Rh3CG019200

diphthine-ammonia ligase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
1297074 .. 1299788
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG019200.1

Sequence Viewer

Length: 363 bp
ATGAAGAAGAGAAGAGCAACCTTTCAATCTGTGGAGAACGAATTGCAGCTGTATCTGGGGGGTCCAGCACGCATGGAACTTGGAGAAATTGAGAAAGCAGCTGATTGCCCCCATAATCACCTCAAGGTAGTAGAAATAGTTGGCTATCGAGCTCATACATCTGGTGTTGAACATGTCATGCACTTAATAAAGAATGTCCTTGCACTGGAGAAAATTGTGATTGATCCTGTACGGACATGGCAATATCCTCATGGAGTTGATAGGCCAGATACAGACCTCGATAAAGAAGTCAAGGCTAGAGACCATGCTAAGCAATACCTTGAACCAAAAATCCCTTCAACTGTAGAATTTGTGTGCCTGTAG

Protein Analysis

120

Amino Acids

13.74

Weight (kDa)

6.65

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 31 - 117 6.7e-08 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 347
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 4 cut(s) 26, 170, 323, 339
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 3 cut(s) 49, 101, 152
AluI AGCT 3 cut(s) 49, 101, 152
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 1 cut(s) 218
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 46, 98
ApoI RAATTY 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 58, 110
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 2 cut(s) 342, 359
BisI GCNGC 2 cut(s) 47, 99
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 2 cut(s) 48, 100
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 227
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 58, 110
BshFI GGCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 294
BsnI GGCC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 223
Bsp1720I GCTNAGC 1 cut(s) 309
BspANI GGCC 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 294
BsrI ACTGG 1 cut(s) 210
BssMI GATC 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 2 cut(s) 2, 7
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 309
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 1 cut(s) 223
BstNSI RCATGY 1 cut(s) 176
BstSFI CTRYAG 2 cut(s) 342, 359
BstV1I GCAGC 2 cut(s) 58, 110
BsuRI GGCC 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 230
CviAII CATG 6 cut(s) 73, 173, 178, 237, 251, 305
CviJI RGCY 6 cut(s) 49, 101, 144, 152, 265, 296
CviKI_1 RGCY 6 cut(s) 49, 101, 144, 152, 265, 296
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 2, 7
EarI CTCTTC 2 cut(s) 2, 7
Ecl136II GAGCTC 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 154
FaeI CATG 6 cut(s) 76, 176, 181, 240, 254, 308
FaiI YATR 8 cut(s) 74, 114, 156, 174, 179, 238, 252, 306
FatI CATG 6 cut(s) 72, 172, 177, 236, 250, 304
Fnu4HI GCNGC 2 cut(s) 47, 99
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 47, 99
FspBI CTAG 1 cut(s) 297
GluI GCNGC 2 cut(s) 47, 99
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 265
Hin1II CATG 6 cut(s) 76, 176, 181, 240, 254, 308
HphI GGTGA 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 46, 181, 203
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 6 cut(s) 76, 176, 181, 240, 254, 308
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 7
LpnPI CCDG 6 cut(s) 41, 78, 147, 191, 240, 279
Lsp1109I GCAGC 2 cut(s) 58, 110
MaeI CTAG 1 cut(s) 297
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 3 cut(s) 16, 19, 24
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 4 cut(s) 41, 87, 213, 347
MnlI CCTC 3 cut(s) 131, 258, 287
MseI TTAA 1 cut(s) 185
MspA1I CMGCKG 2 cut(s) 49, 101
NdeII GATC 1 cut(s) 223
NlaIII CATG 6 cut(s) 76, 176, 181, 240, 254, 308
NlaIV GGNNCC 1 cut(s) 63
NspI RCATGY 1 cut(s) 176
PciI ACATGT 1 cut(s) 172
PciSI GCTCTTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 48, 100
PscI ACATGT 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 62
PvuII CAGCTG 2 cut(s) 49, 101
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SacI GAGCTC 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 47, 99
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 62
SduI GDGCHC 1 cut(s) 154
SetI ASST 8 cut(s) 23, 51, 103, 123, 129, 154, 279, 321
SfcI CTRYAG 2 cut(s) 342, 359
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 4 cut(s) 41, 87, 213, 347
SspMI CTAG 1 cut(s) 297
SstI GAGCTC 1 cut(s) 154
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 148, 279
TasI AATT 4 cut(s) 41, 87, 213, 347
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 1 cut(s) 210
TseI GCWGC 2 cut(s) 46, 98
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 347
XceI RCATGY 1 cut(s) 176
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.