Rh3DG264000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000095
Physical Location & Seq
Forward (+)
26245185 .. 26248461
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG264000.1

Sequence Viewer

Length: 1467 bp
ATGTCAAACTCAATTATAAACAAAAGGGTGCGGGTGCCTTGTCTACCCTCCCCGGCCAAGATTAATTTCAACTTGAGCAAGATACAGAGGATTAAGAAGCCTGAGTCCAACAAGGTGGACCGAATCAGCGCCCTACCAGATGAAATTCTTGTGAATATAGTTGCCTTCTTGCCACTAGATGAAGCACAGGCTACGAGTATCCTTTCTAGGCGATGGCGTTATATCTGGAAGTCTGTGTTGGAGAATACTATGACTCTCAACTTTGATGCTGAGAAACATTTGTCCAATTTTGCATCCCGGGAAGAGTTGGCAATTCGTTGGTATGTCGATTGGGTGGATACAGTGTTGAACCAGTATACAGGCCGAAAAATGAAGCAGTTCAGGGTTTGTTATGATTTGGACAGCACGGTTTCAAGGTCGATTGATGAATGGATTCATTTTGCAATGACAAAGGGAGTTGAAATGCTTGAGTTAGACTTGTTAGAATATGGTGTTACTCGCCGTTTGGAGTATCCAATTTATACATTTCCCCACAGACTTTTAGGCATTGTGAAAGAATCTGCTTGGAAGCACATCTGTTCTGATGTTCCTTGGCTAAGTCCTTGTGCATGCATTGGCTTTAAGTCCCTCAAAGTTCTTAGTTTGAAATGTGTTGATGTGGATGGACAAGTACTTGAGTACATGTTTTCTAATTGTCCGGTTCTTGAACGATTATTACTAGGTTATTCCTCGAGCTTGGTTAGTCTAAGAGTTGTTGGTCCATCAATTGCATTGAAGTACTTAGAAATACGAGGATGTGCTAGACTTGAGAGCATTGAGATCTGTGACACAAACCTTGTTTCTTTTGTTTATTACGGAAATGAGATACACTTGATAGTTAGAAATGTACCACTCCTTGTTGAGGTATCAATTTGTGAGTCTTGTAATAATGATTACATACAGGTCGCCTTCACCCAACTCTCATGCTGTGTCTCTCAACTAGAGATTCTCAAACTAATTGATGTCATACTGCCCTACAAGAGGAATTCTGTATTTCCTATATTCACAAATCTCAAGCATTTGGAATTAAGATTTGATGAAGACGATGATTGCATTCTTCTTCATTTAACTTCTTTCATTAAGGCATCCCCTTGCTTGCACAACCTTGTGCTGGAGTTGTACCCTTTAACATGCCGAAGAGAAATAGAATTTAGAAAAGCTGCCAAATGCTCCCATGATTACCTAAAGGTAGTGGAAATATTTGGATATCATGGACGCAAAAGTGATTGTGAACTGGTCAAGTTCTTGACAGAGATTGCTGTTAATTTGGAGAAAATTGTTACTGATCCTGCTCATCCTGCTGAACGACATTACTGTTATCCTAAACACAGACGAAAGCCGGATATTGAAGTCGTGGCAAGGGCTGAACAGTCAAGTTATGATTATGCTACCATAGTAAAGAAAAAATTCCTTCGACTTGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

488

Amino Acids

56.42

Weight (kDa)

8.16

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 42 - 79 8e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 118 - 451 2.1e-40 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 141 - 382 6.7e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 34
AccI GTMKAC 2 cut(s) 43, 356
AciI CCGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 1319
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 4 cut(s) 144, 1024, 1187, 1445
AfaI GTAC 5 cut(s) 672, 680, 779, 888, 1160
AfiI CCNNNNNNNGG 3 cut(s) 901, 1020, 1150
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 8 cut(s) 70, 349, 414, 461, 646, 707, 775, 1388
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 221, 253
AluBI AGCT 2 cut(s) 735, 1199
AluI AGCT 2 cut(s) 735, 1199
Alw26I GTCTC 1 cut(s) 976
AlwI GGATC 1 cut(s) 1319
Ama87I CYCGRG 2 cut(s) 297, 730
AoxI GGCC 2 cut(s) 54, 361
ApeKI GCWGC 1 cut(s) 1199
ApoI RAATTY 4 cut(s) 144, 1024, 1187, 1445
AseI ATTAAT 1 cut(s) 63
Asp700I GAANNNNTTC 3 cut(s) 377, 432, 1445
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 118, 758
AsuC2I CCSGG 3 cut(s) 53, 298, 299
AsuHPI GGTGA 1 cut(s) 943
AvaI CYCGRG 2 cut(s) 297, 730
AvaII GGWCC 2 cut(s) 118, 758
BanI GGYRCC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 1086
BbvI GCAGC 1 cut(s) 1186
BccI CCATC 3 cut(s) 207, 656, 769
BceAI ACGGC 1 cut(s) 486
BciVI GTATCC 3 cut(s) 209, 331, 522
BcnI CCSGG 3 cut(s) 53, 298, 299
BcoDI GTCTC 1 cut(s) 976
BfaI CTAG 5 cut(s) 176, 207, 719, 801, 980
BfoI RGCGCY 1 cut(s) 132
BfuI GTATCC 3 cut(s) 209, 331, 522
BglII AGATCT 1 cut(s) 819
BisI GCNGC 1 cut(s) 1200
BlsI GCNGC 1 cut(s) 1201
BmcAI AGTACT 2 cut(s) 672, 779
Bme1390I CCNGG 3 cut(s) 53, 298, 299
Bme18I GGWCC 2 cut(s) 118, 758
BmeT110I CYCGRG 2 cut(s) 297, 730
BmgT120I GGNCC 2 cut(s) 118, 758
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 53, 298, 299
BmsI GCATC 3 cut(s) 256, 302, 1133
BpiI GAAGAC 1 cut(s) 1086
BpmI CTGGAG 1 cut(s) 1172
BpuEI CTTGAG 5 cut(s) 94, 488, 695, 827, 1037
BpuMI CCSGG 3 cut(s) 53, 298, 299
BsaJI CCNNGG 3 cut(s) 51, 297, 590
BsaWI WCCGGW 1 cut(s) 697
Bsc4I CCNNNNNNNGG 3 cut(s) 901, 1020, 1150
Bse1I ACTGG 2 cut(s) 352, 1278
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 3 cut(s) 51, 297, 590
BseGI GGATG 5 cut(s) 293, 667, 800, 1124, 1333
BseLI CCNNNNNNNGG 3 cut(s) 901, 1020, 1150
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 2 cut(s) 93, 261
BseNI ACTGG 2 cut(s) 352, 1278
BseXI GCAGC 1 cut(s) 1186
BshFI GGCC 2 cut(s) 56, 363
BshNI GGYRCC 1 cut(s) 34
BsiHKCI CYCGRG 2 cut(s) 297, 730
BsiSI CCGG 4 cut(s) 53, 298, 698, 1379
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 3 cut(s) 901, 1020, 1150
BsmAI GTCTC 1 cut(s) 976
BsmFI GGGAC 1 cut(s) 610
BsmI GAATGC 1 cut(s) 1092
BsnI GGCC 2 cut(s) 56, 363
BsoBI CYCGRG 2 cut(s) 297, 730
Bsp143I GATC 2 cut(s) 819, 1324
BspACI CCGC 1 cut(s) 31
BspANI GGCC 2 cut(s) 56, 363
BspCNI CTCAG 2 cut(s) 94, 262
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 1319
BspT107I GGYRCC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 2 cut(s) 352, 1278
BssECI CCNNGG 3 cut(s) 51, 297, 590
BssMI GATC 2 cut(s) 819, 1324
BssNAI GTATAC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 590
Bst1107I GTATAC 1 cut(s) 357
Bst4CI ACNGT 4 cut(s) 343, 409, 1355, 1410
Bst6I CTCTTC 2 cut(s) 297, 1171
BstC8I GCNNGC 2 cut(s) 610, 1136
BstDEI CTNAG 6 cut(s) 102, 270, 596, 638, 746, 781
BstENI CCTNNNNNAGG 2 cut(s) 899, 1018
BstF5I GGATG 5 cut(s) 293, 667, 800, 1124, 1333
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 2 cut(s) 822, 1327
BstMAI GTCTC 1 cut(s) 976
BstMBI GATC 2 cut(s) 819, 1324
BstMWI GCNNNNNNNGC 1 cut(s) 1337
BstNSI RCATGY 3 cut(s) 612, 685, 1173
BstSCI CCNGG 3 cut(s) 51, 296, 297
BstV1I GCAGC 1 cut(s) 1186
BstV2I GAAGAC 1 cut(s) 1086
BstX2I RGATCY 1 cut(s) 819
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 1 cut(s) 819
BstZ17I GTATAC 1 cut(s) 357
BsuI GTATCC 3 cut(s) 209, 331, 522
BsuRI GGCC 2 cut(s) 56, 363
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 5 cut(s) 293, 667, 800, 1124, 1333
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 610, 1136
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 118, 758
Cfr9I CCCGGG 1 cut(s) 297
CseI GACGC 1 cut(s) 1263
Csp6I GTAC 5 cut(s) 671, 679, 778, 887, 1159
CviAII CATG 6 cut(s) 609, 682, 963, 1170, 1214, 1250
CviQI GTAC 5 cut(s) 671, 679, 778, 887, 1159
DdeI CTNAG 6 cut(s) 102, 270, 596, 638, 746, 781
DpnI GATC 2 cut(s) 821, 1326
DpnII GATC 2 cut(s) 819, 1324
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 2 cut(s) 297, 1171
EarI CTCTTC 2 cut(s) 297, 1171
Eco130I CCWWGG 1 cut(s) 590
Eco32I GATATC 1 cut(s) 1247
Eco47I GGWCC 2 cut(s) 118, 758
Eco88I CYCGRG 2 cut(s) 297, 730
EcoNI CCTNNNNNAGG 2 cut(s) 899, 1018
EcoRI GAATTC 1 cut(s) 1024
EcoRV GATATC 1 cut(s) 1247
EcoT14I CCWWGG 1 cut(s) 590
EcoT22I ATGCAT 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 590
FaeI CATG 6 cut(s) 612, 685, 966, 1173, 1217, 1253
FaqI GGGAC 1 cut(s) 610
FatI CATG 6 cut(s) 608, 681, 962, 1169, 1213, 1249
FauI CCCGC 1 cut(s) 24
FblI GTMKAC 2 cut(s) 43, 356
Fnu4HI GCNGC 1 cut(s) 1200
FokI GGATG 5 cut(s) 280, 674, 807, 1111, 1320
Fsp4HI GCNGC 1 cut(s) 1200
FspBI CTAG 5 cut(s) 176, 207, 719, 801, 980
GlaI GCGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 1200
GsuI CTGGAG 1 cut(s) 1172
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 2 cut(s) 56, 363
HapII CCGG 4 cut(s) 53, 298, 698, 1379
HgaI GACGC 1 cut(s) 1263
HhaI GCGC 1 cut(s) 131
Hin1II CATG 6 cut(s) 612, 685, 966, 1173, 1217, 1253
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 7 cut(s) 104, 123, 253, 433, 557, 917, 985
HpaII CCGG 4 cut(s) 53, 298, 698, 1379
HphI GGTGA 1 cut(s) 943
Hpy166II GTNNAC 4 cut(s) 44, 118, 357, 1271
Hpy188I TCNGA 1 cut(s) 583
Hpy188III TCNNGA 3 cut(s) 226, 704, 1285
Hpy8I GTNNAC 4 cut(s) 44, 118, 357, 1271
HpyAV CCTTC 3 cut(s) 175, 958, 1460
HpyCH4III ACNGT 4 cut(s) 343, 409, 1355, 1410
HpyCH4V TGCA 7 cut(s) 293, 443, 608, 612, 770, 1092, 1138
HpyF10VI GCNNNNNNNGC 1 cut(s) 1337
HpyF3I CTNAG 6 cut(s) 102, 270, 596, 638, 746, 781
Hsp92II CATG 6 cut(s) 612, 685, 966, 1173, 1217, 1253
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 2 cut(s) 819, 1324
LmnI GCTCC 1 cut(s) 1214
Lsp1109I GCAGC 1 cut(s) 1186
LweI GCATC 3 cut(s) 256, 302, 1133
MaeI CTAG 5 cut(s) 176, 207, 719, 801, 980
MaeIII GTNAC 3 cut(s) 493, 824, 1318
MalI GATC 2 cut(s) 821, 1326
MboI GATC 2 cut(s) 819, 1324
MboII GAAGA 5 cut(s) 314, 1088, 1091, 1091, 1188
MfeI CAATTG 1 cut(s) 765
MflI RGATCY 1 cut(s) 819
MlyI GAGTC 3 cut(s) 113, 247, 926
MmeI TCCRAC 2 cut(s) 132, 219
MnlI CCTC 7 cut(s) 58, 81, 638, 739, 785, 895, 1014
Mph1103I ATGCAT 1 cut(s) 614
MroXI GAANNNNTTC 3 cut(s) 377, 432, 1445
MseI TTAA 8 cut(s) 63, 93, 621, 1067, 1106, 1119, 1166, 1302
MspI CCGG 4 cut(s) 53, 298, 698, 1379
MspR9I CCNGG 3 cut(s) 53, 298, 299
MunI CAATTG 1 cut(s) 765
Mva1269I GAATGC 1 cut(s) 1092
MwoI GCNNNNNNNGC 1 cut(s) 1337
NciI CCSGG 3 cut(s) 53, 298, 299
NdeII GATC 2 cut(s) 819, 1324
NlaIII CATG 6 cut(s) 612, 685, 966, 1173, 1217, 1253
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 824
NsiI ATGCAT 1 cut(s) 614
NspI RCATGY 3 cut(s) 612, 685, 1173
PaeI GCATGC 1 cut(s) 612
PaeR7I CTCGAG 1 cut(s) 730
PciI ACATGT 1 cut(s) 681
PctI GAATGC 1 cut(s) 1092
PdmI GAANNNNTTC 3 cut(s) 377, 432, 1445
PfeI GAWTC 4 cut(s) 123, 433, 557, 985
PkrI GCNGC 1 cut(s) 1201
PleI GAGTC 3 cut(s) 112, 247, 925
PpsI GAGTC 3 cut(s) 112, 247, 925
PscI ACATGT 1 cut(s) 681
PshBI ATTAAT 1 cut(s) 63
PsiI TTATAA 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 2 cut(s) 118, 758
PspXI VCTCGAGB 1 cut(s) 730
PsrI GAACNNNNNNTAC 2 cut(s) 699, 731
PsuI RGATCY 1 cut(s) 819
RsaI GTAC 5 cut(s) 672, 680, 779, 888, 1160
RsaNI GTAC 5 cut(s) 671, 679, 778, 887, 1159
SaqAI TTAA 8 cut(s) 63, 93, 621, 1067, 1106, 1119, 1166, 1302
SatI GCNGC 1 cut(s) 1200
Sau3AI GATC 2 cut(s) 819, 1324
Sau96I GGNCC 2 cut(s) 118, 758
ScaI AGTACT 2 cut(s) 672, 779
SchI GAGTC 3 cut(s) 113, 247, 926
ScrFI CCNGG 3 cut(s) 53, 298, 299
SfaNI GCATC 3 cut(s) 256, 302, 1133
Sfr274I CTCGAG 1 cut(s) 730
SinI GGWCC 2 cut(s) 118, 758
SlaI CTCGAG 1 cut(s) 730
SmaI CCCGGG 1 cut(s) 299
SmlI CTYRAG 6 cut(s) 73, 467, 674, 730, 806, 1052
SmoI CTYRAG 6 cut(s) 73, 467, 674, 730, 806, 1052
SphI GCATGC 1 cut(s) 612
SsiI CCGC 1 cut(s) 31
SspI AATATT 1 cut(s) 1239
SspMI CTAG 5 cut(s) 176, 207, 719, 801, 980
StyD4I CCNGG 3 cut(s) 51, 296, 297
StyI CCWWGG 1 cut(s) 590
TaaI ACNGT 4 cut(s) 343, 409, 1355, 1410
TaqI TCGA 4 cut(s) 327, 419, 731, 1453
TaqII GACCGA 1 cut(s) 135
TatI WGTACW 3 cut(s) 670, 678, 777
TfiI GAWTC 4 cut(s) 123, 433, 557, 985
Tru1I TTAA 8 cut(s) 63, 93, 621, 1067, 1106, 1119, 1166, 1302
Tru9I TTAA 8 cut(s) 63, 93, 621, 1067, 1106, 1119, 1166, 1302
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 824
TseI GCWGC 1 cut(s) 1199
Tsp45I GTSAC 1 cut(s) 824
TspDTI ATGAA 8 cut(s) 156, 195, 386, 425, 441, 1091, 1092, 1105
TspGWI ACGGA 1 cut(s) 870
TspMI CCCGGG 1 cut(s) 297
TspRI CASTG 1 cut(s) 348
VpaK11BI GGWCC 2 cut(s) 118, 758
VspI ATTAAT 1 cut(s) 63
XagI CCTNNNNNAGG 2 cut(s) 899, 1018
XapI RAATTY 4 cut(s) 144, 1024, 1187, 1445
XceI RCATGY 3 cut(s) 612, 685, 1173
XhoI CTCGAG 1 cut(s) 730
XmaI CCCGGG 1 cut(s) 297
XmiI GTMKAC 2 cut(s) 43, 356
XmnI GAANNNNTTC 3 cut(s) 377, 432, 1445
XspI CTAG 5 cut(s) 176, 207, 719, 801, 980
ZrmI AGTACT 2 cut(s) 672, 779
Zsp2I ATGCAT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.