Prupe.8G168400_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000095
Physical Location & Seq
Reverse (-)
17379376 .. 17380083
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G168400.1

Sequence Viewer

Length: 708 bp
ATGACAGATGAAATTCTTGTCAGTATATTGTCTCTCTTGTCGCTAAAGGAAGCGGCTGCTACTAGTATCCTTTCTAGACGTTGGCAGTATGTGTGGATGTCCACTATGGTTCTCAACTTTAATGCTAACTTTGATATTCATAGAAATCTCTGCCGCTTCATAGCCCTCAAAAGAAAATTAAGATATCTGGAAAGTGGTAGATACGTCAATTGGGTGAATCGTGTGGTGGAACAACATAGAGGCCCAAACATCGAAGAATTCAGGGCTTGCTTTCAACTAAATGATCGGTTTGCAAGTTCCATTGACAAATGGATTCAGTTTGCAATGGAAAAGGGGGTTAAAACACTCGTGTTGAAGTTTAGTACACAATGTGGCGCTGCTTCAAAAAATTTCTATGTGTTTCCCCACAAACTATTAGGTCTCGAGAAGAAGCACGTGTATTCTTACATTCCAAGTCTACGCCCTTGTGGATGCAAAGTTGGATTTCAGTTCCTTAAAGTTCTTCATTTCGAATGTGTTGACATGACTGATAAAGTTTTTGAATACTTCTTGTCCAACTGTCCAGTTCTTGAACGATTAACCGTGCATGAAACGAAAAGTTTCGTTAACTTAAGAGTTGTCCGTCCATCGGTTACATTGAAGCATTTAGTGACAGGAATTTGTCTTGGCCTGCAAAGCATTGAGATTTGTGATGCAAACCTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

236

Amino Acids

27.24

Weight (kDa)

9.31

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 457
AciI CCGC 2 cut(s) 53, 154
AcsI RAATTY 4 cut(s) 12, 257, 388, 657
AcvI CACGTG 1 cut(s) 436
AdeI CACNNNGTG 1 cut(s) 371
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 628
AflII CTTAAG 1 cut(s) 610
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 6 cut(s) 275, 355, 384, 542, 572, 640
AhlI ACTAGT 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 36, 425
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 2 cut(s) 241, 667
ApeKI GCWGC 2 cut(s) 56, 377
ApoI RAATTY 4 cut(s) 12, 257, 388, 657
Asp700I GAANNNNTTC 1 cut(s) 599
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 510
AvaI CYCGRG 1 cut(s) 422
BauI CACGAG 1 cut(s) 347
BbrPI CACGTG 1 cut(s) 436
BbvI GCAGC 2 cut(s) 43, 364
BccI CCATC 1 cut(s) 634
BciVI GTATCC 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 36, 425
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 2 cut(s) 63, 75
BfoI RGCGCY 1 cut(s) 378
BfrI CTTAAG 1 cut(s) 610
BfuI GTATCC 1 cut(s) 77
BisI GCNGC 4 cut(s) 54, 57, 154, 378
BlsI GCNGC 4 cut(s) 55, 58, 155, 379
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 242
BmsI GCATC 2 cut(s) 461, 682
Bpu14I TTCGAA 1 cut(s) 510
BsaAI YACGTR 1 cut(s) 436
BsaI GGTCTC 1 cut(s) 425
Bsc4I CCNNNNNNNGG 1 cut(s) 628
Bse1I ACTGG 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 330
BseGI GGATG 2 cut(s) 102, 476
BseLI CCNNNNNNNGG 1 cut(s) 628
BseMI GCAATG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 563
BseXI GCAGC 2 cut(s) 43, 364
BshFI GGCC 2 cut(s) 243, 669
BsiHKCI CYCGRG 1 cut(s) 422
BslI CCNNNNNNNGG 1 cut(s) 628
BsmAI GTCTC 2 cut(s) 36, 425
BsnI GGCC 2 cut(s) 243, 669
Bso31I GGTCTC 1 cut(s) 425
BsoBI CYCGRG 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 510
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 2 cut(s) 53, 154
BspANI GGCC 2 cut(s) 243, 669
BspT104I TTCGAA 1 cut(s) 510
BspTI CTTAAG 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 1 cut(s) 563
BssMI GATC 1 cut(s) 283
BssSI CACGAG 1 cut(s) 347
Bst2BI CACGAG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 560, 583
BstAFI CTTAAG 1 cut(s) 610
BstBAI YACGTR 1 cut(s) 436
BstBI TTCGAA 1 cut(s) 510
BstC8I GCNNGC 2 cut(s) 268, 671
BstF5I GGATG 2 cut(s) 102, 476
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 2 cut(s) 36, 425
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 43, 364
BsuI GTATCC 1 cut(s) 77
BsuRI GGCC 2 cut(s) 243, 669
BtsCI GGATG 2 cut(s) 102, 476
Cac8I GCNNGC 2 cut(s) 268, 671
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 363
CviAII CATG 2 cut(s) 523, 587
CviJI RGCY 5 cut(s) 56, 164, 243, 266, 669
CviKI_1 RGCY 5 cut(s) 56, 164, 243, 266, 669
CviQI GTAC 1 cut(s) 363
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DraIII CACNNNGTG 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 425
Eco32I GATATC 1 cut(s) 185
Eco72I CACGTG 1 cut(s) 436
Eco88I CYCGRG 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 257
EcoRV GATATC 1 cut(s) 185
FaeI CATG 2 cut(s) 526, 590
FaiI YATR 9 cut(s) 26, 90, 107, 141, 161, 237, 396, 524, 588
FatI CATG 2 cut(s) 522, 586
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 4 cut(s) 54, 57, 154, 378
FokI GGATG 2 cut(s) 109, 483
Fsp4HI GCNGC 4 cut(s) 54, 57, 154, 378
FspBI CTAG 2 cut(s) 63, 75
GlaI GCGC 1 cut(s) 376
GluI GCNGC 4 cut(s) 54, 57, 154, 378
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 2 cut(s) 243, 669
HhaI GCGC 1 cut(s) 377
Hin1II CATG 2 cut(s) 526, 590
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 2 cut(s) 520, 607
HindII GTYRAC 2 cut(s) 520, 607
HinfI GANTC 2 cut(s) 217, 313
HpaI GTTAAC 1 cut(s) 607
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 5 cut(s) 102, 365, 458, 520, 607
Hpy188III TCNNGA 5 cut(s) 75, 188, 422, 424, 569
Hpy8I GTNNAC 5 cut(s) 102, 365, 458, 520, 607
HpyCH4III ACNGT 2 cut(s) 560, 583
HpyCH4IV ACGT 3 cut(s) 79, 204, 435
HpyCH4V TGCA 6 cut(s) 293, 323, 474, 586, 673, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 675
HpySE526I ACGT 3 cut(s) 79, 204, 435
Hsp92II CATG 2 cut(s) 526, 590
HspAI GCGC 1 cut(s) 375
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 1 cut(s) 283
LpnPI CCDG 5 cut(s) 173, 247, 576, 639, 683
Lsp1109I GCAGC 2 cut(s) 43, 364
LweI GCATC 2 cut(s) 461, 682
MaeI CTAG 2 cut(s) 63, 75
MaeII ACGT 3 cut(s) 79, 204, 435
MaeIII GTNAC 2 cut(s) 631, 649
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 3 cut(s) 266, 439, 494
MfeI CAATTG 1 cut(s) 208
MluCI AATT 6 cut(s) 12, 176, 208, 257, 388, 657
MmeI TCCRAC 2 cut(s) 460, 579
MnlI CCTC 2 cut(s) 176, 233
MroXI GAANNNNTTC 1 cut(s) 599
MseI TTAA 8 cut(s) 120, 179, 339, 495, 578, 606, 611, 706
MspCI CTTAAG 1 cut(s) 610
MunI CAATTG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 675
NdeII GATC 1 cut(s) 283
NlaIII CATG 2 cut(s) 526, 590
NmuCI GTSAC 1 cut(s) 649
NspV TTCGAA 1 cut(s) 510
PaeR7I CTCGAG 1 cut(s) 422
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 2 cut(s) 217, 313
PkrI GCNGC 4 cut(s) 55, 58, 155, 379
PmaCI CACGTG 1 cut(s) 436
PmlI CACGTG 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 436
PspCI CACGTG 1 cut(s) 436
PspPI GGNCC 1 cut(s) 242
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SaqAI TTAA 8 cut(s) 120, 179, 339, 495, 578, 606, 611, 706
SatI GCNGC 4 cut(s) 54, 57, 154, 378
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 242
SetI ASST 5 cut(s) 82, 207, 421, 438, 702
SfaNI GCATC 2 cut(s) 461, 682
Sfr274I CTCGAG 1 cut(s) 422
SfuI TTCGAA 1 cut(s) 510
SlaI CTCGAG 1 cut(s) 422
SmlI CTYRAG 2 cut(s) 422, 610
SmoI CTYRAG 2 cut(s) 422, 610
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 6 cut(s) 12, 176, 208, 257, 388, 657
SsiI CCGC 2 cut(s) 53, 154
SspMI CTAG 2 cut(s) 63, 75
TaaI ACNGT 2 cut(s) 560, 583
TaiI ACGT 3 cut(s) 82, 207, 438
TaqI TCGA 3 cut(s) 252, 423, 510
TasI AATT 6 cut(s) 12, 176, 208, 257, 388, 657
TatI WGTACW 1 cut(s) 362
TauI GCSGC 2 cut(s) 56, 156
TfiI GAWTC 2 cut(s) 217, 313
Tru1I TTAA 8 cut(s) 120, 179, 339, 495, 578, 606, 611, 706
Tru9I TTAA 8 cut(s) 120, 179, 339, 495, 578, 606, 611, 706
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 2 cut(s) 56, 377
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 5 cut(s) 24, 128, 148, 494, 603
TspGWI ACGGA 1 cut(s) 611
Vha464I CTTAAG 1 cut(s) 610
XapI RAATTY 4 cut(s) 12, 257, 388, 657
XbaI TCTAGA 1 cut(s) 74
XhoI CTCGAG 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 2 cut(s) 63, 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.