s)	96, 941, 1016, 1155
Zsp2I	ATGCAT	1 cut(s)	1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.