RLG00000027807

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000095
Physical Location & Seq
Reverse (-)
15396819 .. 15400202
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027807

Sequence Viewer

Length: 993 bp
ATGGCTTATATACGTCAGTTTAGTACTCAACTAAGGTCAATCCTAAAACTTATTACCTTTTTCCCCATTCTGCATTTTCTTGGGGTAAAGAACACTGCTTTTGTTGAAACTCACTTCACTGAGAGCTTGTATCAACTTTTCAATCTAAACACAGGGGTTCAGAGTCAGTTTCCTTCCACAGAAGGTATCCCTGACCGTCGAACAAGTCAGCACCATAGCTACCTTCCTGAAATGGAGAAAAGATCTTGCCTAATTTCTAGTTCTGTTCCAGGAAAGGATGCGTACAAGTTGGTGGACAGAATCAGTGAGCTGCCGGATGAAATTCTGGTTAGAATCTTGTCTCTCTTGCCACTAAAGGAAGCTGGAGCTACCAGTACCCTTTCTCGGCGTTGGCTTTATATGTGGGCATCCACTAAAAATCTCAATTTTGATGCTGATGAAACTGTACGGCGTTATTATTGGGAGTACAACCAAGAACTCAAAGACCAGGAAAGCTCTAAATATGTAGATTGGGTCAATCATGTGGTGGAACAGCATAGAGAGCAGGAGGACTTGGAACAATTTAGGTTCGCGCAGGTCCACCAAAAGAATTTCCCTGTACTACCAAATCTCAAGAATTTAGAAGTAAGAGTCTGTGCAGATGCTTGCCGGAATACTCTTCATGTGTTAACCTCTTTCATGAAGGCATTTCCTAATTTGCAGAGGCTCGTTCTGAAGTTGGAATTCTCCTTTCCATTTAACCCAACAGAAGGAGAGAAAATGTTTAAAGGACTATGCTATGGCATTTACACTGAGAAATGTCCACATCATAACATCAAGGTTGTAGAAATACTAGGGACGGTCACTCTTAAGAGGATATTATCTCGTAAACTTAAAGCTGCTTACCTCTACTTTCAGTGCCTTTACTTTCAGCAGGCATATAACCGGATGAATATGTATGGTGTTGAAATTTTCTCATCGTCAAATATGGTGTTGAGTGCTGCAGCACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

331

Amino Acids

38.65

Weight (kDa)

8.97

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 101 - 139 5.4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 565
AccII CGCG 1 cut(s) 572
AcsI RAATTY 5 cut(s) 321, 589, 616, 722, 948
AcuI CTGAAG 1 cut(s) 734
AfaI GTAC 6 cut(s) 25, 284, 376, 447, 467, 600
AfiI CCNNNNNNNGG 2 cut(s) 384, 749
AflII CTTAAG 1 cut(s) 848
AgsI TTSAA 3 cut(s) 107, 142, 947
AjnI CCWGG 2 cut(s) 268, 486
AluBI AGCT 7 cut(s) 126, 219, 310, 362, 368, 495, 878
AluI AGCT 7 cut(s) 126, 219, 310, 362, 368, 495, 878
Alw26I GTCTC 1 cut(s) 345
ApeKI GCWGC 4 cut(s) 310, 878, 980, 983
ApoI RAATTY 5 cut(s) 321, 589, 616, 722, 948
AspLEI GCGC 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 577
AvaII GGWCC 1 cut(s) 577
BbvI GCAGC 3 cut(s) 297, 865, 967
BceAI ACGGC 1 cut(s) 464
BciT130I CCWGG 2 cut(s) 270, 488
BciVI GTATCC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 2 cut(s) 258, 833
BfmI CTRYAG 1 cut(s) 981
BfrI CTTAAG 1 cut(s) 848
BfuAI ACCTGC 1 cut(s) 565
BfuI GTATCC 1 cut(s) 197
BglII AGATCT 1 cut(s) 242
BisI GCNGC 4 cut(s) 311, 879, 981, 984
BlsI GCNGC 4 cut(s) 312, 880, 982, 985
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 2 cut(s) 270, 488
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 577
BmrFI CCNGG 2 cut(s) 270, 488
BmsI GCATC 4 cut(s) 268, 416, 421, 631
BpmI CTGGAG 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 596
BsaWI WCCGGW 1 cut(s) 924
Bsc4I CCNNNNNNNGG 2 cut(s) 384, 749
Bse1I ACTGG 1 cut(s) 372
BseBI CCWGG 2 cut(s) 270, 488
BseGI GGATG 4 cut(s) 283, 322, 407, 933
BseLI CCNNNNNNNGG 2 cut(s) 384, 749
BseMII CTCAG 2 cut(s) 111, 783
BseNI ACTGG 1 cut(s) 372
BseXI GCAGC 3 cut(s) 297, 865, 967
BsgI GTGCAG 1 cut(s) 657
Bsh1236I CGCG 1 cut(s) 572
BsiSI CCGG 3 cut(s) 314, 649, 925
BslFI GGGAC 1 cut(s) 850
BslI CCNNNNNNNGG 2 cut(s) 384, 749
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 850
Bsp143I GATC 1 cut(s) 242
BspCNI CTCAG 2 cut(s) 112, 784
BspFNI CGCG 1 cut(s) 572
BspHI TCATGA 1 cut(s) 678
BspMAI CTGCAG 1 cut(s) 985
BspMI ACCTGC 1 cut(s) 565
BspTI CTTAAG 1 cut(s) 848
BsrI ACTGG 1 cut(s) 372
BssMI GATC 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 270, 488
Bst4CI ACNGT 3 cut(s) 197, 445, 841
Bst6I CTCTTC 1 cut(s) 663
BstAFI CTTAAG 1 cut(s) 848
BstC8I GCNNGC 2 cut(s) 646, 915
BstDEI CTNAG 3 cut(s) 32, 120, 792
BstF5I GGATG 4 cut(s) 283, 322, 407, 933
BstFNI CGCG 1 cut(s) 572
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 1 cut(s) 245
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 541
BstNI CCWGG 2 cut(s) 270, 488
BstSCI CCNGG 2 cut(s) 268, 486
BstSFI CTRYAG 1 cut(s) 981
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 3 cut(s) 297, 865, 967
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuI GTATCC 1 cut(s) 197
BtsCI GGATG 4 cut(s) 283, 322, 407, 933
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 5 cut(s) 93, 117, 310, 789, 902
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 2 cut(s) 646, 915
CciI TCATGA 1 cut(s) 678
CfoI GCGC 1 cut(s) 574
Cfr13I GGNCC 1 cut(s) 577
Csp6I GTAC 6 cut(s) 24, 283, 375, 446, 466, 599
CviAII CATG 3 cut(s) 521, 662, 679
CviQI GTAC 6 cut(s) 24, 283, 375, 446, 466, 599
DdeI CTNAG 3 cut(s) 32, 120, 792
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
DraI TTTAAA 1 cut(s) 766
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 734
EcoRI GAATTC 1 cut(s) 722
EcoRII CCWGG 2 cut(s) 268, 486
FaeI CATG 3 cut(s) 524, 665, 682
FaqI GGGAC 1 cut(s) 850
FatI CATG 3 cut(s) 520, 661, 678
Fnu4HI GCNGC 4 cut(s) 311, 879, 981, 984
FokI GGATG 4 cut(s) 290, 329, 394, 940
Fsp4HI GCNGC 4 cut(s) 311, 879, 981, 984
FspBI CTAG 2 cut(s) 258, 833
GlaI GCGC 1 cut(s) 573
GluI GCNGC 4 cut(s) 311, 879, 981, 984
GsuI CTGGAG 1 cut(s) 384
HapII CCGG 3 cut(s) 314, 649, 925
HhaI GCGC 1 cut(s) 574
Hin1II CATG 3 cut(s) 524, 665, 682
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HincII GTYRAC 1 cut(s) 669
HindII GTYRAC 1 cut(s) 669
HinfI GANTC 4 cut(s) 163, 300, 333, 630
HpaI GTTAAC 1 cut(s) 669
HpaII CCGG 3 cut(s) 314, 649, 925
Hpy166II GTNNAC 5 cut(s) 295, 580, 669, 803, 869
Hpy188I TCNGA 2 cut(s) 162, 714
Hpy188III TCNNGA 3 cut(s) 227, 613, 679
Hpy8I GTNNAC 5 cut(s) 295, 580, 669, 803, 869
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 5 cut(s) 176, 183, 233, 676, 743
HpyCH4III ACNGT 3 cut(s) 197, 445, 841
HpyCH4IV ACGT 2 cut(s) 13, 988
HpyCH4V TGCA 4 cut(s) 73, 638, 700, 983
HpyF10VI GCNNNNNNNGC 1 cut(s) 541
HpyF3I CTNAG 3 cut(s) 32, 120, 792
HpySE526I ACGT 2 cut(s) 13, 988
Hsp92II CATG 3 cut(s) 524, 665, 682
HspAI GCGC 1 cut(s) 572
KspAI GTTAAC 1 cut(s) 669
Kzo9I GATC 1 cut(s) 242
LmnI GCTCC 1 cut(s) 365
Lsp1109I GCAGC 3 cut(s) 297, 865, 967
LweI GCATC 4 cut(s) 268, 416, 421, 631
MaeI CTAG 2 cut(s) 258, 833
MaeII ACGT 2 cut(s) 13, 988
MaeIII GTNAC 1 cut(s) 841
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 1 cut(s) 650
MflI RGATCY 1 cut(s) 242
MluCI AATT 9 cut(s) 252, 321, 424, 560, 589, 616, 694, 722, 948
MlyI GAGTC 2 cut(s) 172, 639
MmeI TCCRAC 1 cut(s) 699
MnlI CCTC 5 cut(s) 541, 682, 696, 846, 896
MseI TTAA 5 cut(s) 668, 738, 765, 849, 873
MspCI CTTAAG 1 cut(s) 848
MspI CCGG 3 cut(s) 314, 649, 925
MspR9I CCNGG 2 cut(s) 270, 488
MvaI CCWGG 2 cut(s) 270, 488
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 1 cut(s) 541
NdeII GATC 1 cut(s) 242
NlaIII CATG 3 cut(s) 524, 665, 682
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 841
PagI TCATGA 1 cut(s) 678
PfeI GAWTC 2 cut(s) 300, 333
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 4 cut(s) 312, 880, 982, 985
PleI GAGTC 2 cut(s) 171, 638
PpsI GAGTC 2 cut(s) 171, 638
Psp6I CCWGG 2 cut(s) 268, 486
PspGI CCWGG 2 cut(s) 268, 486
PspPI GGNCC 1 cut(s) 577
PstI CTGCAG 1 cut(s) 985
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 6 cut(s) 25, 284, 376, 447, 467, 600
RsaNI GTAC 6 cut(s) 24, 283, 375, 446, 466, 599
SaqAI TTAA 5 cut(s) 668, 738, 765, 849, 873
SatI GCNGC 4 cut(s) 311, 879, 981, 984
Sau3AI GATC 1 cut(s) 242
Sau96I GGNCC 1 cut(s) 577
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 2 cut(s) 172, 639
ScrFI CCNGG 2 cut(s) 270, 488
SfaNI GCATC 4 cut(s) 268, 416, 421, 631
SfcI CTRYAG 1 cut(s) 981
SinI GGWCC 1 cut(s) 577
SmlI CTYRAG 2 cut(s) 611, 848
SmoI CTYRAG 2 cut(s) 611, 848
Sse9I AATT 9 cut(s) 252, 321, 424, 560, 589, 616, 694, 722, 948
SspMI CTAG 2 cut(s) 258, 833
StyD4I CCNGG 2 cut(s) 268, 486
TaaI ACNGT 3 cut(s) 197, 445, 841
TaiI ACGT 2 cut(s) 16, 991
TaqI TCGA 1 cut(s) 199
TasI AATT 9 cut(s) 252, 321, 424, 560, 589, 616, 694, 722, 948
TatI WGTACW 3 cut(s) 23, 465, 598
TfiI GAWTC 2 cut(s) 300, 333
Tru1I TTAA 5 cut(s) 668, 738, 765, 849, 873
Tru9I TTAA 5 cut(s) 668, 738, 765, 849, 873
TscAI CASTG 5 cut(s) 100, 124, 310, 796, 902
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 4 cut(s) 310, 878, 980, 983
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 6 cut(s) 333, 453, 650, 667, 695, 944
TspRI CASTG 5 cut(s) 100, 124, 310, 796, 902
Vha464I CTTAAG 1 cut(s) 848
VpaK11BI GGWCC 1 cut(s) 577
XapI RAATTY 5 cut(s) 321, 589, 616, 722, 948
XspI CTAG 2 cut(s) 258, 833
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.