MD02G1024500.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000095
Physical Location & Seq
Reverse (-)
1819443 .. 1821899
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1024500.v1.1.491

Sequence Viewer

Length: 1404 bp
ATGGAGACGAACACCTCTCAACCACTCAAGGATGATGGGCACAGCTGGGCCATGCTGCAGGACCGAATCAGTAATTTACCACCCGAAATCCTTGTCTGTATAGTATCACTCTTGCCGCTAAAGGAAGCAGCAGCTACTAGTATTCTTTCAAGGCGATGGCGCCATGTATGGGCATCTACTACGACTCTCAGTTTTGACGCTGTTAACTTTGATGTTGGCGATGGTACTATCACCACTACTATACAACGCTTCTTGAAGCTCGAGAAACAAGCGAGAGACCAGGAAAGCCGCCTCTACGTCAATTGGGTCGATCACATTCTGGGCCAACATAGAGGCCAATGCATTGAACGCTTCGGGGTTTGCTTTTTTCTGCAAAGCGACTTTGCAGGTTCCATTGCCAAATGGATCCAATTTGCAATGGAAAAGAGGGTTCAAATACTTGAGTTGGAGCTTTGGACAGACTCAATAGCTTGCCTTGATGATGACTACACATTTCCCCACAAGCTACTATTGGGTCCGGAAAAGCAGAAGGGCCTGTTTTCTAACCTTCCAAGCCTACGCCCTTGTGGATACATTCTAGAACGTTTGTCGCTGAGTTTTGCCAAAGATTTAGGCAAGCTAAGAGTGATAGGTCCCTCCATCGCGTTGAAATATTTAGAGATAACGTATTGCCTTGATCTCAGGTTCATTGAGATCTCTGGTGCAAACATTGTCTCCTTTATTTATTGTGGACCGATAAGAGATTTGAGTTTGAATAATGTGCCCCTGCTGGTTGAGGTATCCATTTACAAGTGGGGCACTTTTGCTGAATTCATAAGGCTTGCGTTCAGTCAACTCTCATGCTGTCTTTCTCATTTAGAGACCCTGAAGCTGGATATCAGGAAAGCGGTTAGCATACTTATCCCATGTTATTTGGTTGAGATCAAGTATTGTCGCGTCCCTTACTCAGTTGTTGTTGGCTTTCAGGTCTACAATCAGAATCATGCGTTTCCCGCGTTATCAAATCTAAAGCATTTGGAATTATTAGTGGATGCCGACTACTGTCTGTCCCTTGGTCACTTAGCTTCTTTCATGAAGGCAGCTCCTGACTTGCGCAGCCTTGTTTTGGGGTTGGAATTTGGAACCTCCAACGAGGACATGGCAATACTAGAGAAAGTTTCCAAACAACCCCATCACTGCCTCAAGGTAGGTGGTAGAAATAGCAGGGTATCGGGGTCACAGGTGTTGCGTAAAGCATGTCAGGTACTTGGTGAAGAATGTTGTTGCACTAGAGAAGATTGTTATAATTCCTGTCCGGTTTTGGTGTTGGCCTACGGGAATCGAGATCAATTACCTACTGGAGAACGAGGAAGCGAATGCAAGAGATCATGCCATCCAACACCTCAAGAAAAAAGTGCCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

468

Amino Acids

52.58

Weight (kDa)

7.11

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 23 - 59 5.4e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 191 - 382 2.1e-08 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1284
Acc16I TGCGCA 1 cut(s) 1094
Acc36I ACCTGC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 969
AccII CGCG 3 cut(s) 644, 936, 995
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 4 cut(s) 116, 289, 887, 993
AclI AACGTT 1 cut(s) 583
AclWI GGATC 2 cut(s) 400, 413
AcsI RAATTY 2 cut(s) 809, 1115
AcuI CTGAAG 1 cut(s) 887
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 2 cut(s) 226, 1245
AfiI CCNNNNNNNGG 3 cut(s) 169, 871, 1105
AgsI TTSAA 6 cut(s) 150, 256, 347, 434, 649, 754
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 1 cut(s) 279
Alw26I GTCTC 3 cut(s) 270, 718, 854
AlwI GGATC 2 cut(s) 400, 413
AlwNI CAGNNNCTG 1 cut(s) 1085
Ama87I CYCGRG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 5 cut(s) 48, 322, 334, 532, 1308
ApeKI GCWGC 5 cut(s) 55, 128, 131, 1079, 1095
ApoI RAATTY 2 cut(s) 809, 1115
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AspLEI GCGC 2 cut(s) 162, 1095
AspS9I GGNCC 7 cut(s) 48, 61, 322, 515, 532, 632, 731
AsuHPI GGTGA 2 cut(s) 223, 1262
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 4 cut(s) 61, 515, 632, 731
BaeGI GKGCMC 3 cut(s) 42, 765, 800
BamHI GGATCC 1 cut(s) 405
BanI GGYRCC 1 cut(s) 159
BbvI GCAGC 5 cut(s) 42, 140, 143, 1091, 1107
BccI CCATC 6 cut(s) 29, 150, 215, 647, 1179, 1380
BciT130I CCWGG 1 cut(s) 281
BciVI GTATCC 2 cut(s) 563, 790
BcoDI GTCTC 3 cut(s) 270, 718, 854
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 5 cut(s) 138, 578, 1148, 1269, 1402
BfmI CTRYAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 377
BfuI GTATCC 2 cut(s) 563, 790
BglII AGATCT 1 cut(s) 693
BisI GCNGC 7 cut(s) 56, 116, 129, 132, 289, 1080, 1096
BlsI GCNGC 7 cut(s) 57, 117, 130, 133, 290, 1081, 1097
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 4 cut(s) 61, 515, 632, 731
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 7 cut(s) 48, 61, 322, 515, 532, 632, 731
BmiI GGNNCC 6 cut(s) 161, 391, 407, 516, 634, 1123
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 2 cut(s) 182, 1021
BoxI GACNNNNGTC 1 cut(s) 1041
BpmI CTGGAG 1 cut(s) 1359
BpuEI CTTGAG 4 cut(s) 11, 461, 1166, 1368
BsaHI GRCGYC 1 cut(s) 160
BsaI GGTCTC 2 cut(s) 270, 854
BsaJI CCNNGG 1 cut(s) 1051
BsaWI WCCGGW 2 cut(s) 517, 1294
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 871, 1105
Bse1I ACTGG 1 cut(s) 1342
Bse3DI GCAATG 2 cut(s) 393, 423
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 1051
BseGI GGATG 3 cut(s) 37, 1036, 1372
BseLI CCNNNNNNNGG 3 cut(s) 169, 871, 1105
BseMI GCAATG 2 cut(s) 393, 423
BseMII CTCAG 4 cut(s) 202, 584, 694, 960
BseNI ACTGG 1 cut(s) 1342
BseSI GKGCMC 3 cut(s) 42, 765, 800
BseXI GCAGC 5 cut(s) 42, 140, 143, 1091, 1107
BseYI CCCAGC 1 cut(s) 45
Bsh1236I CGCG 3 cut(s) 644, 936, 995
BshFI GGCC 5 cut(s) 50, 324, 336, 534, 1310
BshNI GGYRCC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 518, 1295
BslFI GGGAC 3 cut(s) 618, 923, 1033
BslI CCNNNNNNNGG 3 cut(s) 169, 871, 1105
BsmAI GTCTC 3 cut(s) 270, 718, 854
BsmFI GGGAC 3 cut(s) 618, 923, 1033
BsmI GAATGC 1 cut(s) 1361
BsnI GGCC 5 cut(s) 50, 324, 336, 534, 1310
Bso31I GGTCTC 2 cut(s) 270, 854
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 3 cut(s) 42, 765, 800
Bsp13I TCCGGA 1 cut(s) 517
Bsp143I GATC 7 cut(s) 310, 405, 676, 693, 921, 1324, 1364
BspACI CCGC 4 cut(s) 116, 289, 887, 993
BspANI GGCC 5 cut(s) 50, 324, 336, 534, 1310
BspCNI CTCAG 4 cut(s) 201, 585, 693, 959
BspEI TCCGGA 1 cut(s) 517
BspFNI CGCG 3 cut(s) 644, 936, 995
BspHI TCATGA 1 cut(s) 1071
BspLI GGNNCC 6 cut(s) 161, 391, 407, 516, 634, 1123
BspMAI CTGCAG 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 377
BspPI GGATC 2 cut(s) 400, 413
BspT107I GGYRCC 1 cut(s) 159
BspTNI GGTCTC 2 cut(s) 270, 854
BsrDI GCAATG 2 cut(s) 393, 423
BsrI ACTGG 1 cut(s) 1342
BssECI CCNNGG 1 cut(s) 1051
BssMI GATC 7 cut(s) 310, 405, 676, 693, 921, 1324, 1364
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 1051
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 1043
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 4 cut(s) 472, 617, 822, 1399
BstDEI CTNAG 6 cut(s) 188, 593, 620, 680, 946, 1060
BstF5I GGATG 3 cut(s) 37, 1036, 1372
BstFNI CGCG 3 cut(s) 644, 936, 995
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 2 cut(s) 162, 1095
BstKTI GATC 7 cut(s) 313, 408, 679, 696, 924, 1327, 1367
BstMAI GTCTC 3 cut(s) 270, 718, 854
BstMBI GATC 7 cut(s) 310, 405, 676, 693, 921, 1324, 1364
BstMWI GCNNNNNNNGC 2 cut(s) 348, 992
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 1239
BstPAI GACNNNNGTC 1 cut(s) 1041
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 56
BstSLI GKGCMC 3 cut(s) 42, 765, 800
BstUI CGCG 3 cut(s) 644, 936, 995
BstV1I GCAGC 5 cut(s) 42, 140, 143, 1091, 1107
BstX2I RGATCY 2 cut(s) 405, 693
BstYI RGATCY 2 cut(s) 405, 693
BsuI GTATCC 2 cut(s) 563, 790
BsuRI GGCC 5 cut(s) 50, 324, 336, 534, 1310
BtgZI GCGATG 3 cut(s) 169, 234, 625
BtsCI GGATG 3 cut(s) 37, 1036, 1372
BtsI GCAGTG 1 cut(s) 1174
BtsIMutI CAGTG 1 cut(s) 1174
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 4 cut(s) 472, 617, 822, 1399
CaiI CAGNNNCTG 1 cut(s) 1085
CciI TCATGA 1 cut(s) 1071
CfoI GCGC 2 cut(s) 162, 1095
Cfr13I GGNCC 7 cut(s) 48, 61, 322, 515, 532, 632, 731
CseI GACGC 2 cut(s) 206, 925
Csp6I GTAC 2 cut(s) 225, 1244
CspCI CAANNNNNGTGG 2 cut(s) 1171, 1206
CviAII CATG 9 cut(s) 52, 164, 840, 906, 983, 1072, 1138, 1236, 1368
CviQI GTAC 2 cut(s) 225, 1244
DdeI CTNAG 6 cut(s) 188, 593, 620, 680, 946, 1060
DinI GGCGCC 1 cut(s) 161
DpnI GATC 7 cut(s) 312, 407, 678, 695, 923, 1326, 1366
DpnII GATC 7 cut(s) 310, 405, 676, 693, 921, 1324, 1364
Eco130I CCWWGG 1 cut(s) 1051
Eco31I GGTCTC 2 cut(s) 270, 854
Eco32I GATATC 1 cut(s) 877
Eco47I GGWCC 4 cut(s) 61, 515, 632, 731
Eco57I CTGAAG 1 cut(s) 887
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 2 cut(s) 532, 632
EcoRI GAATTC 1 cut(s) 809
EcoRII CCWGG 1 cut(s) 279
EcoRV GATATC 1 cut(s) 877
EcoT14I CCWWGG 1 cut(s) 1051
EcoT22I ATGCAT 1 cut(s) 344
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 1051
FaeI CATG 9 cut(s) 55, 167, 843, 909, 986, 1075, 1141, 1239, 1371
FaqI GGGAC 3 cut(s) 618, 923, 1033
FatI CATG 9 cut(s) 51, 163, 839, 905, 982, 1071, 1137, 1235, 1367
FauI CCCGC 1 cut(s) 1000
FblI GTMKAC 1 cut(s) 969
Fnu4HI GCNGC 7 cut(s) 56, 116, 129, 132, 289, 1080, 1096
FokI GGATG 3 cut(s) 44, 1043, 1359
Fsp4HI GCNGC 7 cut(s) 56, 116, 129, 132, 289, 1080, 1096
FspBI CTAG 5 cut(s) 138, 578, 1148, 1269, 1402
FspI TGCGCA 1 cut(s) 1094
GlaI GCGC 2 cut(s) 161, 1094
GluI GCNGC 7 cut(s) 56, 116, 129, 132, 289, 1080, 1096
GsaI CCCAGC 1 cut(s) 49
GsuI CTGGAG 1 cut(s) 1359
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 5 cut(s) 50, 324, 336, 534, 1310
HapII CCGG 2 cut(s) 518, 1295
HgaI GACGC 2 cut(s) 206, 925
HhaI GCGC 2 cut(s) 162, 1095
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 9 cut(s) 55, 167, 843, 909, 986, 1075, 1141, 1239, 1371
Hin6I GCGC 2 cut(s) 160, 1093
HinP1I GCGC 2 cut(s) 160, 1093
HincII GTYRAC 2 cut(s) 205, 833
HindII GTYRAC 2 cut(s) 205, 833
HinfI GANTC 5 cut(s) 66, 184, 461, 979, 1318
HpaI GTTAAC 1 cut(s) 205
HpaII CCGG 2 cut(s) 518, 1295
HphI GGTGA 2 cut(s) 223, 1262
Hpy166II GTNNAC 4 cut(s) 205, 731, 833, 970
Hpy188I TCNGA 1 cut(s) 978
Hpy188III TCNNGA 9 cut(s) 253, 262, 518, 578, 880, 1072, 1085, 1322, 1385
Hpy8I GTNNAC 4 cut(s) 205, 731, 833, 970
HpyAV CCTTC 3 cut(s) 523, 557, 1069
HpyCH4III ACNGT 1 cut(s) 1043
HpyCH4IV ACGT 3 cut(s) 297, 583, 665
HpyCH4V TGCA 8 cut(s) 58, 342, 373, 386, 416, 704, 1266, 1359
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 992
HpyF3I CTNAG 6 cut(s) 188, 593, 620, 680, 946, 1060
HpySE526I ACGT 3 cut(s) 297, 583, 665
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 9 cut(s) 55, 167, 843, 909, 986, 1075, 1141, 1239, 1371
HspAI GCGC 2 cut(s) 160, 1093
KasI GGCGCC 1 cut(s) 159
Kpn2I TCCGGA 1 cut(s) 517
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 7 cut(s) 310, 405, 676, 693, 921, 1324, 1364
LmnI GCTCC 2 cut(s) 448, 1087
Lsp1109I GCAGC 5 cut(s) 42, 140, 143, 1091, 1107
LweI GCATC 2 cut(s) 182, 1021
MaeI CTAG 5 cut(s) 138, 578, 1148, 1269, 1402
MaeII ACGT 3 cut(s) 297, 583, 665
MaeIII GTNAC 2 cut(s) 1055, 1215
MalI GATC 7 cut(s) 312, 407, 678, 695, 923, 1326, 1366
MboI GATC 7 cut(s) 310, 405, 676, 693, 921, 1324, 1364
MboII GAAGA 2 cut(s) 1265, 1286
MfeI CAATTG 1 cut(s) 301
MflI RGATCY 2 cut(s) 405, 693
MhlI GDGCHC 3 cut(s) 42, 765, 800
MluCI AATT 8 cut(s) 73, 301, 410, 809, 1019, 1115, 1285, 1328
Mly113I GGCGCC 1 cut(s) 160
MlyI GAGTC 2 cut(s) 178, 455
MmeI TCCRAC 4 cut(s) 426, 1092, 1152, 1400
Mph1103I ATGCAT 1 cut(s) 344
MroI TCCGGA 1 cut(s) 517
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 2 cut(s) 518, 1295
MspR9I CCNGG 1 cut(s) 281
MunI CAATTG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 1361
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 3 cut(s) 644, 936, 995
MwoI GCNNNNNNNGC 2 cut(s) 348, 992
NarI GGCGCC 1 cut(s) 160
NdeII GATC 7 cut(s) 310, 405, 676, 693, 921, 1324, 1364
NlaIII CATG 9 cut(s) 55, 167, 843, 909, 986, 1075, 1141, 1239, 1371
NlaIV GGNNCC 6 cut(s) 161, 391, 407, 516, 634, 1123
NmuCI GTSAC 2 cut(s) 1055, 1215
NsbI TGCGCA 1 cut(s) 1094
NsiI ATGCAT 1 cut(s) 344
NspI RCATGY 1 cut(s) 1239
PaeR7I CTCGAG 1 cut(s) 260
PagI TCATGA 1 cut(s) 1071
PctI GAATGC 1 cut(s) 1361
PfeI GAWTC 3 cut(s) 66, 979, 1318
PkrI GCNGC 7 cut(s) 57, 117, 130, 133, 290, 1081, 1097
PleI GAGTC 2 cut(s) 178, 455
PluTI GGCGCC 1 cut(s) 163
PpsI GAGTC 2 cut(s) 178, 455
PpuMI RGGWCCY 1 cut(s) 632
PshAI GACNNNNGTC 1 cut(s) 1041
PsiI TTATAA 1 cut(s) 1284
Psp1406I AACGTT 1 cut(s) 583
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 45
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 6 cut(s) 161, 391, 407, 516, 634, 1123
PspPI GGNCC 7 cut(s) 48, 61, 322, 515, 532, 632, 731
PspPPI RGGWCCY 1 cut(s) 632
PstI CTGCAG 1 cut(s) 60
PstNI CAGNNNCTG 1 cut(s) 1085
PsuI RGATCY 2 cut(s) 405, 693
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 2 cut(s) 226, 1245
RsaNI GTAC 2 cut(s) 225, 1244
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 7 cut(s) 56, 116, 129, 132, 289, 1080, 1096
Sau3AI GATC 7 cut(s) 310, 405, 676, 693, 921, 1324, 1364
Sau96I GGNCC 7 cut(s) 48, 61, 322, 515, 532, 632, 731
SchI GAGTC 2 cut(s) 178, 455
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 3 cut(s) 42, 765, 800
SfaNI GCATC 2 cut(s) 182, 1021
SfcI CTRYAG 1 cut(s) 56
SfoI GGCGCC 1 cut(s) 161
Sfr274I CTCGAG 1 cut(s) 260
SinI GGWCC 4 cut(s) 61, 515, 632, 731
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 5 cut(s) 26, 260, 440, 1181, 1383
SmoI CTYRAG 5 cut(s) 26, 260, 440, 1181, 1383
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 8 cut(s) 73, 301, 410, 809, 1019, 1115, 1285, 1328
SsiI CCGC 4 cut(s) 116, 289, 887, 993
SspDI GGCGCC 1 cut(s) 159
SspI AATATT 1 cut(s) 653
SspMI CTAG 5 cut(s) 138, 578, 1148, 1269, 1402
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 1051
TaaI ACNGT 1 cut(s) 1043
TaiI ACGT 3 cut(s) 300, 586, 668
TaqI TCGA 3 cut(s) 261, 309, 1321
TaqII GACCGA 2 cut(s) 78, 748
TasI AATT 8 cut(s) 73, 301, 410, 809, 1019, 1115, 1285, 1328
TauI GCSGC 2 cut(s) 118, 291
TfiI GAWTC 3 cut(s) 66, 979, 1318
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 1181
TseFI GTSAC 2 cut(s) 1055, 1215
TseI GCWGC 5 cut(s) 55, 128, 131, 1079, 1095
Tsp45I GTSAC 2 cut(s) 1055, 1215
TspDTI ATGAA 4 cut(s) 676, 802, 1060, 1088
TspRI CASTG 1 cut(s) 1181
VpaK11BI GGWCC 4 cut(s) 61, 515, 632, 731
XapI RAATTY 2 cut(s) 809, 1115
XbaI TCTAGA 1 cut(s) 577
XceI RCATGY 1 cut(s) 1239
XcmI CCANNNNNNNNNTGG 1 cut(s) 1135
XhoI CTCGAG 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 969
XspI CTAG 5 cut(s) 138, 578, 1148, 1269, 1402
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.