RLG00000025816

diphthine-ammonia ligase activity

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
48469382 .. 48472807
3426 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025816

Sequence Viewer

Length: 741 bp
ATGAAGAAGAGAAGAGCAACCTTTCAATCTGTGGAGCACGAGGTTAAGAACAAGAGTAAGAGGAGAAGGAAAAGTAGGGTTGAATACAACATGCTGGACAGGGTCAGTGCATTGCCCGATGACATTCTTGTTAGTTTAGTGTCCCGCTTGCCGCTAAAGGAAGCAGTAGCTACCAGTGTCCTTTCTAGGCGATGGCAGAATGTGGGACTGTCTACTATGACCCTTAGGTTTGATGCTGTTGACTTCTCAATTGACAATAATTTACGCCACTACTTTCGCCAACCAAAAGAATTTAAAGAGCAGGAGAGCTGGAATTACATCAATTGGGTGAATCATGTGGTGCAACAGCATAGAGGCGAACATATAGAAGAATTCAGGATTAGCTTCTGTTTAGATAGTCGCTTTTCAAGTTCCATTAATGAATGGATTCAATTTGCAATGGAAAACAGTGTTGAAATGCTTGAATTGGATTTTTATCCAGAAGTTTTTATTAGATTTGAAGATTATACATTTCCCCACAAACTTTTGGGGATCTGCACTCCAACTCTCAATACTCTTCCTTCTCAAGATGCTTTTCTTCTTCAAAGTGACGGCGACGTTGCCGTCAAAGAGGCCGTGGTGGTCCCGTCTCCGATGCCGGGATATGGTTCGACCGTCCGAGTAAATATGCAATGGAGTCAGAAATCTGAGTTTTCAGCTCCATTCTCTAACATTAGGGGGAGCATCTGGATTACGGGTTGA

Protein Analysis

247

Amino Acids

28.72

Weight (kDa)

7.8

Isoelectric Point (pI)

64.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AccI GTMKAC 1 cut(s) 212
AciI CCGC 2 cut(s) 145, 152
AclWI GGATC 1 cut(s) 539
AcsI RAATTY 2 cut(s) 290, 371
AfiI CCNNNNNNNGG 2 cut(s) 638, 644
AgsI TTSAA 8 cut(s) 26, 83, 408, 431, 455, 464, 500, 584
AluBI AGCT 4 cut(s) 170, 309, 384, 698
AluI AGCT 4 cut(s) 170, 309, 384, 698
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 633
AlwI GGATC 1 cut(s) 539
AoxI GGCC 1 cut(s) 612
ApoI RAATTY 2 cut(s) 290, 371
AseI ATTAAT 1 cut(s) 417
Asp700I GAANNNNTTC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 622
AsuC2I CCSGG 1 cut(s) 639
AsuHPI GGTGA 1 cut(s) 340
AvaII GGWCC 1 cut(s) 622
AxyI CCTNAGG 1 cut(s) 224
BauI CACGAG 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 1 cut(s) 186
BceAI ACGGC 3 cut(s) 587, 599, 607
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 633
BfaI CTAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 622
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 4 cut(s) 223, 559, 624, 732
BpuEI CTTGAG 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 639
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 615
Bsc4I CCNNNNNNNGG 2 cut(s) 638, 644
Bse1I ACTGG 1 cut(s) 174
Bse21I CCTNAGG 1 cut(s) 224
Bse3DI GCAATG 3 cut(s) 110, 444, 677
Bse8I GATNNNNATC 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 615
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 638, 644
BseMI GCAATG 3 cut(s) 110, 444, 677
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 520
Bsh1285I CGRYCG 1 cut(s) 654
BshFI GGCC 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 654
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 638
BslFI GGGAC 3 cut(s) 127, 219, 608
BslI CCNNNNNNNGG 2 cut(s) 638, 644
BsmAI GTCTC 1 cut(s) 633
BsmBI CGTCTC 1 cut(s) 633
BsmFI GGGAC 3 cut(s) 127, 219, 608
BsnI GGCC 1 cut(s) 614
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 531
BspACI CCGC 2 cut(s) 145, 152
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 1 cut(s) 679
BspLI GGNNCC 1 cut(s) 624
BspPI GGATC 1 cut(s) 539
BspQI GCTCTTC 1 cut(s) 7
BsrDI GCAATG 3 cut(s) 110, 444, 677
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 1 cut(s) 531
BssSI CACGAG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 210, 449, 655
Bst6I CTCTTC 3 cut(s) 2, 7, 561
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 224, 687
BstDSI CCRYGG 1 cut(s) 615
BstKTI GATC 1 cut(s) 534
BstMAI GTCTC 1 cut(s) 633
BstMBI GATC 1 cut(s) 531
BstMCI CGRYCG 1 cut(s) 654
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 637
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
Bsu36I CCTNAGG 1 cut(s) 224
BsuRI GGCC 1 cut(s) 614
BtgI CCRYGG 1 cut(s) 615
BtgZI GCGATG 1 cut(s) 205
BtsIMutI CAGTG 3 cut(s) 112, 181, 454
Cac8I GCNNGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 622
CviAII CATG 2 cut(s) 91, 335
CviJI RGCY 5 cut(s) 170, 309, 384, 614, 698
CviKI_1 RGCY 5 cut(s) 170, 309, 384, 614, 698
DdeI CTNAG 2 cut(s) 224, 687
DpnI GATC 1 cut(s) 533
DpnII GATC 1 cut(s) 531
DraI TTTAAA 1 cut(s) 295
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 3 cut(s) 2, 7, 561
EarI CTCTTC 3 cut(s) 2, 7, 561
Eco47I GGWCC 1 cut(s) 622
Eco81I CCTNAGG 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 633
FaeI CATG 2 cut(s) 94, 338
FaiI YATR 9 cut(s) 92, 218, 336, 351, 363, 365, 507, 645, 668
FaqI GGGAC 3 cut(s) 127, 219, 608
FatI CATG 2 cut(s) 90, 334
FauI CCCGC 1 cut(s) 152
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 1 cut(s) 186
GluI GCNGC 1 cut(s) 152
HaeIII GGCC 1 cut(s) 614
HapII CCGG 1 cut(s) 638
Hin1II CATG 2 cut(s) 94, 338
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 3 cut(s) 331, 427, 676
HpaII CCGG 1 cut(s) 638
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 2 cut(s) 213, 241
Hpy188I TCNGA 4 cut(s) 633, 659, 681, 688
Hpy188III TCNNGA 4 cut(s) 376, 479, 566, 727
Hpy8I GTNNAC 2 cut(s) 213, 241
Hpy99I CGWCG 1 cut(s) 599
HpyAV CCTTC 2 cut(s) 60, 570
HpyCH4III ACNGT 3 cut(s) 210, 449, 655
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 5 cut(s) 110, 343, 437, 537, 670
HpyF3I CTNAG 2 cut(s) 224, 687
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 2 cut(s) 94, 338
Kzo9I GATC 1 cut(s) 531
LguI GCTCTTC 1 cut(s) 7
LmnI GCTCC 3 cut(s) 34, 703, 720
LpnPI CCDG 9 cut(s) 80, 85, 187, 287, 295, 361, 492, 651, 712
LweI GCATC 4 cut(s) 223, 559, 624, 732
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 1 cut(s) 587
MalI GATC 1 cut(s) 533
MboI GATC 1 cut(s) 531
MboII GAAGA 8 cut(s) 16, 19, 24, 380, 512, 548, 569, 572
MfeI CAATTG 2 cut(s) 249, 322
MflI RGATCY 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 8 cut(s) 249, 259, 290, 313, 322, 371, 431, 464
MlyI GAGTC 1 cut(s) 685
MmeI TCCRAC 1 cut(s) 566
MnlI CCTC 4 cut(s) 34, 54, 347, 604
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 3 cut(s) 45, 294, 417
MspI CCGG 1 cut(s) 638
MspR9I CCNGG 1 cut(s) 639
MunI CAATTG 2 cut(s) 249, 322
NciI CCSGG 1 cut(s) 639
NdeII GATC 1 cut(s) 531
NlaIII CATG 2 cut(s) 94, 338
NlaIV GGNNCC 1 cut(s) 624
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 2 cut(s) 331, 427
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 153
PleI GAGTC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 684
PshBI ATTAAT 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 1 cut(s) 622
PsuI RGATCY 1 cut(s) 531
PsyI GACNNNGTC 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 7
SaqAI TTAA 3 cut(s) 45, 294, 417
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 1 cut(s) 531
Sau96I GGNCC 1 cut(s) 622
SchI GAGTC 1 cut(s) 685
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 1 cut(s) 39
SetI ASST 8 cut(s) 23, 45, 172, 230, 311, 386, 600, 700
SfaNI GCATC 4 cut(s) 223, 559, 624, 732
SinI GGWCC 1 cut(s) 622
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 8 cut(s) 249, 259, 290, 313, 322, 371, 431, 464
SsiI CCGC 2 cut(s) 145, 152
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 637
TaaI ACNGT 3 cut(s) 210, 449, 655
TaiI ACGT 1 cut(s) 600
TaqI TCGA 1 cut(s) 650
TasI AATT 8 cut(s) 249, 259, 290, 313, 322, 371, 431, 464
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 2 cut(s) 331, 427
Tru1I TTAA 3 cut(s) 45, 294, 417
Tru9I TTAA 3 cut(s) 45, 294, 417
TscAI CASTG 3 cut(s) 112, 181, 454
TseFI GTSAC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 2 cut(s) 17, 435
TspRI CASTG 3 cut(s) 112, 181, 454
Tth111I GACNNNGTC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 622
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 2 cut(s) 290, 371
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.