Rroxscaffold_2G00089490

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000095
Physical Location & Seq
Forward (+)
11468817 .. 11472651
3835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089490.1

Sequence Viewer

Length: 1572 bp
ATGAGGGGAAGAGAAAGAAAGAGAAAAGCAAAGGGTGATTATGACTTGGTAGACCGAATCAGTGCGTTGCCTGATGAACTTCTCTCCATAATAGTCCATTCCTTGCCTGTTAAGGAAGCGGCAGCTACTAGTATTCTTTCCAGGCGATGGAAGTATGTATGGAAATCTTCAACAAATCTCGACTTTTCTGATGCTAGGTTTATTGTTGGTAAAGGTTGTCGCGGGTTCCTTCAACGACAACGACATGATAATCATCAAAATAGCCAGAGATATGTCAATTCGGTAAATCGTGCGATTGAACAATATAGTAACCTAACCGTCGAACGATTCAGGGCTTGCTTTATTATAGATCCTCGGTATACAGGGGACATTGTTAATTGGCTTCAATTTGCTATGAATAAGAAAGTCGAAATATTGGAGTTAGAGTTCTACATAGATTCTGGTCTTGCAGGTACGTATCCTATATATCCTTTTCCCCACAAACTATTAGGTATTGGAGAAGAGTCTGAGCTCCAGAACTCGTATTCTTCCGACCCTCCAAGTCATCAATCTTGTGGATACAATGTTGGATTTAAGTTCGTCAAAGTTCTCCATTTTCGATGTGTTGATGTGACTCAAGAAGTCCTTGAGTACTTCTTGTCGAACTGTGCAGCTCTTGAACGATTAACTGTGAATGCTGCTCACAATTTGTTGGATCTGAGAGTTGGTGGCCCCTCGATTGCCTTGAAGCATTTAACGTTAATAGATTGTTCTCGCCTCGAAAGTATTGAGGTTTGTGATGCAAAGCTTGTCTCTTTCCATCTTTCTGGGAGAGAGGTGAAAAGACTGCTTCTCACTAGAGTACCGTTGCTTGTTGAGGTATCCTACATGACCGCAGTGAGATCAATATGGCTTCTCCTCACCCAACTTTCATTTTGTATTTCCCAGTTAGAGATTCTCAATTTAGATATAAATGGAGGGGACTACAATCGGAATCATGTATTTCCTATATTATCAAATCTCAGGCATTTAGAATTAAAATTTGATTCAGACTGTGAGAGTGATCTTTGTAATTTTACTCGTTTCATTGAGGCATCTCCCCACTTGCATAGACTTGTGTTGAAGTTGCAGAACTGTACGCGTACGAGGCCTGAAATATGCAGGAAGATAGGTAGAATTGCCAAATTCCCCCGTCATTACCTCAAGGTAGTAGAGATAGTAGGGTATCGTGGGAGTCATTGTCATGTTCAACATGCACTATACTTTGTAAAGAAGGCTGTCGTATTGGAGAAACTTGTTATTGATCCTGTCCGGCGTTGGGGTGCTTGGCTCGATAGAGATTTTAAAGAAGTGAAAGAGGAAAGCGACGCAAGGTATCACGCTAATCGTCACCTCAGAAGAAAAGTGCCTTCAACAGTTGAATTTGTATTAACGCTCGAACTCGAAGAAGAGTCTTTCCTAAAAGCGAGATTCTTTGATGTTGGTTCCCCCGGTTCTATGAATCAATCCAACATTTTGGAGTCTCATAAGCCATGGAGAATTGAAAATATAAGCTTTGAAGAAAAAGTTAAGGGAAGCAGCAGAACAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

523

Amino Acids

60.48

Weight (kDa)

9.01

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 58 1.1e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 122 - 469 2.7e-33 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 126 - 263 2.2e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 440
AccB7I CCANNNNNTGG 1 cut(s) 147
AccI GTMKAC 2 cut(s) 51, 359
AccII CGCG 2 cut(s) 222, 1120
AciI CCGC 3 cut(s) 119, 222, 873
AclI AACGTT 1 cut(s) 737
AclWI GGATC 3 cut(s) 344, 702, 1277
AcsI RAATTY 3 cut(s) 1019, 1163, 1400
AfaI GTAC 5 cut(s) 454, 632, 843, 1117, 1123
AfiI CCNNNNNNNGG 2 cut(s) 147, 1297
AflIII ACRYGT 1 cut(s) 1118
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 5 cut(s) 125, 511, 653, 787, 1533
AluI AGCT 5 cut(s) 125, 511, 653, 787, 1533
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 2 cut(s) 796, 1506
AlwI GGATC 3 cut(s) 344, 702, 1277
AoxI GGCC 2 cut(s) 709, 1127
ApeKI GCWGC 4 cut(s) 122, 650, 677, 1557
ApoI RAATTY 3 cut(s) 1019, 1163, 1400
AspS9I GGNCC 1 cut(s) 710
AsuC2I CCSGG 1 cut(s) 1470
AsuHPI GGTGA 4 cut(s) 47, 829, 892, 1361
BaeI ACNNNNGTAYC 2 cut(s) 825, 858
BanII GRGCYC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 3 cut(s) 134, 662, 664
BccI CCATC 2 cut(s) 141, 807
BciT130I CCWGG 1 cut(s) 142
BciVI GTATCC 3 cut(s) 468, 551, 871
BcnI CCSGG 1 cut(s) 1470
BcoDI GTCTC 2 cut(s) 796, 1506
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 3 cut(s) 129, 195, 837
BfuAI ACCTGC 1 cut(s) 440
BfuI GTATCC 3 cut(s) 468, 551, 871
BisI GCNGC 5 cut(s) 120, 123, 651, 678, 1558
BlsI GCNGC 5 cut(s) 121, 124, 652, 679, 1559
BmcAI AGTACT 1 cut(s) 632
Bme1390I CCNGG 2 cut(s) 142, 1470
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 3 cut(s) 227, 712, 1465
BmrFI CCNGG 2 cut(s) 142, 1470
BmrI ACTGGG 1 cut(s) 919
BmsI GCATC 3 cut(s) 181, 769, 1082
BmuI ACTGGG 1 cut(s) 919
BpmI CTGGAG 1 cut(s) 497
BpuEI CTTGAG 3 cut(s) 600, 647, 1166
BpuMI CCSGG 1 cut(s) 1470
BsaAI YACGTR 1 cut(s) 456
BsaBI GATNNNNATC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 353, 1468, 1511
BsaXI ACNNNNNCTCC 4 cut(s) 410, 440, 1204, 1234
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 1297
Bse1I ACTGG 1 cut(s) 925
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 3 cut(s) 353, 1468, 1511
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 147, 1297
BseMII CTCAG 4 cut(s) 498, 689, 1015, 1387
BseNI ACTGG 1 cut(s) 925
BseRI GAGGAG 1 cut(s) 887
BseXI GCAGC 3 cut(s) 134, 662, 664
BsgI GTGCAG 1 cut(s) 669
Bsh1236I CGCG 2 cut(s) 222, 1120
BshFI GGCC 2 cut(s) 711, 1129
BsiHKAI GWGCWC 1 cut(s) 513
BsiSI CCGG 2 cut(s) 1291, 1470
BsiWI CGTACG 1 cut(s) 1121
BslFI GGGAC 2 cut(s) 380, 974
BslI CCNNNNNNNGG 2 cut(s) 147, 1297
BsmAI GTCTC 2 cut(s) 796, 1506
BsmFI GGGAC 2 cut(s) 380, 974
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 2 cut(s) 711, 1129
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 5 cut(s) 349, 694, 881, 1042, 1282
Bsp19I CCATGG 1 cut(s) 1511
BspACI CCGC 3 cut(s) 119, 222, 873
BspANI GGCC 2 cut(s) 711, 1129
BspCNI CTCAG 4 cut(s) 499, 690, 1014, 1386
BspFNI CGCG 2 cut(s) 222, 1120
BspLI GGNNCC 3 cut(s) 227, 712, 1465
BspMI ACCTGC 1 cut(s) 440
BspPI GGATC 3 cut(s) 344, 702, 1277
BsrI ACTGG 1 cut(s) 925
BssECI CCNNGG 3 cut(s) 353, 1468, 1511
BssMI GATC 5 cut(s) 349, 694, 881, 1042, 1282
BssNAI GTATAC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 1511
Bst1107I GTATAC 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 7 cut(s) 319, 647, 670, 846, 1034, 1115, 1396
Bst6I CTCTTC 3 cut(s) 4, 495, 1422
BstBAI YACGTR 1 cut(s) 456
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 4 cut(s) 507, 698, 1001, 1373
BstDSI CCRYGG 1 cut(s) 1511
BstFNI CGCG 2 cut(s) 222, 1120
BstKTI GATC 5 cut(s) 352, 697, 884, 1045, 1285
BstMAI GTCTC 2 cut(s) 796, 1506
BstMBI GATC 5 cut(s) 349, 694, 881, 1042, 1282
BstMWI GCNNNNNNNGC 1 cut(s) 1126
BstNI CCWGG 1 cut(s) 142
BstNSI RCATGY 1 cut(s) 1235
BstSCI CCNGG 2 cut(s) 140, 1468
BstSNI TACGTA 1 cut(s) 456
BstUI CGCG 2 cut(s) 222, 1120
BstV1I GCAGC 3 cut(s) 134, 662, 664
BstX2I RGATCY 2 cut(s) 349, 694
BstXI CCANNNNNNTGG 2 cut(s) 806, 1495
BstYI RGATCY 2 cut(s) 349, 694
BstZ17I GTATAC 1 cut(s) 360
BsuI GTATCC 3 cut(s) 468, 551, 871
BsuRI GGCC 2 cut(s) 711, 1129
BtgI CCRYGG 1 cut(s) 1511
BtgZI GCGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 2 cut(s) 67, 882
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 710
CseI GACGC 1 cut(s) 1355
Csp6I GTAC 5 cut(s) 453, 631, 842, 1116, 1122
CviAII CATG 6 cut(s) 245, 868, 977, 1223, 1232, 1512
CviQI GTAC 5 cut(s) 453, 631, 842, 1116, 1122
DdeI CTNAG 4 cut(s) 507, 698, 1001, 1373
DpnI GATC 5 cut(s) 351, 696, 883, 1044, 1284
DpnII GATC 5 cut(s) 349, 694, 881, 1042, 1282
DraI TTTAAA 1 cut(s) 1324
Eam1104I CTCTTC 3 cut(s) 4, 495, 1422
EarI CTCTTC 3 cut(s) 4, 495, 1422
Ecl136II GAGCTC 1 cut(s) 511
Eco105I TACGTA 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 1511
Eco147I AGGCCT 1 cut(s) 1129
Eco24I GRGCYC 1 cut(s) 513
Eco53kI GAGCTC 1 cut(s) 511
EcoICRI GAGCTC 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 1511
EcoT38I GRGCYC 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 1511
FaeI CATG 6 cut(s) 248, 871, 980, 1226, 1235, 1515
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 2 cut(s) 380, 974
FatI CATG 6 cut(s) 244, 867, 976, 1222, 1231, 1511
FauI CCCGC 1 cut(s) 215
FblI GTMKAC 2 cut(s) 51, 359
Fnu4HI GCNGC 5 cut(s) 120, 123, 651, 678, 1558
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 5 cut(s) 120, 123, 651, 678, 1558
FspBI CTAG 3 cut(s) 129, 195, 837
GluI GCNGC 5 cut(s) 120, 123, 651, 678, 1558
GsuI CTGGAG 1 cut(s) 497
HaeIII GGCC 2 cut(s) 711, 1129
HapII CCGG 2 cut(s) 1291, 1470
HgaI GACGC 1 cut(s) 1355
Hin1II CATG 6 cut(s) 248, 871, 980, 1226, 1235, 1515
HindIII AAGCTT 2 cut(s) 785, 1531
HpaII CCGG 2 cut(s) 1291, 1470
HphI GGTGA 4 cut(s) 47, 829, 892, 1361
Hpy166II GTNNAC 2 cut(s) 52, 360
Hpy188I TCNGA 7 cut(s) 190, 508, 532, 699, 972, 1030, 1376
Hpy188III TCNNGA 4 cut(s) 179, 514, 617, 656
Hpy8I GTNNAC 2 cut(s) 52, 360
Hpy99I CGWCG 2 cut(s) 323, 1349
HpyAV CCTTC 3 cut(s) 239, 1246, 1398
HpyCH4III ACNGT 7 cut(s) 319, 647, 670, 846, 1034, 1115, 1396
HpyCH4IV ACGT 2 cut(s) 455, 737
HpyCH4V TGCA 7 cut(s) 449, 650, 782, 1087, 1108, 1140, 1235
HpyF10VI GCNNNNNNNGC 1 cut(s) 1126
HpyF3I CTNAG 4 cut(s) 507, 698, 1001, 1373
HpySE526I ACGT 2 cut(s) 455, 737
Hsp92II CATG 6 cut(s) 248, 871, 980, 1226, 1235, 1515
Kzo9I GATC 5 cut(s) 349, 694, 881, 1042, 1282
LmnI GCTCC 1 cut(s) 516
Lsp1109I GCAGC 3 cut(s) 134, 662, 664
LweI GCATC 3 cut(s) 181, 769, 1082
MaeI CTAG 3 cut(s) 129, 195, 837
MaeII ACGT 2 cut(s) 455, 737
MaeIII GTNAC 3 cut(s) 308, 610, 1367
MalI GATC 5 cut(s) 351, 696, 883, 1044, 1284
MboI GATC 5 cut(s) 349, 694, 881, 1042, 1282
MboII GAAGA 9 cut(s) 21, 159, 512, 519, 1156, 1389, 1436, 1439, 1550
MflI RGATCY 2 cut(s) 349, 694
MhlI GDGCHC 1 cut(s) 513
MluI ACGCGT 1 cut(s) 1118
MlyI GAGTC 5 cut(s) 512, 607, 1222, 1439, 1508
MmeI TCCRAC 4 cut(s) 547, 555, 672, 1512
MslI CAYNNNNRTG 1 cut(s) 1221
MspI CCGG 2 cut(s) 1291, 1470
MspR9I CCNGG 2 cut(s) 142, 1470
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 2 cut(s) 222, 1120
MwoI GCNNNNNNNGC 1 cut(s) 1126
NciI CCSGG 1 cut(s) 1470
NcoI CCATGG 1 cut(s) 1511
NdeII GATC 5 cut(s) 349, 694, 881, 1042, 1282
NlaIII CATG 6 cut(s) 248, 871, 980, 1226, 1235, 1515
NlaIV GGNNCC 3 cut(s) 227, 712, 1465
NmuCI GTSAC 2 cut(s) 610, 1367
NspI RCATGY 1 cut(s) 1235
PceI AGGCCT 1 cut(s) 1129
PctI GAATGC 1 cut(s) 679
PfeI GAWTC 8 cut(s) 57, 327, 437, 934, 973, 1025, 1449, 1480
Pfl23II CGTACG 1 cut(s) 1121
PflMI CCANNNNNTGG 1 cut(s) 147
PkrI GCNGC 5 cut(s) 121, 124, 652, 679, 1559
PleI GAGTC 5 cut(s) 511, 607, 1221, 1438, 1507
PpsI GAGTC 5 cut(s) 511, 607, 1221, 1438, 1507
Ppu21I YACGTR 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 513
Psp1406I AACGTT 1 cut(s) 737
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspLI CGTACG 1 cut(s) 1121
PspN4I GGNNCC 3 cut(s) 227, 712, 1465
PspPI GGNCC 1 cut(s) 710
PsuI RGATCY 2 cut(s) 349, 694
RsaI GTAC 5 cut(s) 454, 632, 843, 1117, 1123
RsaNI GTAC 5 cut(s) 453, 631, 842, 1116, 1122
RseI CAYNNNNRTG 1 cut(s) 1221
SacI GAGCTC 1 cut(s) 513
SatI GCNGC 5 cut(s) 120, 123, 651, 678, 1558
Sau3AI GATC 5 cut(s) 349, 694, 881, 1042, 1282
Sau96I GGNCC 1 cut(s) 710
ScaI AGTACT 1 cut(s) 632
SchI GAGTC 5 cut(s) 512, 607, 1222, 1439, 1508
ScrFI CCNGG 2 cut(s) 142, 1470
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 3 cut(s) 181, 769, 1082
SmiMI CAYNNNNRTG 1 cut(s) 1221
SmlI CTYRAG 3 cut(s) 615, 626, 1181
SmoI CTYRAG 3 cut(s) 615, 626, 1181
SnaBI TACGTA 1 cut(s) 456
SpeI ACTAGT 1 cut(s) 128
SseBI AGGCCT 1 cut(s) 1129
SsiI CCGC 3 cut(s) 119, 222, 873
SspI AATATT 1 cut(s) 414
SspMI CTAG 3 cut(s) 129, 195, 837
SstI GAGCTC 1 cut(s) 513
StuI AGGCCT 1 cut(s) 1129
StyD4I CCNGG 2 cut(s) 140, 1468
StyI CCWWGG 1 cut(s) 1511
TaaI ACNGT 7 cut(s) 319, 647, 670, 846, 1034, 1115, 1396
TaiI ACGT 2 cut(s) 458, 740
TaqII GACCGA 1 cut(s) 69
TatI WGTACW 1 cut(s) 630
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 8 cut(s) 57, 327, 437, 934, 973, 1025, 1449, 1480
TscAI CASTG 2 cut(s) 67, 882
TseFI GTSAC 2 cut(s) 610, 1367
TseI GCWGC 4 cut(s) 122, 650, 677, 1557
Tsp45I GTSAC 2 cut(s) 610, 1367
TspDTI ATGAA 5 cut(s) 90, 410, 900, 1054, 1493
TspRI CASTG 2 cut(s) 67, 882
Van91I CCANNNNNTGG 1 cut(s) 147
XapI RAATTY 3 cut(s) 1019, 1163, 1400
XceI RCATGY 1 cut(s) 1235
XmiI GTMKAC 2 cut(s) 51, 359
XspI CTAG 3 cut(s) 129, 195, 837
ZrmI AGTACT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.