Rh3DG020600

diphthine-ammonia ligase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
1307472 .. 1315132
7661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG020600.1

Sequence Viewer

Length: 546 bp
ATGAGCAATAATGCTGATCAGGCCACTATTGTCAAAGCTGGACAATCCACAACCGGCATTGGAGACAGGATCACCACGGCCACTTTGACGGCAACATTGCCGTCACTTGAAGAAGAAAAGCATCTTGAGAAAGAAGAGTATCGAGAGCTGGTTTCAGGGTTTACAAGTTCAAAAGGGGAGAATGAAACAGAGATTAGCAATAAATTTTCTTGGCTGACTATTAAATTGCAGCTGTATCAGGAGGGTCCATCATGCATGGAAATTGGAGAAATTGAGAAAGCAGCTGATTGCCCCCATAATCACCTCAAGGTAGTAGAAATAGTTGGTTATCGAGCTCATACATCTGGTGTTGAACATGTCATGCACTTAATAAAGAATGTTGTTGCACTGGAGAAAATTGTGATTGATCCTGTACGGACATGGAGATATCCTCAAGGAGTTGATAGGCCGGATACAGAACTCGTTAAAGAAGTCAAGGCCAGAGATCATGCTAAGCAGTACCTTGAAGCAAAAATCCCTTCAGCTGTGGAATTTGTGTGCCTGTAG

Protein Analysis

181

Amino Acids

20.24

Weight (kDa)

5.53

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 89 - 178 8.1e-08 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 77, 401
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 2 cut(s) 203, 530
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 2 cut(s) 414, 500
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 4 cut(s) 110, 171, 353, 506
AluBI AGCT 6 cut(s) 38, 148, 232, 284, 335, 524
AluI AGCT 6 cut(s) 38, 148, 232, 284, 335, 524
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 2 cut(s) 77, 401
AoxI GGCC 4 cut(s) 21, 78, 446, 477
ApeKI GCWGC 2 cut(s) 229, 281
ApoI RAATTY 2 cut(s) 203, 530
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 64, 293
AvaII GGWCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 241, 293
BccI CCATC 1 cut(s) 256
BceAI ACGGC 3 cut(s) 85, 93, 105
BciVI GTATCC 1 cut(s) 445
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 542
BfuI GTATCC 1 cut(s) 445
BisI GCNGC 2 cut(s) 230, 282
BlpI GCTNAGC 1 cut(s) 492
BlsI GCNGC 2 cut(s) 231, 283
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 246
BmsI GCATC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 415, 447
BpmI CTGGAG 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 492
BpuEI CTTGAG 3 cut(s) 146, 290, 417
BsaJI CCNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 241, 293
BshFI GGCC 4 cut(s) 23, 80, 448, 479
BsiHKAI GWGCWC 1 cut(s) 337
BsiSI CCGG 2 cut(s) 54, 449
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 4 cut(s) 23, 80, 448, 479
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 4 cut(s) 16, 69, 406, 484
Bsp1720I GCTNAGC 1 cut(s) 492
BspANI GGCC 4 cut(s) 23, 80, 448, 479
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 2 cut(s) 77, 401
BsrDI GCAATG 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 393
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 4 cut(s) 16, 69, 406, 484
Bst6I CTCTTC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 492
BstDSI CCRYGG 1 cut(s) 75
BstKTI GATC 4 cut(s) 19, 72, 409, 487
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 4 cut(s) 16, 69, 406, 484
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 359
BstSFI CTRYAG 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 241, 293
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 4 cut(s) 23, 80, 448, 479
BtgI CCRYGG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 413, 499
CviAII CATG 6 cut(s) 252, 256, 356, 361, 420, 488
CviQI GTAC 2 cut(s) 413, 499
DdeI CTNAG 1 cut(s) 492
DpnI GATC 4 cut(s) 18, 71, 408, 486
DpnII GATC 4 cut(s) 16, 69, 406, 484
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 337
Eco32I GATATC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 504
EcoICRI GAGCTC 1 cut(s) 335
EcoRV GATATC 1 cut(s) 428
EcoT22I ATGCAT 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 337
FaeI CATG 6 cut(s) 255, 259, 359, 364, 423, 491
FaiI YATR 8 cut(s) 253, 257, 297, 339, 357, 362, 421, 489
FatI CATG 6 cut(s) 251, 255, 355, 360, 419, 487
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 230, 282
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 2 cut(s) 230, 282
GluI GCNGC 2 cut(s) 230, 282
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 4 cut(s) 23, 80, 448, 479
HapII CCGG 2 cut(s) 54, 449
Hin1II CATG 6 cut(s) 255, 259, 359, 364, 423, 491
HpaII CCGG 2 cut(s) 54, 449
HphI GGTGA 2 cut(s) 64, 293
Hpy166II GTNNAC 1 cut(s) 162
Hpy188III TCNNGA 3 cut(s) 125, 143, 239
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 528
HpyCH4V TGCA 4 cut(s) 229, 255, 364, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 492
Hsp92II CATG 6 cut(s) 255, 259, 359, 364, 423, 491
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 4 cut(s) 16, 69, 406, 484
Lsp1109I GCAGC 2 cut(s) 241, 293
LweI GCATC 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 102
MalI GATC 4 cut(s) 18, 71, 408, 486
MboI GATC 4 cut(s) 16, 69, 406, 484
MboII GAAGA 3 cut(s) 122, 125, 146
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 6 cut(s) 203, 224, 261, 270, 396, 530
MnlI CCTC 3 cut(s) 235, 314, 441
Mph1103I ATGCAT 1 cut(s) 257
MseI TTAA 3 cut(s) 222, 368, 465
MspA1I CMGCKG 3 cut(s) 232, 284, 524
MspI CCGG 2 cut(s) 54, 449
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 4 cut(s) 16, 69, 406, 484
NlaIII CATG 6 cut(s) 255, 259, 359, 364, 423, 491
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 257
NspI RCATGY 1 cut(s) 359
PciI ACATGT 1 cut(s) 355
PkrI GCNGC 2 cut(s) 231, 283
PscI ACATGT 1 cut(s) 355
Psp124BI GAGCTC 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 245
PvuII CAGCTG 3 cut(s) 232, 284, 524
RsaI GTAC 2 cut(s) 414, 500
RsaNI GTAC 2 cut(s) 413, 499
SacI GAGCTC 1 cut(s) 337
SaqAI TTAA 3 cut(s) 222, 368, 465
SatI GCNGC 2 cut(s) 230, 282
Sau3AI GATC 4 cut(s) 16, 69, 406, 484
Sau96I GGNCC 1 cut(s) 245
SduI GDGCHC 1 cut(s) 337
SetI ASST 9 cut(s) 40, 150, 234, 286, 306, 312, 337, 504, 526
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 542
SinI GGWCC 1 cut(s) 245
SmlI CTYRAG 3 cut(s) 125, 305, 432
SmoI CTYRAG 3 cut(s) 125, 305, 432
Sse9I AATT 6 cut(s) 203, 224, 261, 270, 396, 530
SstI GAGCTC 1 cut(s) 337
TaqI TCGA 2 cut(s) 142, 331
TasI AATT 6 cut(s) 203, 224, 261, 270, 396, 530
Tru1I TTAA 3 cut(s) 222, 368, 465
Tru9I TTAA 3 cut(s) 222, 368, 465
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 2 cut(s) 229, 281
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 2 cut(s) 203, 530
XceI RCATGY 1 cut(s) 359
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.